Wall clock time and date at job start Tue Mar 31 2020 22:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86801 * 120.00258 * 2 1 4 4 H 1.48497 * 109.47182 * 270.00711 * 3 2 1 5 5 H 1.48501 * 109.46915 * 30.00545 * 3 2 1 6 6 H 1.48494 * 109.46922 * 150.00389 * 3 2 1 7 7 C 1.37882 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99622 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00162 * 359.97438 * 7 2 1 10 10 O 1.42899 * 110.88778 * 62.42954 * 9 7 2 11 11 C 1.55162 * 111.03525 * 186.33563 * 9 7 2 12 12 C 1.54340 * 103.01870 * 153.39559 * 11 9 7 13 13 N 1.47016 * 107.26567 * 338.13735 * 12 11 9 14 14 C 1.34780 * 125.64687 * 178.85158 * 13 12 11 15 15 O 1.21583 * 119.99709 * 179.69293 * 14 13 12 16 16 N 1.34777 * 119.99854 * 359.69284 * 14 13 12 17 17 C 1.46505 * 119.99601 * 180.02562 * 16 14 13 18 18 C 1.53002 * 109.46503 * 179.97438 * 17 16 14 19 19 C 1.50707 * 109.46612 * 179.97438 * 18 17 16 20 20 C 1.38711 * 120.40615 * 269.98025 * 19 18 17 21 21 C 1.38568 * 118.43748 * 179.75572 * 20 19 18 22 22 C 1.38397 * 119.14747 * 0.53020 * 21 20 19 23 23 Cl 1.73599 * 119.63613 * 179.73521 * 22 21 20 24 24 N 1.31950 * 120.73033 * 359.45465 * 22 21 20 25 25 C 1.31905 * 121.70652 * 0.27873 * 24 22 21 26 26 C 1.47425 * 108.70645 * 358.58685 * 13 12 11 27 27 H 0.97000 * 119.99956 * 359.97438 * 1 2 3 28 28 H 0.96692 * 113.99829 * 297.57117 * 10 9 7 29 29 H 1.08997 * 110.72089 * 271.94917 * 11 9 7 30 30 H 1.08991 * 110.72312 * 35.22657 * 11 9 7 31 31 H 1.09005 * 109.98488 * 218.66124 * 12 11 9 32 32 H 1.08996 * 109.77944 * 97.49572 * 12 11 9 33 33 H 0.96998 * 120.00098 * 359.97438 * 16 14 13 34 34 H 1.09003 * 109.47178 * 60.00262 * 17 16 14 35 35 H 1.08998 * 109.46748 * 299.99717 * 17 16 14 36 36 H 1.09003 * 109.47050 * 60.00354 * 18 17 16 37 37 H 1.08998 * 109.47527 * 299.99410 * 18 17 16 38 38 H 1.08002 * 120.77671 * 0.04211 * 20 19 18 39 39 H 1.07990 * 120.42443 * 180.26472 * 21 20 19 40 40 H 1.08005 * 119.60793 * 179.97438 * 25 24 22 41 41 H 1.08996 * 110.36940 * 143.18792 * 26 13 12 42 42 H 1.08993 * 110.36691 * 265.41155 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5467 1.4400 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.4606 -2.6311 -1.1837 11 6 2.2191 -3.7012 0.1586 12 6 1.3290 -4.7805 0.8106 13 7 0.2064 -4.0871 1.4588 14 6 -0.8065 -4.6806 2.1210 15 8 -1.6823 -4.0042 2.6247 16 7 -0.8485 -6.0237 2.2246 17 6 -1.9498 -6.6688 2.9439 18 6 -1.7592 -8.1866 2.9129 19 6 -2.8918 -8.8501 3.6533 20 6 -2.7895 -9.1013 5.0136 21 6 -3.8573 -9.7087 5.6546 22 6 -4.9781 -10.0523 4.9191 23 17 -6.3205 -10.8201 5.7079 24 7 -5.0400 -9.7977 3.6258 25 6 -4.0443 -9.2161 2.9853 26 6 0.3753 -2.6347 1.2702 27 1 -0.4850 0.8400 0.0004 28 1 -0.2253 -1.9559 -1.2758 29 1 2.5836 -4.0342 -0.8131 30 1 3.0496 -3.4432 0.8155 31 1 1.9009 -5.3358 1.5541 32 1 0.9531 -5.4600 0.0457 33 1 -0.1499 -6.5632 1.8224 34 1 -2.8954 -6.4118 2.4665 35 1 -1.9593 -6.3244 3.9780 36 1 -0.8135 -8.4438 3.3900 37 1 -1.7499 -8.5306 1.8787 38 1 -1.9003 -8.8256 5.5612 39 1 -3.8137 -9.9153 6.7137 40 1 -4.1310 -9.0241 1.9260 41 1 -0.5923 -2.1570 1.1167 42 1 0.8817 -2.1969 2.1303 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000826698607.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:33:43 Heat of formation + Delta-G solvation = -75.280077 kcal Electronic energy + Delta-G solvation = -26134.873465 eV Core-core repulsion = 22139.575360 eV Total energy + Delta-G solvation = -3995.298105 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.43218 -41.11689 -39.13898 -37.75637 -36.61691 -36.00983 -34.22168 -34.21272 -33.02888 -31.73946 -29.80414 -29.23452 -26.94538 -25.07137 -24.83009 -23.90311 -22.55081 -21.44062 -20.95070 -19.24108 -18.78678 -18.40440 -17.88163 -17.37659 -16.90895 -16.90381 -16.28197 -16.02698 -15.71567 -15.59860 -15.30791 -14.90486 -14.76123 -14.55004 -14.49866 -14.19859 -13.75395 -13.50310 -13.31683 -13.23167 -12.91557 -12.83236 -12.54107 -12.48007 -12.44194 -12.30648 -12.23440 -12.19297 -12.05251 -11.33178 -11.16474 -10.94213 -10.65515 -10.64071 -10.30693 -10.17207 -9.87821 -9.28968 -8.22895 -6.40076 -0.17162 0.15526 0.78917 1.42771 1.45069 1.54554 1.71294 2.18803 2.39449 2.56188 3.03243 3.11449 3.47098 3.75000 3.82614 3.83714 3.91808 3.99684 4.06032 4.14119 4.23349 4.30157 4.39313 4.59245 4.63919 4.67794 4.80033 4.87693 4.89318 5.04131 5.10708 5.14289 5.23988 5.33671 5.41557 5.49166 5.49420 5.53279 5.78255 6.08088 6.23433 6.66037 6.67706 7.11303 7.29619 7.36857 7.61377 8.82023 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.030586 B = 0.001811 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.235444 B =15458.282757 C =15790.268419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.024 3.976 3 Si 0.963 3.037 4 H -0.275 1.275 5 H -0.288 1.288 6 H -0.264 1.264 7 C -0.555 4.555 8 H 0.070 0.930 9 C 0.230 3.770 10 O -0.587 6.587 11 C -0.111 4.111 12 C 0.107 3.893 13 N -0.634 5.634 14 C 0.708 3.292 15 O -0.648 6.648 16 N -0.727 5.727 17 C 0.144 3.856 18 C -0.071 4.071 19 C -0.125 4.125 20 C -0.053 4.053 21 C -0.151 4.151 22 C 0.149 3.851 23 Cl -0.040 7.040 24 N -0.509 5.509 25 C 0.113 3.887 26 C 0.129 3.871 27 H 0.268 0.732 28 H 0.372 0.628 29 H 0.085 0.915 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.076 0.924 33 H 0.412 0.588 34 H 0.047 0.953 35 H 0.056 0.944 36 H 0.112 0.888 37 H 0.105 0.895 38 H 0.176 0.824 39 H 0.168 0.832 40 H 0.179 0.821 41 H 0.041 0.959 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.184 -22.776 9.332 24.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.176 4.176 3 Si 0.789 3.211 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.188 1.188 7 C -0.593 4.593 8 H 0.088 0.912 9 C 0.190 3.810 10 O -0.394 6.394 11 C -0.149 4.149 12 C -0.015 4.015 13 N -0.371 5.371 14 C 0.410 3.590 15 O -0.531 6.531 16 N -0.385 5.385 17 C 0.020 3.980 18 C -0.109 4.109 19 C -0.128 4.128 20 C -0.079 4.079 21 C -0.171 4.171 22 C -0.015 4.015 23 Cl -0.012 7.012 24 N -0.220 5.220 25 C -0.043 4.043 26 C 0.005 3.995 27 H 0.077 0.923 28 H 0.220 0.780 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.112 0.888 32 H 0.094 0.906 33 H 0.250 0.750 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.130 0.870 37 H 0.123 0.877 38 H 0.193 0.807 39 H 0.186 0.814 40 H 0.196 0.804 41 H 0.059 0.941 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -2.513 -23.070 9.265 24.988 hybrid contribution 0.186 1.814 0.394 1.865 sum -2.326 -21.257 9.659 23.464 Atomic orbital electron populations 1.69851 1.07196 1.28305 1.50141 1.25845 0.95729 1.02881 0.93194 0.85474 0.78750 0.78700 0.78221 1.20094 1.21358 1.18803 1.21818 0.93985 0.91259 1.52265 0.91213 1.19889 0.87248 0.93250 0.80619 1.86087 1.51402 1.56751 1.45204 1.22599 0.97205 0.93767 1.01334 1.22142 0.87058 0.95354 0.96915 1.47877 1.24613 1.08569 1.56030 1.15773 0.81120 0.82938 0.79160 1.90859 1.41550 1.64966 1.55731 1.44845 1.29786 1.03287 1.60545 1.21165 0.88588 0.92151 0.96082 1.20652 0.97040 0.90587 1.02643 1.20890 0.96986 0.99610 0.95275 1.21962 0.99035 0.93275 0.93604 1.22138 0.92099 1.00077 1.02821 1.21952 0.90404 0.98413 0.90697 1.98402 1.46193 1.79203 1.77354 1.66981 1.31526 1.14145 1.09390 1.22983 0.87483 0.92749 1.01135 1.22621 0.99917 0.77938 0.99022 0.92274 0.77968 0.89603 0.89329 0.88771 0.90586 0.75041 0.93449 0.92595 0.86983 0.87676 0.80663 0.81444 0.80415 0.94081 0.94383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.17 10.69 21.45 0.23 -49.94 16 2 C 0.02 1.27 5.29 84.66 0.45 1.72 16 3 Si 0.96 41.54 29.54 68.60 2.03 43.57 16 4 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 5 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 6 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 7 C -0.56 -28.43 8.27 25.60 0.21 -28.22 16 8 H 0.07 3.44 7.79 -2.91 -0.02 3.41 16 9 C 0.23 10.88 0.87 -10.15 -0.01 10.87 16 10 O -0.59 -29.64 13.16 -148.98 -1.96 -31.60 16 11 C -0.11 -3.95 6.13 31.79 0.19 -3.76 16 12 C 0.11 3.15 6.15 86.74 0.53 3.68 16 13 N -0.63 -24.85 3.33 -829.74 -2.76 -27.61 16 14 C 0.71 27.29 8.49 179.05 1.52 28.81 16 15 O -0.65 -31.75 16.60 -3.98 -0.07 -31.82 16 16 N -0.73 -17.88 5.52 -478.52 -2.64 -20.52 16 17 C 0.14 2.91 5.66 86.38 0.49 3.40 16 18 C -0.07 -0.70 5.48 29.85 0.16 -0.54 16 19 C -0.12 -1.57 5.15 -19.77 -0.10 -1.67 16 20 C -0.05 -0.57 9.86 22.46 0.22 -0.35 16 21 C -0.15 -1.96 9.88 22.39 0.22 -1.74 16 22 C 0.15 2.76 7.27 84.71 0.62 3.38 16 23 Cl -0.04 -0.70 29.11 -2.72 -0.08 -0.78 16 24 N -0.51 -10.72 10.34 -186.69 -1.93 -12.65 16 25 C 0.11 1.84 10.86 84.66 0.92 2.76 16 26 C 0.13 6.27 5.38 86.86 0.47 6.74 16 27 H 0.27 14.16 8.31 -92.71 -0.77 13.38 16 28 H 0.37 19.94 7.56 -74.06 -0.56 19.38 16 29 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.09 2.92 8.03 -2.39 -0.02 2.90 16 31 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 32 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 33 H 0.41 7.07 7.46 -92.71 -0.69 6.38 16 34 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.11 0.61 8.09 -2.39 -0.02 0.59 16 37 H 0.10 0.75 8.09 -2.39 -0.02 0.73 16 38 H 0.18 0.85 8.06 -2.91 -0.02 0.83 16 39 H 0.17 1.33 8.06 -2.92 -0.02 1.31 16 40 H 0.18 2.23 8.06 -2.91 -0.02 2.20 16 41 H 0.04 2.34 7.33 -2.39 -0.02 2.32 16 42 H 0.04 1.94 8.03 -2.39 -0.02 1.92 16 Total: -1.00 -73.23 369.93 -1.47 -74.70 By element: Atomic # 1 Polarization: 31.76 SS G_CDS: -0.19 Total: 31.57 kcal Atomic # 6 Polarization: 19.19 SS G_CDS: 5.89 Total: 25.08 kcal Atomic # 7 Polarization: -103.62 SS G_CDS: -7.10 Total: -110.72 kcal Atomic # 8 Polarization: -61.39 SS G_CDS: -2.03 Total: -63.42 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -0.08 Total: -0.78 kcal Total: -73.23 -1.47 -74.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000826698607.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.582 kcal (2) G-P(sol) polarization free energy of solvation -73.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds