Wall clock time and date at job start Tue Mar 31 2020 22:34:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99923 * 2 1 4 4 H 1.48495 * 109.47088 * 269.99719 * 3 2 1 5 5 H 1.48499 * 109.47461 * 30.00061 * 3 2 1 6 6 H 1.48501 * 109.46826 * 150.00044 * 3 2 1 7 7 C 1.37874 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99890 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99793 * 180.02562 * 7 2 1 10 10 N 1.46505 * 109.47122 * 180.02562 * 9 7 2 11 11 C 1.34777 * 120.00279 * 179.97438 * 10 9 7 12 12 O 1.21583 * 119.99878 * 5.07640 * 11 10 9 13 13 N 1.34770 * 119.99881 * 185.06785 * 11 10 9 14 14 C 1.46931 * 120.62966 * 174.96736 * 13 11 10 15 15 C 1.53195 * 108.77581 * 233.63497 * 14 13 11 16 16 C 1.53041 * 109.31124 * 305.36217 * 15 14 13 17 17 O 1.42897 * 109.45856 * 181.38586 * 16 15 14 18 18 C 1.35697 * 116.99987 * 150.00048 * 17 16 15 19 19 C 1.38906 * 119.67116 * 179.97438 * 18 17 16 20 20 C 1.38382 * 119.12758 * 180.02562 * 19 18 17 21 21 C 1.38921 * 118.47035 * 359.97438 * 20 19 18 22 22 Cl 1.73597 * 120.36641 * 180.02562 * 21 20 19 23 23 C 1.38153 * 119.26591 * 359.97438 * 21 20 19 24 24 N 1.31966 * 120.81518 * 0.02562 * 23 21 20 25 25 C 1.53043 * 109.53869 * 61.36843 * 16 15 14 26 26 C 1.46928 * 120.63698 * 354.99439 * 13 11 10 27 27 H 0.97003 * 120.00252 * 0.02562 * 1 2 3 28 28 H 1.08993 * 109.47605 * 60.00430 * 9 7 2 29 29 H 1.08999 * 109.47323 * 299.99796 * 9 7 2 30 30 H 0.97004 * 119.99571 * 359.97438 * 10 9 7 31 31 H 1.08989 * 109.58708 * 113.84507 * 14 13 11 32 32 H 1.09005 * 109.69844 * 353.48453 * 14 13 11 33 33 H 1.08991 * 109.49573 * 185.41078 * 15 14 13 34 34 H 1.09006 * 109.52467 * 65.32807 * 15 14 13 35 35 H 1.08995 * 109.45958 * 301.36012 * 16 15 14 36 36 H 1.07995 * 120.44062 * 0.02562 * 19 18 17 37 37 H 1.07998 * 120.76644 * 179.97438 * 20 19 18 38 38 H 1.07999 * 119.59116 * 180.02562 * 23 21 20 39 39 H 1.08997 * 109.50222 * 58.58352 * 25 16 15 40 40 H 1.08999 * 109.49663 * 178.68575 * 25 16 15 41 41 H 1.09003 * 109.58621 * 246.15545 * 26 13 11 42 42 H 1.08999 * 109.58355 * 6.57702 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 1.4644 -2.1293 0.0014 9 6 3.5115 -1.1940 0.0011 10 7 3.9999 -2.5753 0.0010 11 6 5.3250 -2.8216 0.0009 12 8 6.1143 -1.9015 0.0941 13 7 5.7750 -4.0877 -0.1023 14 6 7.2137 -4.3641 -0.2145 15 6 7.4538 -5.2328 -1.4532 16 6 6.5779 -6.4850 -1.3707 17 8 6.8232 -7.3134 -2.5089 18 6 6.6677 -8.6511 -2.3423 19 6 6.8914 -9.5079 -3.4125 20 6 6.7291 -10.8701 -3.2301 21 6 6.3470 -11.3294 -1.9760 22 17 6.1298 -13.0282 -1.6923 23 6 6.1428 -10.4194 -0.9568 24 7 6.3059 -9.1261 -1.1625 25 6 5.1030 -6.0772 -1.3453 26 6 4.8363 -5.2181 -0.1054 27 1 -0.4851 0.8400 -0.0004 28 1 3.8746 -0.6801 0.8911 29 1 3.8752 -0.6804 -0.8888 30 1 3.3695 -3.3125 0.0010 31 1 7.5544 -4.8938 0.6750 32 1 7.7612 -3.4267 -0.3139 33 1 8.5030 -5.5249 -1.4948 34 1 7.1975 -4.6680 -2.3496 35 1 6.8176 -7.0366 -0.4617 36 1 7.1881 -9.1163 -4.3742 37 1 6.8956 -11.5601 -4.0440 38 1 5.8460 -10.7708 0.0204 39 1 4.8684 -5.5042 -2.2423 40 1 4.4792 -6.9704 -1.3101 41 1 4.9832 -5.8175 0.7931 42 1 3.8132 -4.8432 -0.1338 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838571889.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:52 Heat of formation + Delta-G solvation = -51.703567 kcal Electronic energy + Delta-G solvation = -26348.045041 eV Core-core repulsion = 22353.769290 eV Total energy + Delta-G solvation = -3994.275750 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.92702 -41.28691 -39.60407 -37.85987 -37.33256 -36.24500 -34.53729 -33.63312 -33.22498 -32.16707 -31.06141 -29.71316 -26.44874 -24.93923 -24.51688 -24.25940 -23.58827 -22.05394 -20.82628 -19.72485 -19.56636 -18.48666 -17.99693 -17.53645 -17.37071 -16.78946 -16.54542 -16.44665 -15.76633 -15.56366 -15.44289 -15.19098 -15.02235 -14.85657 -14.54522 -14.40284 -14.18845 -13.87847 -13.68992 -13.52617 -13.34491 -13.02701 -12.93966 -12.69825 -12.60316 -12.32333 -12.21747 -11.92107 -11.71324 -11.65195 -11.49204 -11.15281 -10.95760 -10.91475 -10.71242 -10.15689 -9.50885 -9.43757 -8.39508 -6.46395 -0.06258 0.08545 1.05569 1.33877 1.35674 1.49396 1.69289 1.88682 2.18284 2.29233 2.57239 2.95952 3.04883 3.15961 3.62580 3.66220 3.73214 3.88519 3.89955 3.95663 4.10752 4.23467 4.32719 4.43389 4.55890 4.63548 4.68693 4.73790 4.76591 4.78246 4.87763 4.91466 5.00320 5.05108 5.13755 5.24435 5.28928 5.52997 5.55238 5.89121 6.14625 6.18487 6.54565 6.66413 7.05928 7.18813 7.60196 8.75119 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021532 B = 0.002027 C = 0.001925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.102641 B =13811.536497 C =14545.589306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.027 3.973 3 Si 0.938 3.062 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.261 1.261 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.251 3.749 10 N -0.724 5.724 11 C 0.698 3.302 12 O -0.640 6.640 13 N -0.630 5.630 14 C 0.134 3.866 15 C -0.122 4.122 16 C 0.099 3.901 17 O -0.304 6.304 18 C 0.310 3.690 19 C -0.182 4.182 20 C -0.026 4.026 21 C -0.135 4.135 22 Cl -0.051 7.051 23 C 0.150 3.850 24 N -0.540 5.540 25 C -0.140 4.140 26 C 0.116 3.884 27 H 0.273 0.727 28 H 0.011 0.989 29 H 0.009 0.991 30 H 0.402 0.598 31 H 0.090 0.910 32 H 0.083 0.917 33 H 0.104 0.896 34 H 0.064 0.936 35 H 0.099 0.901 36 H 0.166 0.834 37 H 0.176 0.824 38 H 0.184 0.816 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.559 -27.662 -5.451 32.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.174 4.174 3 Si 0.762 3.238 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.185 1.185 7 C -0.583 4.583 8 H 0.076 0.924 9 C 0.126 3.874 10 N -0.380 5.380 11 C 0.399 3.601 12 O -0.522 6.522 13 N -0.368 5.368 14 C 0.011 3.989 15 C -0.161 4.161 16 C 0.043 3.957 17 O -0.212 6.212 18 C 0.132 3.868 19 C -0.202 4.202 20 C -0.051 4.051 21 C -0.164 4.164 22 Cl -0.023 7.023 23 C -0.006 4.006 24 N -0.264 5.264 25 C -0.179 4.179 26 C -0.007 4.007 27 H 0.082 0.918 28 H 0.029 0.971 29 H 0.027 0.973 30 H 0.240 0.760 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.122 0.878 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.184 0.816 37 H 0.194 0.806 38 H 0.201 0.799 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 16.858 -26.250 -4.922 31.583 hybrid contribution -0.477 -0.047 -0.497 0.690 sum 16.381 -26.296 -5.419 31.452 Atomic orbital electron populations 1.69978 1.07636 1.28626 1.50658 1.25583 0.95566 1.02654 0.93564 0.85846 0.79261 0.79247 0.79476 1.18953 1.19736 1.18491 1.21244 0.89809 0.94547 1.52694 0.92403 1.18967 0.93107 0.79768 0.95527 1.45329 1.04746 1.09946 1.77932 1.16112 0.82763 0.83408 0.77793 1.90816 1.56167 1.44745 1.60487 1.47360 1.08348 1.03553 1.77489 1.21494 0.79231 1.00225 0.97935 1.21986 1.01189 0.94187 0.98709 1.22322 0.94808 0.90009 0.88587 1.86317 1.82919 1.13004 1.38923 1.20232 0.91296 0.85108 0.90182 1.21337 1.06784 0.91940 1.00166 1.21655 0.92213 0.94979 0.96283 1.21933 1.10181 0.87151 0.97154 1.98389 1.95837 1.11717 1.96347 1.22727 0.92648 0.85703 0.99544 1.67422 1.19066 1.16821 1.23060 1.22257 0.96729 1.00372 0.98550 1.21717 0.93113 0.86964 0.98907 0.91821 0.97092 0.97308 0.76004 0.89211 0.89807 0.87777 0.91739 0.88304 0.81624 0.80634 0.79905 0.91956 0.89483 0.88692 0.89981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.82 13.96 21.45 0.30 -55.52 16 2 C 0.03 1.52 5.47 84.65 0.46 1.99 16 3 Si 0.94 44.57 27.47 68.60 1.88 46.45 16 4 H -0.26 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 6 H -0.26 -12.35 6.54 99.48 0.65 -11.70 16 7 C -0.54 -30.54 9.83 25.60 0.25 -30.29 16 8 H 0.06 3.40 7.84 -2.91 -0.02 3.37 16 9 C 0.25 12.69 4.50 85.63 0.39 13.07 16 10 N -0.72 -30.63 5.46 -482.30 -2.63 -33.27 16 11 C 0.70 27.99 8.30 179.06 1.49 29.47 16 12 O -0.64 -30.54 15.79 -3.98 -0.06 -30.60 16 13 N -0.63 -18.25 2.97 -836.91 -2.49 -20.74 16 14 C 0.13 3.10 6.41 86.36 0.55 3.66 16 15 C -0.12 -2.33 5.73 30.67 0.18 -2.16 16 16 C 0.10 1.85 2.34 30.62 0.07 1.93 16 17 O -0.30 -5.94 9.76 -90.17 -0.88 -6.82 16 18 C 0.31 5.42 7.45 84.79 0.63 6.05 16 19 C -0.18 -2.30 10.04 22.46 0.23 -2.08 16 20 C -0.03 -0.26 9.97 22.47 0.22 -0.03 16 21 C -0.13 -1.60 6.34 22.41 0.14 -1.45 16 22 Cl -0.05 -0.56 28.99 -2.72 -0.08 -0.64 16 23 C 0.15 2.02 10.98 84.65 0.93 2.94 16 24 N -0.54 -9.26 8.64 -308.87 -2.67 -11.93 16 25 C -0.14 -2.87 5.70 30.67 0.17 -2.69 16 26 C 0.12 2.60 6.43 86.36 0.56 3.16 16 27 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 28 H 0.01 0.59 7.20 -2.39 -0.02 0.58 16 29 H 0.01 0.47 7.57 -2.39 -0.02 0.45 16 30 H 0.40 15.09 5.78 -92.71 -0.54 14.55 16 31 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.08 2.30 7.04 -2.38 -0.02 2.28 16 33 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.10 1.77 6.98 -2.39 -0.02 1.75 16 36 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 37 H 0.18 0.79 8.06 -2.91 -0.02 0.77 16 38 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 39 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 41 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.08 1.96 5.57 -2.39 -0.01 1.95 16 Total: -1.00 -71.70 362.60 0.11 -71.60 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: 0.47 Total: 17.92 kcal Atomic # 6 Polarization: 17.28 SS G_CDS: 6.27 Total: 23.55 kcal Atomic # 7 Polarization: -113.97 SS G_CDS: -7.49 Total: -121.46 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -0.94 Total: -37.43 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.45 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -0.08 Total: -0.64 kcal Total: -71.70 0.11 -71.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838571889.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.892 kcal (2) G-P(sol) polarization free energy of solvation -71.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.595 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds