Wall clock time and date at job start Tue Mar 31 2020 22:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38605 * 120.78295 * 2 1 4 4 C 1.38349 * 119.15069 * 180.02562 * 3 2 1 5 5 Cl 1.73600 * 119.63400 * 179.97438 * 4 3 2 6 6 N 1.31981 * 120.73474 * 359.72065 * 4 3 2 7 7 C 1.31879 * 121.70382 * 0.56703 * 6 4 3 8 8 C 1.50695 * 119.61268 * 179.70815 * 7 6 4 9 9 N 1.46497 * 109.47419 * 274.73234 * 8 7 6 10 10 C 1.34776 * 120.00365 * 179.97438 * 9 8 7 11 11 O 1.21587 * 119.99916 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00125 * 179.71924 * 10 9 8 13 13 C 1.47432 * 125.64754 * 359.96732 * 12 10 9 14 14 C 1.55138 * 104.71922 * 155.81631 * 13 12 10 15 15 C 1.55153 * 101.48593 * 37.29696 * 14 13 12 16 16 O 1.42903 * 110.72008 * 82.69665 * 15 14 13 17 17 C 1.50700 * 110.87145 * 205.89550 * 15 14 13 18 18 H 1.08005 * 119.99933 * 118.66926 * 17 15 14 19 19 C 1.37877 * 120.00183 * 298.67646 * 17 15 14 20 20 N 1.31510 * 120.00157 * 183.38902 * 19 17 15 21 21 Si 1.86796 * 119.99842 * 3.38246 * 19 17 15 22 22 H 1.48505 * 109.47183 * 84.83938 * 21 19 17 23 23 H 1.48496 * 109.47107 * 204.83712 * 21 19 17 24 24 H 1.48501 * 109.47322 * 324.83896 * 21 19 17 25 25 C 1.47023 * 125.65054 * 180.27788 * 12 10 9 26 26 C 1.38191 * 120.78031 * 359.43443 * 7 6 4 27 27 H 1.08994 * 109.47676 * 269.98359 * 1 2 3 28 28 H 1.09002 * 109.46589 * 29.98431 * 1 2 3 29 29 H 1.09000 * 109.47327 * 149.97603 * 1 2 3 30 30 H 1.08000 * 120.42513 * 0.03826 * 3 2 1 31 31 H 1.09002 * 109.47524 * 154.72691 * 8 7 6 32 32 H 1.09006 * 109.47199 * 34.72714 * 8 7 6 33 33 H 0.97005 * 120.00152 * 359.97438 * 9 8 7 34 34 H 1.08992 * 110.36956 * 274.74284 * 13 12 10 35 35 H 1.09001 * 110.36358 * 37.07584 * 13 12 10 36 36 H 1.09004 * 111.18918 * 279.19277 * 14 13 12 37 37 H 1.09002 * 110.90060 * 155.27952 * 14 13 12 38 38 H 0.96692 * 113.99762 * 185.02513 * 16 15 14 39 39 H 0.97003 * 120.00526 * 179.97438 * 20 19 17 40 40 H 1.09002 * 109.88046 * 300.43992 * 25 12 10 41 41 H 1.08996 * 109.88520 * 61.44730 * 25 12 10 42 42 H 1.08002 * 120.40625 * 180.29360 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2164 1.1908 0.0000 4 6 3.5993 1.1514 -0.0005 5 17 4.5003 2.6352 -0.0012 6 7 4.2412 -0.0018 0.0045 7 6 3.5980 -1.1531 -0.0009 8 6 4.3786 -2.4421 -0.0015 9 7 4.7341 -2.7973 -1.3776 10 6 5.4391 -3.9193 -1.6234 11 8 5.7798 -4.6371 -0.7030 12 7 5.7613 -4.2489 -2.8899 13 6 5.4077 -3.4768 -4.0951 14 6 6.4747 -3.8781 -5.1473 15 6 6.6658 -5.3856 -4.8341 16 8 5.6509 -6.1665 -5.4684 17 6 8.0356 -5.8520 -5.2551 18 1 8.7234 -6.2414 -4.5190 19 6 8.4109 -5.7815 -6.5799 20 7 9.5803 -6.2497 -6.9579 21 14 7.2584 -5.0211 -7.8379 22 1 7.4429 -3.5476 -7.8513 23 1 7.5627 -5.5702 -9.1836 24 1 5.8533 -5.3408 -7.4790 25 6 6.5180 -5.4412 -3.2990 26 6 2.2167 -1.1914 -0.0004 27 1 -0.3634 -0.0003 1.0276 28 1 -0.3632 0.8902 -0.5136 29 1 -0.3634 -0.8898 -0.5142 30 1 1.6962 2.1373 0.0006 31 1 3.7703 -3.2355 0.4329 32 1 5.2871 -2.3170 0.5876 33 1 4.4620 -2.2248 -2.1120 34 1 4.4102 -3.7482 -4.4404 35 1 5.4613 -2.4076 -3.8899 36 1 7.4031 -3.3270 -4.9970 37 1 6.0962 -3.7342 -6.1594 38 1 5.6791 -7.1062 -5.2426 39 1 9.8443 -6.2005 -7.8900 40 1 7.5025 -5.4339 -2.8312 41 1 5.9765 -6.3415 -3.0087 42 1 1.6961 -2.1377 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000827042927.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:45:55 Heat of formation + Delta-G solvation = -35.736943 kcal Electronic energy + Delta-G solvation = -26637.766011 eV Core-core repulsion = 22644.182626 eV Total energy + Delta-G solvation = -3993.583386 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.97869 -39.84912 -37.80594 -37.06971 -35.25733 -34.53636 -34.18486 -32.42876 -31.75460 -30.16068 -28.55038 -28.37781 -26.93662 -24.86657 -23.58791 -22.61443 -21.63942 -20.08860 -19.59832 -18.13915 -17.49171 -17.39429 -16.86691 -16.23676 -15.98289 -15.48477 -15.11468 -14.85887 -14.82405 -14.28691 -13.98927 -13.76626 -13.59911 -13.31283 -13.25583 -13.14167 -12.92114 -12.80109 -12.41071 -12.15936 -12.11166 -11.95548 -11.66471 -11.62457 -11.34879 -11.13508 -10.58787 -10.30365 -10.16948 -10.09247 -10.04635 -9.81452 -9.39095 -9.08735 -9.03392 -8.74738 -8.51362 -8.06565 -6.21595 -4.33525 0.36709 0.60212 1.39308 2.73319 3.24847 3.28253 3.40465 3.48502 3.58325 3.74608 4.00361 4.24962 4.37202 4.40791 4.45226 4.57455 4.80976 4.98621 5.03877 5.07385 5.12593 5.13897 5.28214 5.36413 5.49924 5.57066 5.60707 5.67190 5.72841 5.83023 5.97600 6.09286 6.45438 6.47158 6.53967 6.61658 6.67085 7.10139 7.26562 7.29439 7.49514 8.18438 8.24925 8.73748 8.84901 8.89183 9.41156 10.88857 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016059 B = 0.002507 C = 0.002422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.121908 B =11165.679539 C =11559.116984 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.029 4.029 3 C -0.154 4.154 4 C 0.180 3.820 5 Cl -0.028 7.028 6 N -0.466 5.466 7 C 0.136 3.864 8 C 0.193 3.807 9 N -0.744 5.744 10 C 0.722 3.278 11 O -0.594 6.594 12 N -0.626 5.626 13 C 0.102 3.898 14 C -0.124 4.124 15 C 0.216 3.784 16 O -0.573 6.573 17 C -0.550 4.550 18 H 0.079 0.921 19 C 0.088 3.912 20 N -0.886 5.886 21 Si 0.876 3.124 22 H -0.283 1.283 23 H -0.300 1.300 24 H -0.228 1.228 25 C 0.115 3.885 26 C -0.152 4.152 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.146 0.854 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.396 0.604 34 H 0.065 0.935 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.366 0.634 39 H 0.267 0.733 40 H 0.073 0.927 41 H 0.057 0.943 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.954 15.735 12.911 28.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.037 4.037 3 C -0.175 4.175 4 C 0.015 3.985 5 Cl 0.000 7.000 6 N -0.178 5.178 7 C -0.002 4.002 8 C 0.068 3.932 9 N -0.401 5.401 10 C 0.424 3.576 11 O -0.473 6.473 12 N -0.363 5.363 13 C -0.021 4.021 14 C -0.162 4.162 15 C 0.176 3.824 16 O -0.380 6.380 17 C -0.588 4.588 18 H 0.097 0.903 19 C -0.117 4.117 20 N -0.523 5.523 21 Si 0.704 3.296 22 H -0.210 1.210 23 H -0.228 1.228 24 H -0.151 1.151 25 C -0.008 4.008 26 C -0.172 4.172 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.097 0.903 30 H 0.164 0.836 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.230 0.770 34 H 0.083 0.917 35 H 0.078 0.922 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.213 0.787 39 H 0.077 0.923 40 H 0.091 0.909 41 H 0.075 0.925 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -18.755 15.878 13.305 27.944 hybrid contribution -1.023 0.495 -0.872 1.432 sum -19.778 16.372 12.434 28.527 Atomic orbital electron populations 1.20867 0.89106 1.03999 1.03422 1.20353 0.97321 0.91990 0.94082 1.21774 0.92486 0.99986 1.03217 1.21626 0.88890 0.88692 0.99243 1.98425 1.76400 1.28776 1.96389 1.66840 1.41507 0.97109 1.12305 1.21147 0.91092 0.92438 0.95537 1.19886 0.99256 0.89874 0.84155 1.44949 1.60866 1.26178 1.08149 1.15337 0.78878 0.81050 0.82301 1.90902 1.60471 1.53118 1.42837 1.47663 1.57895 1.27175 1.03563 1.22353 0.99289 0.94585 0.85867 1.23110 0.98141 0.97470 0.97506 1.19987 0.88121 0.88331 0.85979 1.86490 1.56266 1.22682 1.72568 1.21188 0.97505 1.45102 0.94970 0.90259 1.24952 0.94702 0.93525 0.98498 1.69925 1.20625 1.44154 1.17554 0.87069 0.84467 0.78686 0.79410 1.20999 1.22773 1.15107 1.22682 0.95179 0.85384 0.97515 1.22063 0.94415 0.99515 1.01227 0.89946 0.90557 0.90348 0.83591 0.89530 0.89495 0.77030 0.91685 0.92183 0.89273 0.90722 0.78717 0.92329 0.90872 0.92467 0.83533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.42 10.06 36.01 0.36 -0.06 16 2 C -0.03 -0.19 5.92 -104.32 -0.62 -0.81 16 3 C -0.15 -1.13 9.58 -39.41 -0.38 -1.50 16 4 C 0.18 1.80 7.27 -17.45 -0.13 1.67 16 5 Cl -0.03 -0.27 29.11 -51.86 -1.51 -1.78 16 6 N -0.47 -5.45 10.25 -6.62 -0.07 -5.52 16 7 C 0.14 1.38 6.15 -82.59 -0.51 0.88 16 8 C 0.19 2.26 5.98 -5.20 -0.03 2.23 16 9 N -0.74 -10.24 5.51 -66.42 -0.37 -10.61 16 10 C 0.72 13.07 8.49 -86.92 -0.74 12.33 16 11 O -0.59 -12.71 16.67 5.29 0.09 -12.63 16 12 N -0.63 -11.59 3.32 -176.09 -0.59 -12.17 16 13 C 0.10 1.69 6.58 -2.40 -0.02 1.67 16 14 C -0.12 -2.50 4.83 -24.46 -0.12 -2.62 16 15 C 0.22 4.77 0.67 -89.94 -0.06 4.71 16 16 O -0.57 -12.19 10.44 -35.23 -0.37 -12.56 16 17 C -0.55 -14.59 8.82 -34.44 -0.30 -14.90 16 18 H 0.08 2.30 7.82 -52.48 -0.41 1.89 16 19 C 0.09 2.44 5.47 -17.82 -0.10 2.34 16 20 N -0.89 -26.18 13.96 55.43 0.77 -25.41 16 21 Si 0.88 20.90 23.89 -169.99 -4.06 16.84 16 22 H -0.28 -6.57 7.08 56.52 0.40 -6.17 16 23 H -0.30 -7.33 7.11 56.52 0.40 -6.93 16 24 H -0.23 -5.27 5.50 56.52 0.31 -4.96 16 25 C 0.12 2.38 6.21 -3.06 -0.02 2.36 16 26 C -0.15 -1.16 9.43 -39.44 -0.37 -1.53 16 27 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.08 0.21 8.10 -51.93 -0.42 -0.22 16 29 H 0.08 0.24 8.10 -51.93 -0.42 -0.18 16 30 H 0.15 0.72 8.06 -52.49 -0.42 0.30 16 31 H 0.09 0.91 8.04 -51.93 -0.42 0.49 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.40 4.87 6.94 -40.82 -0.28 4.58 16 34 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 35 H 0.06 0.84 7.29 -51.93 -0.38 0.46 16 36 H 0.09 1.84 8.05 -51.93 -0.42 1.42 16 37 H 0.07 1.51 5.00 -51.93 -0.26 1.25 16 38 H 0.37 6.78 9.08 45.56 0.41 7.20 16 39 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.07 1.64 7.66 -51.93 -0.40 1.24 16 41 H 0.06 1.15 8.06 -51.93 -0.42 0.73 16 42 H 0.15 0.84 8.06 -52.49 -0.42 0.41 16 LS Contribution 361.29 15.07 5.44 5.44 Total: -1.00 -33.44 361.29 -8.43 -41.87 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -4.75 Total: 9.74 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: -3.02 Total: 6.78 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.25 Total: -53.70 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: -0.28 Total: -25.18 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.06 Total: 16.84 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.51 Total: -1.78 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -33.44 -8.43 -41.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000827042927.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.129 kcal (2) G-P(sol) polarization free energy of solvation -33.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds