Wall clock time and date at job start Tue Mar 31 2020 22:25:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00039 * 2 1 4 4 H 1.48504 * 109.47073 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46974 * 299.99593 * 3 2 1 6 6 H 1.48501 * 109.47222 * 59.99976 * 3 2 1 7 7 C 1.37876 * 119.99720 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99947 * 179.97438 * 7 2 1 9 9 C 1.50700 * 120.00471 * 0.02562 * 7 2 1 10 10 N 1.46495 * 109.47357 * 179.97438 * 9 7 2 11 11 C 1.34783 * 120.00116 * 269.99506 * 10 9 7 12 12 O 1.21286 * 119.99659 * 4.44189 * 11 10 9 13 13 C 1.50698 * 119.99818 * 184.43495 * 11 10 9 14 14 O 1.45203 * 109.46794 * 174.73626 * 13 11 10 15 15 C 1.34223 * 117.00282 * 180.02562 * 14 13 11 16 16 O 1.20829 * 119.99816 * 359.97438 * 15 14 13 17 17 C 1.50693 * 120.00538 * 179.97438 * 15 14 13 18 18 H 1.09002 * 115.54795 * 325.58289 * 17 15 14 19 19 C 1.53004 * 117.50013 * 111.24774 * 17 15 14 20 20 C 1.53002 * 117.50114 * 179.91063 * 17 15 14 21 21 F 1.39897 * 117.50100 * 359.97438 * 20 17 15 22 22 F 1.39901 * 117.49814 * 144.99645 * 20 17 15 23 23 C 1.39925 * 120.00056 * 90.00211 * 10 9 7 24 24 C 1.38875 * 120.07218 * 66.71485 * 23 10 9 25 25 C 1.38115 * 119.92705 * 179.97438 * 24 23 10 26 26 C 1.38281 * 120.06877 * 0.25894 * 25 24 23 27 27 C 1.38278 * 120.14427 * 359.48971 * 26 25 24 28 28 C 1.38117 * 120.07108 * 0.50789 * 27 26 25 29 29 H 0.96999 * 119.99413 * 0.02562 * 1 2 3 30 30 H 1.09005 * 109.46822 * 59.99925 * 9 7 2 31 31 H 1.09001 * 109.47063 * 300.00275 * 9 7 2 32 32 H 1.09002 * 109.47369 * 294.73421 * 13 11 10 33 33 H 1.08995 * 109.47067 * 54.73945 * 13 11 10 34 34 H 1.08999 * 117.50009 * 214.98281 * 19 17 15 35 35 H 1.09000 * 117.49879 * 0.02562 * 19 17 15 36 36 H 1.07995 * 120.03399 * 0.02562 * 24 23 10 37 37 H 1.08001 * 119.95984 * 179.97438 * 25 24 23 38 38 H 1.08005 * 119.92194 * 179.74343 * 26 25 24 39 39 H 1.07999 * 119.96587 * 180.23217 * 27 26 25 40 40 H 1.07996 * 120.03469 * 179.77343 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8905 2.3965 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 7 2.2030 -3.6127 0.0005 11 6 2.6409 -4.1250 -1.1667 12 8 2.3103 -3.6133 -2.2155 13 6 3.5412 -5.3334 -1.1686 14 8 3.7709 -5.7637 -2.5362 15 6 4.5578 -6.8365 -2.7136 16 8 5.0393 -7.3972 -1.7577 17 6 4.8409 -7.3416 -4.1048 18 1 4.0228 -7.2390 -4.8178 19 6 6.2664 -7.1829 -4.6377 20 6 5.7469 -8.5671 -4.2408 21 9 6.2496 -9.1325 -3.0641 22 9 5.4619 -9.4701 -5.2706 23 6 2.6576 -4.1445 1.2123 24 6 1.7773 -4.8136 2.0525 25 6 2.2293 -5.3378 3.2476 26 6 3.5557 -5.1923 3.6104 27 6 4.4360 -4.5311 2.7737 28 6 3.9903 -4.0046 1.5771 29 1 -0.4849 0.8401 -0.0004 30 1 0.6247 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8903 32 1 4.4933 -5.0780 -0.7033 33 1 3.0680 -6.1400 -0.6086 34 1 6.3861 -6.9762 -5.7012 35 1 6.9995 -6.7134 -3.9817 36 1 0.7405 -4.9246 1.7712 37 1 1.5450 -5.8579 3.9016 38 1 3.9058 -5.5996 4.5475 39 1 5.4721 -4.4224 3.0582 40 1 4.6774 -3.4851 0.9258 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837985936.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:46 Heat of formation + Delta-G solvation = -160.523355 kcal Electronic energy + Delta-G solvation = -28857.355510 eV Core-core repulsion = 24274.271548 eV Total energy + Delta-G solvation = -4583.083962 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.80878 -48.48138 -42.06290 -41.25829 -39.57213 -38.07273 -36.79604 -36.57515 -34.84347 -31.97440 -31.23075 -30.53279 -28.68843 -26.36584 -24.84903 -23.84575 -23.65322 -23.36960 -21.89557 -20.73563 -19.73176 -18.98002 -18.71445 -18.42581 -17.97668 -17.86177 -17.33899 -17.21731 -17.01943 -16.64432 -16.43830 -16.00590 -15.57805 -15.41541 -15.10934 -14.82594 -14.70732 -14.64617 -14.48622 -14.32925 -14.11390 -14.00375 -13.64818 -13.47113 -13.40229 -13.06224 -12.70146 -12.49037 -12.45907 -12.22616 -12.16041 -12.05234 -11.87030 -11.74295 -11.30517 -11.10121 -10.68746 -10.22076 -9.86720 -9.31673 -8.27080 -6.41302 0.29184 0.46484 0.64586 0.89622 1.34633 1.36916 1.41911 1.49996 1.83259 1.96617 2.16898 2.37220 2.81221 3.00507 3.03580 3.16951 3.26928 3.40583 3.65478 3.83656 3.88364 4.04888 4.08640 4.29428 4.38706 4.51884 4.56324 4.60265 4.67226 4.68859 4.95469 5.02465 5.06675 5.12342 5.33670 5.50064 5.59508 5.61727 5.69426 5.96535 6.01414 6.33363 6.52225 6.64964 7.05314 7.29232 8.80832 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011582 B = 0.003144 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2416.929063 B = 8904.312145 C =10468.402740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.011 3.989 3 Si 0.968 3.032 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.543 4.543 8 H 0.053 0.947 9 C 0.267 3.733 10 N -0.554 5.554 11 C 0.509 3.491 12 O -0.555 6.555 13 C 0.068 3.932 14 O -0.336 6.336 15 C 0.489 3.511 16 O -0.510 6.510 17 C -0.179 4.179 18 H 0.185 0.815 19 C -0.107 4.107 20 C 0.216 3.784 21 F -0.159 7.159 22 F -0.152 7.152 23 C 0.114 3.886 24 C -0.137 4.137 25 C -0.103 4.103 26 C -0.118 4.118 27 C -0.103 4.103 28 C -0.139 4.139 29 H 0.269 0.731 30 H 0.009 0.991 31 H 0.028 0.972 32 H 0.117 0.883 33 H 0.113 0.887 34 H 0.179 0.821 35 H 0.139 0.861 36 H 0.119 0.881 37 H 0.154 0.846 38 H 0.160 0.840 39 H 0.154 0.846 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.952 -16.593 -0.965 21.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.188 4.188 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.195 1.195 7 C -0.581 4.581 8 H 0.071 0.929 9 C 0.148 3.852 10 N -0.282 5.282 11 C 0.297 3.703 12 O -0.433 6.433 13 C -0.009 4.009 14 O -0.252 6.252 15 C 0.332 3.668 16 O -0.398 6.398 17 C -0.199 4.199 18 H 0.203 0.797 19 C -0.144 4.144 20 C 0.179 3.821 21 F -0.139 7.139 22 F -0.133 7.133 23 C 0.024 3.976 24 C -0.156 4.156 25 C -0.121 4.121 26 C -0.135 4.135 27 C -0.121 4.121 28 C -0.159 4.159 29 H 0.078 0.922 30 H 0.027 0.973 31 H 0.046 0.954 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.197 0.803 35 H 0.157 0.843 36 H 0.137 0.863 37 H 0.172 0.828 38 H 0.178 0.822 39 H 0.171 0.829 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 12.727 -16.387 -1.232 20.786 hybrid contribution -0.391 0.929 0.036 1.009 sum 12.336 -15.458 -1.195 19.813 Atomic orbital electron populations 1.70043 1.07468 1.28267 1.50727 1.25817 0.95831 1.02939 0.94244 0.85357 0.78755 0.78577 0.78083 1.19169 1.20396 1.19478 1.21616 0.93249 0.91618 1.51627 0.92894 1.18937 0.87222 0.82721 0.96358 1.45671 1.44973 1.33813 1.03784 1.20441 0.81346 0.84977 0.83548 1.90697 1.58159 1.62366 1.32050 1.22715 1.01156 0.95680 0.81337 1.86520 1.63080 1.44774 1.30801 1.22778 0.75102 0.77386 0.91554 1.90752 1.49079 1.56773 1.43241 1.23298 1.01984 1.00316 0.94319 0.79727 1.24677 0.91726 0.90037 1.07955 1.19864 1.02666 0.82217 0.77306 1.93093 1.87444 1.86954 1.46439 1.93070 1.93842 1.69852 1.56503 1.18058 0.94117 0.97695 0.87762 1.21414 0.99621 0.98490 0.96120 1.21372 0.97025 0.98740 0.94987 1.21597 0.92935 0.98491 1.00526 1.21363 1.01428 0.96769 0.92544 1.21427 0.94561 1.00976 0.98908 0.92237 0.97286 0.95382 0.86568 0.86955 0.80321 0.84273 0.86338 0.82798 0.82235 0.82863 0.86582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.47 13.29 21.45 0.28 -55.19 16 2 C 0.01 0.63 5.46 84.65 0.46 1.10 16 3 Si 0.97 44.78 29.54 68.60 2.03 46.80 16 4 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 6 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 7 C -0.54 -31.40 9.39 25.60 0.24 -31.16 16 8 H 0.05 3.05 7.81 -2.91 -0.02 3.03 16 9 C 0.27 14.49 5.07 85.63 0.43 14.93 16 10 N -0.55 -24.56 2.51 -635.30 -1.59 -26.16 16 11 C 0.51 22.15 7.62 87.66 0.67 22.82 16 12 O -0.56 -29.08 16.13 15.69 0.25 -28.83 16 13 C 0.07 2.24 4.61 71.24 0.33 2.57 16 14 O -0.34 -10.68 9.76 -45.01 -0.44 -11.12 16 15 C 0.49 12.79 7.74 71.23 0.55 13.34 16 16 O -0.51 -15.40 14.90 21.96 0.33 -15.08 16 17 C -0.18 -3.08 6.28 -11.54 -0.07 -3.15 16 18 H 0.19 2.32 8.14 -2.39 -0.02 2.30 16 19 C -0.11 -1.12 10.21 30.62 0.31 -0.81 16 20 C 0.22 3.78 5.19 30.62 0.16 3.94 16 21 F -0.16 -3.82 15.72 44.97 0.71 -3.11 16 22 F -0.15 -2.67 17.60 44.97 0.79 -1.88 16 23 C 0.11 4.10 4.43 38.15 0.17 4.27 16 24 C -0.14 -4.24 9.64 22.39 0.22 -4.03 16 25 C -0.10 -2.37 10.04 22.25 0.22 -2.14 16 26 C -0.12 -2.37 10.04 22.29 0.22 -2.15 16 27 C -0.10 -2.36 10.04 22.25 0.22 -2.14 16 28 C -0.14 -4.29 8.44 22.39 0.19 -4.10 16 29 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 30 H 0.01 0.56 7.49 -2.38 -0.02 0.54 16 31 H 0.03 1.56 7.83 -2.39 -0.02 1.54 16 32 H 0.12 3.45 6.96 -2.39 -0.02 3.43 16 33 H 0.11 3.36 8.02 -2.39 -0.02 3.34 16 34 H 0.18 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.14 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.12 3.73 8.06 -2.91 -0.02 3.70 16 37 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 38 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 39 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 40 H 0.12 3.64 7.90 -2.91 -0.02 3.62 16 Total: -1.00 -78.75 365.94 7.76 -70.98 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 1.08 Total: 10.30 kcal Atomic # 6 Polarization: 8.95 SS G_CDS: 4.33 Total: 13.27 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -1.31 Total: -81.35 kcal Atomic # 8 Polarization: -55.17 SS G_CDS: 0.14 Total: -55.03 kcal Atomic # 9 Polarization: -6.49 SS G_CDS: 1.50 Total: -4.99 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -78.75 7.76 -70.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837985936.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.539 kcal (2) G-P(sol) polarization free energy of solvation -78.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds