Wall clock time and date at job start Tue Mar 31 2020 22:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00039 * 2 1 4 4 H 1.48504 * 109.47073 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46974 * 299.99593 * 3 2 1 6 6 H 1.48501 * 109.47222 * 59.99976 * 3 2 1 7 7 C 1.37876 * 119.99720 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99947 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00471 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47357 * 179.97438 * 9 7 2 11 11 C 1.34783 * 120.00116 * 269.99506 * 10 9 7 12 12 O 1.21286 * 119.99659 * 4.44189 * 11 10 9 13 13 C 1.50698 * 119.99818 * 184.43495 * 11 10 9 14 14 O 1.45203 * 109.46794 * 174.73626 * 13 11 10 15 15 C 1.34223 * 117.00282 * 180.02562 * 14 13 11 16 16 O 1.20829 * 119.99816 * 359.97438 * 15 14 13 17 17 C 1.50693 * 120.00538 * 179.97438 * 15 14 13 18 18 H 1.09002 * 115.54795 * 325.58289 * 17 15 14 19 19 C 1.53004 * 117.50013 * 111.24774 * 17 15 14 20 20 C 1.53002 * 117.50114 * 179.91063 * 17 15 14 21 21 F 1.39897 * 117.50100 * 359.97438 * 20 17 15 22 22 F 1.39901 * 117.49814 * 144.99645 * 20 17 15 23 23 C 1.39925 * 120.00056 * 90.00211 * 10 9 7 24 24 C 1.38875 * 120.07218 * 66.71485 * 23 10 9 25 25 C 1.38115 * 119.92705 * 179.97438 * 24 23 10 26 26 C 1.38281 * 120.06877 * 0.25894 * 25 24 23 27 27 C 1.38278 * 120.14427 * 359.48971 * 26 25 24 28 28 C 1.38117 * 120.07108 * 0.50789 * 27 26 25 29 29 H 0.96999 * 119.99413 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46822 * 59.99925 * 9 7 2 31 31 H 1.09001 * 109.47063 * 300.00275 * 9 7 2 32 32 H 1.09002 * 109.47369 * 294.73421 * 13 11 10 33 33 H 1.08995 * 109.47067 * 54.73945 * 13 11 10 34 34 H 1.08999 * 117.50009 * 214.98281 * 19 17 15 35 35 H 1.09000 * 117.49879 * 0.02562 * 19 17 15 36 36 H 1.07995 * 120.03399 * 0.02562 * 24 23 10 37 37 H 1.08001 * 119.95984 * 179.97438 * 25 24 23 38 38 H 1.08005 * 119.92194 * 179.74343 * 26 25 24 39 39 H 1.07999 * 119.96587 * 180.23217 * 27 26 25 40 40 H 1.07996 * 120.03469 * 179.77343 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6409 -4.1250 -1.1667 12 8 2.3103 -3.6133 -2.2155 13 6 3.5412 -5.3334 -1.1686 14 8 3.7709 -5.7637 -2.5362 15 6 4.5578 -6.8365 -2.7136 16 8 5.0393 -7.3972 -1.7577 17 6 4.8409 -7.3416 -4.1048 18 1 4.0228 -7.2390 -4.8178 19 6 6.2664 -7.1829 -4.6377 20 6 5.7469 -8.5671 -4.2408 21 9 6.2496 -9.1325 -3.0641 22 9 5.4619 -9.4701 -5.2706 23 6 2.6576 -4.1445 1.2123 24 6 1.7773 -4.8136 2.0525 25 6 2.2293 -5.3378 3.2476 26 6 3.5557 -5.1923 3.6104 27 6 4.4360 -4.5311 2.7737 28 6 3.9903 -4.0046 1.5771 29 1 -0.4849 0.8401 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 4.4933 -5.0780 -0.7033 33 1 3.0680 -6.1400 -0.6086 34 1 6.3861 -6.9762 -5.7012 35 1 6.9995 -6.7134 -3.9817 36 1 0.7405 -4.9246 1.7712 37 1 1.5450 -5.8579 3.9016 38 1 3.9058 -5.5996 4.5475 39 1 5.4721 -4.4224 3.0582 40 1 4.6774 -3.4851 0.9258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837985936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:47 Heat of formation + Delta-G solvation = -141.975316 kcal Electronic energy + Delta-G solvation = -28856.551207 eV Core-core repulsion = 24274.271548 eV Total energy + Delta-G solvation = -4582.279659 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.05384 -47.69963 -40.85388 -39.88986 -38.24216 -36.98467 -35.90803 -34.94963 -32.78938 -30.82183 -29.66708 -29.25767 -26.95058 -25.28494 -23.13501 -22.94485 -22.55730 -22.12327 -20.90565 -19.29436 -18.83290 -17.72750 -17.38323 -17.02287 -16.77061 -16.51347 -16.32668 -15.99098 -15.80107 -15.24363 -15.06466 -14.44978 -14.34344 -14.32144 -14.20063 -13.95362 -13.76616 -13.45305 -13.22472 -13.04470 -12.91837 -12.53658 -12.36548 -12.24620 -11.73002 -11.55434 -11.29192 -11.15155 -10.90063 -10.85445 -10.80183 -10.72457 -10.55811 -10.23997 -9.81214 -9.48851 -8.76583 -8.70197 -8.50920 -7.81100 -6.12677 -4.17275 1.46362 1.56797 1.61587 1.96885 2.53165 2.77622 3.01507 3.26194 3.33580 3.37247 3.53607 3.67497 3.93496 4.03500 4.13444 4.38599 4.52737 4.66904 4.91058 5.05450 5.09409 5.11419 5.14606 5.19751 5.21719 5.22975 5.28739 5.60034 5.74092 5.91877 6.13507 6.18190 6.52315 6.66145 6.68397 6.84725 7.10421 7.21915 7.32387 7.44670 7.82329 8.09063 8.13211 8.65019 8.86454 9.47428 10.95864 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011582 B = 0.003144 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.929063 B = 8904.312145 C =10468.402740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.063 3.937 3 Si 0.900 3.100 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.283 1.283 7 C -0.527 4.527 8 H 0.059 0.941 9 C 0.250 3.750 10 N -0.554 5.554 11 C 0.515 3.485 12 O -0.502 6.502 13 C 0.051 3.949 14 O -0.320 6.320 15 C 0.489 3.511 16 O -0.488 6.488 17 C -0.169 4.169 18 H 0.164 0.836 19 C -0.141 4.141 20 C 0.232 3.768 21 F -0.138 7.138 22 F -0.151 7.151 23 C 0.152 3.848 24 C -0.122 4.122 25 C -0.108 4.108 26 C -0.131 4.131 27 C -0.107 4.107 28 C -0.127 4.127 29 H 0.264 0.736 30 H 0.049 0.951 31 H 0.040 0.960 32 H 0.101 0.899 33 H 0.098 0.902 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.126 0.874 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.654 -16.034 -2.138 19.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.209 1.209 7 C -0.566 4.566 8 H 0.078 0.922 9 C 0.133 3.867 10 N -0.284 5.284 11 C 0.300 3.700 12 O -0.375 6.375 13 C -0.026 4.026 14 O -0.235 6.235 15 C 0.330 3.670 16 O -0.375 6.375 17 C -0.189 4.189 18 H 0.182 0.818 19 C -0.178 4.178 20 C 0.195 3.805 21 F -0.118 7.118 22 F -0.132 7.132 23 C 0.060 3.940 24 C -0.142 4.142 25 C -0.127 4.127 26 C -0.149 4.149 27 C -0.126 4.126 28 C -0.147 4.147 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.119 0.881 33 H 0.116 0.884 34 H 0.159 0.841 35 H 0.150 0.850 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 10.408 -15.788 -2.439 19.066 hybrid contribution 0.331 0.859 0.316 0.974 sum 10.739 -14.928 -2.123 18.512 Atomic orbital electron populations 1.69933 1.05987 1.27107 1.50192 1.24911 0.94910 0.99262 0.94868 0.86405 0.79995 0.83171 0.77654 1.19753 1.20775 1.20884 1.21377 0.93453 0.90314 1.51419 0.92239 1.19513 0.86847 0.81373 0.98981 1.45888 1.45846 1.34776 1.01879 1.19692 0.81584 0.84228 0.84496 1.90744 1.55932 1.60504 1.30356 1.22994 1.01648 0.97547 0.80433 1.86509 1.62157 1.43515 1.31326 1.22054 0.76317 0.78567 0.90072 1.90770 1.48283 1.56369 1.42054 1.23108 0.99519 0.99991 0.96260 0.81807 1.24405 0.94095 0.93562 1.05783 1.19567 1.01601 0.81653 0.77681 1.93142 1.87146 1.86505 1.44998 1.93075 1.93715 1.69625 1.56735 1.17794 0.92630 0.95218 0.88315 1.21313 1.00084 0.97750 0.95053 1.20994 0.95824 0.99770 0.96089 1.21097 0.93720 1.00428 0.99668 1.20983 0.99649 0.97991 0.93950 1.21373 0.95582 1.00150 0.97567 0.92629 0.93307 0.94244 0.88096 0.88354 0.84059 0.84953 0.85569 0.85912 0.86214 0.85958 0.85879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.01 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.61 29.54 -169.99 -5.02 16.59 16 4 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 7 C -0.53 -14.66 9.39 -34.44 -0.32 -14.99 16 8 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 9 C 0.25 6.36 5.07 -5.20 -0.03 6.34 16 10 N -0.55 -11.63 2.51 -114.74 -0.29 -11.92 16 11 C 0.51 10.60 7.62 -10.98 -0.08 10.52 16 12 O -0.50 -12.34 16.13 -14.05 -0.23 -12.56 16 13 C 0.05 0.82 4.61 36.00 0.17 0.99 16 14 O -0.32 -5.02 9.76 -45.87 -0.45 -5.47 16 15 C 0.49 6.50 7.74 36.00 0.28 6.78 16 16 O -0.49 -7.46 14.90 -18.75 -0.28 -7.74 16 17 C -0.17 -1.57 6.28 -91.77 -0.58 -2.15 16 18 H 0.16 1.17 8.14 -51.93 -0.42 0.75 16 19 C -0.14 -0.93 10.21 -26.69 -0.27 -1.21 16 20 C 0.23 2.20 5.19 -26.69 -0.14 2.06 16 21 F -0.14 -1.69 15.72 2.25 0.04 -1.65 16 22 F -0.15 -1.43 17.60 2.25 0.04 -1.39 16 23 C 0.15 2.69 4.43 -83.69 -0.37 2.31 16 24 C -0.12 -1.90 9.64 -39.39 -0.38 -2.28 16 25 C -0.11 -1.39 10.04 -39.61 -0.40 -1.78 16 26 C -0.13 -1.58 10.04 -39.55 -0.40 -1.98 16 27 C -0.11 -1.39 10.04 -39.61 -0.40 -1.79 16 28 C -0.13 -2.00 8.44 -39.39 -0.33 -2.33 16 29 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 30 H 0.05 1.38 7.49 -51.93 -0.39 0.99 16 31 H 0.04 1.02 7.83 -51.93 -0.41 0.61 16 32 H 0.10 1.49 6.96 -51.93 -0.36 1.13 16 33 H 0.10 1.45 8.02 -51.93 -0.42 1.03 16 34 H 0.14 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.13 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.13 1.90 8.06 -52.49 -0.42 1.47 16 37 H 0.12 1.25 8.06 -52.49 -0.42 0.82 16 38 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 39 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 40 H 0.12 1.92 7.90 -52.49 -0.41 1.50 16 LS Contribution 365.94 15.07 5.51 5.51 Total: -1.00 -34.10 365.94 -7.78 -41.88 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -4.49 Total: -0.13 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -3.35 Total: 2.16 kcal Atomic # 7 Polarization: -37.64 SS G_CDS: 0.45 Total: -37.19 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.95 Total: -25.77 kcal Atomic # 9 Polarization: -3.12 SS G_CDS: 0.08 Total: -3.05 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.10 -7.78 -41.88 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837985936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.098 kcal (2) G-P(sol) polarization free energy of solvation -34.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds