Wall clock time and date at job start Tue Mar 31 2020 22:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99923 * 2 1 4 4 H 1.48495 * 109.47088 * 269.99719 * 3 2 1 5 5 H 1.48499 * 109.47461 * 30.00061 * 3 2 1 6 6 H 1.48501 * 109.46826 * 150.00044 * 3 2 1 7 7 C 1.37874 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99890 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99793 * 180.02562 * 7 2 1 10 10 N 1.46505 * 109.47122 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00279 * 179.97438 * 10 9 7 12 12 O 1.21583 * 119.99878 * 5.07640 * 11 10 9 13 13 N 1.34770 * 119.99881 * 185.06785 * 11 10 9 14 14 C 1.46931 * 120.62966 * 174.96736 * 13 11 10 15 15 C 1.53195 * 108.77581 * 233.63497 * 14 13 11 16 16 C 1.53041 * 109.31124 * 305.36217 * 15 14 13 17 17 O 1.42897 * 109.45856 * 181.38586 * 16 15 14 18 18 C 1.35697 * 116.99987 * 150.00048 * 17 16 15 19 19 C 1.38906 * 119.67116 * 179.97438 * 18 17 16 20 20 C 1.38382 * 119.12758 * 180.02562 * 19 18 17 21 21 C 1.38921 * 118.47035 * 359.97438 * 20 19 18 22 22 Cl 1.73597 * 120.36641 * 180.02562 * 21 20 19 23 23 C 1.38153 * 119.26591 * 359.97438 * 21 20 19 24 24 N 1.31966 * 120.81518 * 0.02562 * 23 21 20 25 25 C 1.53043 * 109.53869 * 61.36843 * 16 15 14 26 26 C 1.46928 * 120.63698 * 354.99439 * 13 11 10 27 27 H 0.97003 * 120.00252 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47605 * 60.00430 * 9 7 2 29 29 H 1.08999 * 109.47323 * 299.99796 * 9 7 2 30 30 H 0.97004 * 119.99571 * 359.97438 * 10 9 7 31 31 H 1.08989 * 109.58708 * 113.84507 * 14 13 11 32 32 H 1.09005 * 109.69844 * 353.48453 * 14 13 11 33 33 H 1.08991 * 109.49573 * 185.41078 * 15 14 13 34 34 H 1.09006 * 109.52467 * 65.32807 * 15 14 13 35 35 H 1.08995 * 109.45958 * 301.36012 * 16 15 14 36 36 H 1.07995 * 120.44062 * 0.02562 * 19 18 17 37 37 H 1.07998 * 120.76644 * 179.97438 * 20 19 18 38 38 H 1.07999 * 119.59116 * 180.02562 * 23 21 20 39 39 H 1.08997 * 109.50222 * 58.58352 * 25 16 15 40 40 H 1.08999 * 109.49663 * 178.68575 * 25 16 15 41 41 H 1.09003 * 109.58621 * 246.15545 * 26 13 11 42 42 H 1.08999 * 109.58355 * 6.57702 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5753 0.0010 11 6 5.3250 -2.8216 0.0009 12 8 6.1143 -1.9015 0.0941 13 7 5.7750 -4.0877 -0.1023 14 6 7.2137 -4.3641 -0.2145 15 6 7.4538 -5.2328 -1.4532 16 6 6.5779 -6.4850 -1.3707 17 8 6.8232 -7.3134 -2.5089 18 6 6.6677 -8.6511 -2.3423 19 6 6.8914 -9.5079 -3.4125 20 6 6.7291 -10.8701 -3.2301 21 6 6.3470 -11.3294 -1.9760 22 17 6.1298 -13.0282 -1.6923 23 6 6.1428 -10.4194 -0.9568 24 7 6.3059 -9.1261 -1.1625 25 6 5.1030 -6.0772 -1.3453 26 6 4.8363 -5.2181 -0.1054 27 1 -0.4851 0.8400 -0.0004 28 1 3.8746 -0.6801 0.8911 29 1 3.8752 -0.6804 -0.8888 30 1 3.3695 -3.3125 0.0010 31 1 7.5544 -4.8938 0.6750 32 1 7.7612 -3.4267 -0.3139 33 1 8.5030 -5.5249 -1.4948 34 1 7.1975 -4.6680 -2.3496 35 1 6.8176 -7.0366 -0.4617 36 1 7.1881 -9.1163 -4.3742 37 1 6.8956 -11.5601 -4.0440 38 1 5.8460 -10.7708 0.0204 39 1 4.8684 -5.5042 -2.2423 40 1 4.4792 -6.9704 -1.3101 41 1 4.9832 -5.8175 0.7931 42 1 3.8132 -4.8432 -0.1338 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838571889.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:53 Heat of formation + Delta-G solvation = -28.927456 kcal Electronic energy + Delta-G solvation = -26347.057394 eV Core-core repulsion = 22353.769290 eV Total energy + Delta-G solvation = -3993.288104 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.22926 -40.02985 -38.70512 -37.05183 -36.46204 -34.40172 -33.06395 -32.67316 -31.99546 -31.12977 -30.37505 -27.82370 -25.44532 -24.20791 -23.56862 -23.29134 -22.05188 -20.86585 -19.39362 -18.91577 -18.31804 -17.39707 -16.98386 -16.42752 -16.08035 -15.77205 -15.24881 -15.17798 -14.85156 -14.48222 -14.25258 -14.14253 -13.91159 -13.79532 -13.36365 -13.13091 -12.97238 -12.87313 -12.52392 -12.22758 -12.10930 -12.01996 -11.89977 -11.66123 -11.42852 -10.96057 -10.83403 -10.75281 -10.61774 -10.42955 -10.11146 -9.95497 -9.54841 -9.45344 -8.83532 -8.77615 -8.60121 -7.98788 -6.20115 -4.22024 0.51332 0.61491 1.58714 2.58316 3.03344 3.15131 3.28561 3.35531 3.44423 3.70707 3.77307 4.21391 4.34402 4.37686 4.39672 4.47152 4.53204 4.64721 4.88951 4.95276 5.05938 5.14488 5.15405 5.16416 5.26421 5.40371 5.43524 5.49912 5.60582 5.69733 5.78246 5.84723 5.89188 6.07896 6.60440 6.79277 6.83213 7.12408 7.23496 7.26603 7.37918 7.49291 8.25620 8.65134 8.79503 9.16630 9.41063 10.91798 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021532 B = 0.002027 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.102641 B =13811.536497 C =14545.589306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.237 3.763 10 N -0.722 5.722 11 C 0.700 3.300 12 O -0.600 6.600 13 N -0.639 5.639 14 C 0.137 3.863 15 C -0.132 4.132 16 C 0.093 3.907 17 O -0.295 6.295 18 C 0.334 3.666 19 C -0.181 4.181 20 C -0.030 4.030 21 C -0.135 4.135 22 Cl -0.057 7.057 23 C 0.160 3.840 24 N -0.524 5.524 25 C -0.149 4.149 26 C 0.118 3.882 27 H 0.267 0.733 28 H 0.024 0.976 29 H 0.018 0.982 30 H 0.392 0.608 31 H 0.064 0.936 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.169 0.831 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.241 -25.977 -5.137 30.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.096 0.904 9 C 0.114 3.886 10 N -0.377 5.377 11 C 0.402 3.598 12 O -0.480 6.480 13 N -0.379 5.379 14 C 0.014 3.986 15 C -0.171 4.171 16 C 0.037 3.963 17 O -0.201 6.201 18 C 0.155 3.845 19 C -0.202 4.202 20 C -0.056 4.056 21 C -0.164 4.164 22 Cl -0.028 7.028 23 C 0.003 3.997 24 N -0.248 5.248 25 C -0.188 4.188 26 C -0.006 4.006 27 H 0.077 0.923 28 H 0.042 0.958 29 H 0.036 0.964 30 H 0.227 0.773 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.111 0.889 36 H 0.169 0.831 37 H 0.168 0.832 38 H 0.186 0.814 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.089 0.911 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 15.532 -24.481 -4.602 29.355 hybrid contribution -0.065 -0.352 -0.583 0.684 sum 15.467 -24.833 -5.184 29.712 Atomic orbital electron populations 1.69880 1.06202 1.27410 1.49537 1.24782 0.94793 0.99172 0.93894 0.86808 0.80636 0.83172 0.79039 1.19877 1.20936 1.18397 1.21076 0.88532 0.95157 1.53217 0.90373 1.19379 0.94859 0.77661 0.96669 1.45583 1.03760 1.11092 1.77236 1.16002 0.83659 0.82122 0.78064 1.90851 1.55453 1.42891 1.58756 1.47316 1.06639 1.04702 1.79195 1.21284 0.81231 1.00340 0.95783 1.22102 0.99762 0.94655 1.00551 1.22461 0.95697 0.90047 0.88123 1.86343 1.82434 1.12290 1.39049 1.19970 0.89901 0.85363 0.89304 1.21111 1.07312 0.91743 1.00045 1.21346 0.93399 0.95012 0.95849 1.21825 1.10730 0.86929 0.96928 1.98382 1.95899 1.12218 1.96339 1.22436 0.92634 0.86077 0.98570 1.67474 1.18550 1.15948 1.22839 1.22362 0.95737 1.00695 0.99997 1.21514 0.94129 0.87755 0.97180 0.92280 0.95769 0.96438 0.77254 0.91791 0.88026 0.90014 0.90259 0.88884 0.83112 0.83151 0.81432 0.90418 0.90283 0.91128 0.89325 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.56 13.96 55.43 0.77 -25.79 16 2 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.38 6.54 56.52 0.37 -6.01 16 7 C -0.54 -14.96 9.83 -34.44 -0.34 -15.30 16 8 H 0.08 2.24 7.84 -52.49 -0.41 1.83 16 9 C 0.24 5.94 4.50 -5.19 -0.02 5.92 16 10 N -0.72 -15.16 5.46 -66.42 -0.36 -15.52 16 11 C 0.70 14.02 8.30 -86.92 -0.72 13.30 16 12 O -0.60 -14.19 15.79 5.29 0.08 -14.11 16 13 N -0.64 -9.52 2.97 -178.50 -0.53 -10.05 16 14 C 0.14 1.68 6.41 -3.71 -0.02 1.66 16 15 C -0.13 -1.36 5.73 -26.61 -0.15 -1.51 16 16 C 0.09 0.94 2.34 -26.69 -0.06 0.88 16 17 O -0.29 -3.09 9.76 -18.80 -0.18 -3.27 16 18 C 0.33 3.18 7.45 -17.13 -0.13 3.05 16 19 C -0.18 -1.33 10.04 -39.28 -0.39 -1.73 16 20 C -0.03 -0.19 9.97 -39.28 -0.39 -0.58 16 21 C -0.13 -0.94 6.34 -39.36 -0.25 -1.19 16 22 Cl -0.06 -0.37 28.99 -51.86 -1.50 -1.87 16 23 C 0.16 1.21 10.98 -17.53 -0.19 1.02 16 24 N -0.52 -4.94 8.64 -13.30 -0.11 -5.05 16 25 C -0.15 -1.61 5.70 -26.61 -0.15 -1.76 16 26 C 0.12 1.40 6.43 -3.71 -0.02 1.38 16 27 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.02 0.64 7.20 -51.93 -0.37 0.27 16 29 H 0.02 0.46 7.57 -51.93 -0.39 0.07 16 30 H 0.39 7.29 5.78 -40.82 -0.24 7.05 16 31 H 0.06 0.67 8.14 -51.94 -0.42 0.25 16 32 H 0.10 1.41 7.04 -51.93 -0.37 1.04 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 35 H 0.09 0.94 6.98 -51.93 -0.36 0.58 16 36 H 0.15 0.85 8.06 -52.49 -0.42 0.43 16 37 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 38 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.09 1.09 5.57 -51.93 -0.29 0.80 16 LS Contribution 362.60 15.07 5.46 5.46 Total: -1.00 -33.26 362.60 -9.40 -42.66 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.40 Total: 3.37 kcal Atomic # 6 Polarization: 10.20 SS G_CDS: -2.95 Total: 7.25 kcal Atomic # 7 Polarization: -56.18 SS G_CDS: -0.23 Total: -56.41 kcal Atomic # 8 Polarization: -17.28 SS G_CDS: -0.10 Total: -17.38 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.50 Total: -1.87 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.26 -9.40 -42.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838571889.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.729 kcal (2) G-P(sol) polarization free energy of solvation -33.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds