Wall clock time and date at job start Tue Mar 31 2020 22:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46907 * 2 1 4 4 C 1.50702 * 109.47214 * 240.00215 * 2 1 3 5 5 H 1.07998 * 119.99880 * 239.99961 * 4 2 1 6 6 C 1.37879 * 119.99826 * 59.99524 * 4 2 1 7 7 N 1.31509 * 120.00304 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99600 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47024 * 90.00246 * 8 6 4 10 10 H 1.48494 * 109.46912 * 210.00181 * 8 6 4 11 11 H 1.48506 * 109.47095 * 330.00341 * 8 6 4 12 12 C 1.52991 * 109.47157 * 119.99913 * 2 1 3 13 13 N 1.46501 * 109.47196 * 300.00115 * 12 2 1 14 14 C 1.34781 * 119.99983 * 179.97438 * 13 12 2 15 15 O 1.21588 * 120.00166 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99867 * 179.97438 * 14 13 12 17 17 N 1.40098 * 119.99953 * 0.02562 * 16 14 13 18 18 C 1.34779 * 119.99958 * 179.97438 * 17 16 14 19 19 O 1.21553 * 119.99852 * 0.02562 * 18 17 16 20 20 C 1.47848 * 119.99873 * 179.97438 * 18 17 16 21 21 C 1.39597 * 120.13916 * 359.97438 * 20 18 17 22 22 C 1.37944 * 119.87813 * 180.02562 * 21 20 18 23 23 C 1.38364 * 120.15917 * 359.97438 * 22 21 20 24 24 C 1.38445 * 120.27896 * 359.97438 * 23 22 21 25 25 Cl 1.73605 * 119.93763 * 180.02562 * 24 23 22 26 26 C 1.38094 * 120.12144 * 0.02562 * 24 23 22 27 27 H 1.08996 * 109.47306 * 299.99924 * 1 2 3 28 28 H 1.09001 * 109.47637 * 60.00187 * 1 2 3 29 29 H 1.09005 * 109.46779 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47142 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47275 * 300.00036 * 3 2 1 32 32 H 1.08996 * 109.47076 * 59.99934 * 3 2 1 33 33 H 0.96998 * 119.99732 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.46985 * 180.02562 * 12 2 1 35 35 H 1.09002 * 109.47304 * 59.99976 * 12 2 1 36 36 H 0.96996 * 120.00181 * 0.02562 * 13 12 2 37 37 H 0.96993 * 119.99657 * 179.97438 * 16 14 13 38 38 H 0.97007 * 120.00160 * 359.97438 * 17 16 14 39 39 H 1.07992 * 120.06214 * 359.97438 * 21 20 18 40 40 H 1.08001 * 119.91952 * 180.02562 * 22 21 20 41 41 H 1.07996 * 119.85804 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.08461 * 180.27464 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.3427 -2.1616 -4.4119 10 1 2.4865 -0.1413 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0306 2.4454 14 6 1.8768 -0.4914 3.6695 15 8 2.5759 -1.4799 3.7811 16 7 1.4280 0.1443 4.7700 17 7 0.6229 1.2837 4.6414 18 6 0.1736 1.9190 5.7418 19 8 0.4673 1.5037 6.8458 20 6 -0.6754 3.1217 5.6061 21 6 -1.0131 3.6021 4.3396 22 6 -1.8052 4.7250 4.2193 23 6 -2.2657 5.3753 5.3504 24 6 -1.9357 4.9040 6.6096 25 17 -2.5190 5.7265 8.0229 26 6 -1.1435 3.7809 6.7435 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 0.7094 1.1617 -3.4844 34 1 3.1300 -0.7208 1.2494 35 1 1.6766 -1.7489 1.2492 36 1 0.9936 0.7578 2.3564 37 1 1.6617 -0.1875 5.6509 38 1 0.3889 1.6153 3.7603 39 1 -0.6542 3.0960 3.4557 40 1 -2.0672 5.0970 3.2398 41 1 -2.8852 6.2543 5.2505 42 1 -0.8901 3.4112 7.7261 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000838754801.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:44 Heat of formation + Delta-G solvation = -9.568100 kcal Electronic energy + Delta-G solvation = -26571.335607 eV Core-core repulsion = 22578.886988 eV Total energy + Delta-G solvation = -3992.448619 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.90291 -39.79702 -38.69818 -36.87473 -36.59215 -35.80251 -33.34727 -32.41723 -31.45613 -30.91302 -30.04942 -25.85664 -25.78094 -24.99884 -24.58342 -23.12599 -21.44109 -21.18114 -19.53379 -18.78814 -18.33063 -17.27987 -16.26987 -15.97765 -15.95304 -15.83461 -15.44419 -14.96247 -14.96042 -14.76804 -14.33763 -14.26627 -13.84318 -13.77912 -13.11965 -12.99566 -12.46405 -12.31347 -12.01526 -11.99430 -11.65128 -11.42501 -11.37976 -11.31128 -10.94651 -10.77414 -10.65634 -10.50666 -10.30621 -10.12791 -9.76470 -9.62161 -9.45382 -9.31045 -8.90802 -8.79385 -8.47503 -8.28156 -6.10903 -4.20621 0.21442 0.66253 1.51375 1.77752 2.29660 3.19712 3.23205 3.23879 3.31114 3.35902 3.36231 3.89888 4.27805 4.33382 4.44539 4.52838 4.76572 4.88550 4.96763 5.16675 5.32143 5.56137 5.66251 5.74197 5.96190 6.09866 6.22263 6.27808 6.34015 6.56976 6.64484 6.65375 6.82111 6.89420 6.90294 7.15763 7.23652 7.43427 7.57246 7.62796 7.89729 8.00753 8.22081 8.30336 8.64656 8.80090 9.45746 10.90740 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.002450 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.571614 B =11423.703200 C =12993.213345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.506 4.506 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.146 3.854 13 N -0.729 5.729 14 C 0.707 3.293 15 O -0.574 6.574 16 N -0.537 5.537 17 N -0.519 5.519 18 C 0.562 3.438 19 O -0.530 6.530 20 C -0.114 4.114 21 C -0.081 4.081 22 C -0.107 4.107 23 C -0.082 4.082 24 C -0.044 4.044 25 Cl -0.061 7.061 26 C -0.048 4.048 27 H 0.002 0.998 28 H 0.087 0.913 29 H 0.029 0.971 30 H 0.029 0.971 31 H 0.087 0.913 32 H 0.002 0.998 33 H 0.260 0.740 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.387 0.613 37 H 0.439 0.561 38 H 0.421 0.579 39 H 0.136 0.864 40 H 0.145 0.855 41 H 0.141 0.859 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.457 11.967 14.582 20.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.544 4.544 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.525 5.525 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.023 3.977 13 N -0.386 5.386 14 C 0.406 3.594 15 O -0.448 6.448 16 N -0.295 5.295 17 N -0.270 5.270 18 C 0.349 3.651 19 O -0.406 6.406 20 C -0.119 4.119 21 C -0.100 4.100 22 C -0.125 4.125 23 C -0.101 4.101 24 C -0.071 4.071 25 Cl -0.032 7.032 26 C -0.068 4.068 27 H 0.021 0.979 28 H 0.106 0.894 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.106 0.894 32 H 0.021 0.979 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.222 0.778 37 H 0.285 0.715 38 H 0.264 0.736 39 H 0.153 0.847 40 H 0.163 0.837 41 H 0.158 0.842 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.831 11.092 15.197 20.379 hybrid contribution -0.083 0.093 -0.889 0.898 sum -7.915 11.185 14.308 19.811 Atomic orbital electron populations 1.21846 0.97742 0.99392 0.99873 1.18379 0.92796 0.92797 0.90510 1.21845 0.98853 0.98277 0.99874 1.20956 1.31597 1.12179 0.89714 0.92288 1.24866 0.94800 0.94890 0.98882 1.69780 1.36680 1.22695 1.23331 0.86556 0.79374 0.79393 0.82478 1.20685 1.21257 1.19864 1.21742 0.98316 0.95671 0.81969 1.45583 1.55333 1.32780 1.04859 1.15891 0.80596 0.82671 0.80241 1.91008 1.42870 1.26779 1.84106 1.44718 1.52413 1.22212 1.10179 1.44719 1.49429 1.22747 1.10070 1.18118 0.80253 0.83202 0.83532 1.90822 1.58236 1.66499 1.24995 1.19525 1.01670 0.96587 0.94092 1.21507 0.96145 0.96031 0.96271 1.21161 0.97179 0.95072 0.99118 1.21355 0.98466 0.99880 0.90420 1.20809 1.01186 0.96297 0.88762 1.98395 1.87366 1.77921 1.39541 1.21097 0.93714 0.92329 0.99648 0.97918 0.89419 0.95212 0.95205 0.89416 0.97918 0.92949 0.92366 0.92370 0.77772 0.71521 0.73574 0.84671 0.83683 0.84154 0.83303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 8.08 37.16 0.30 -2.39 16 2 C 0.06 1.20 0.50 -155.66 -0.08 1.12 16 3 C -0.13 -2.69 8.08 37.16 0.30 -2.39 16 4 C -0.51 -12.54 8.01 -34.44 -0.28 -12.82 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 6 C 0.07 1.68 5.15 -17.82 -0.09 1.58 16 7 N -0.89 -22.32 9.35 55.43 0.52 -21.80 16 8 Si 0.89 19.95 29.54 -169.99 -5.02 14.93 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 12 C 0.15 2.89 4.50 -4.05 -0.02 2.87 16 13 N -0.73 -11.95 4.92 -65.23 -0.32 -12.27 16 14 C 0.71 11.97 8.68 -86.91 -0.75 11.21 16 15 O -0.57 -11.88 17.18 5.29 0.09 -11.79 16 16 N -0.54 -7.41 6.26 27.64 0.17 -7.24 16 17 N -0.52 -5.80 6.21 30.53 0.19 -5.61 16 18 C 0.56 6.50 7.89 -12.33 -0.10 6.41 16 19 O -0.53 -7.67 16.19 5.32 0.09 -7.58 16 20 C -0.11 -1.05 5.87 -104.97 -0.62 -1.67 16 21 C -0.08 -0.58 9.54 -39.18 -0.37 -0.95 16 22 C -0.11 -0.65 10.03 -39.64 -0.40 -1.05 16 23 C -0.08 -0.53 9.82 -39.46 -0.39 -0.91 16 24 C -0.04 -0.35 6.31 -39.56 -0.25 -0.60 16 25 Cl -0.06 -0.47 28.95 -51.86 -1.50 -1.97 16 26 C -0.05 -0.44 9.38 -39.15 -0.37 -0.80 16 27 H 0.00 0.03 6.86 -51.93 -0.36 -0.32 16 28 H 0.09 2.01 6.07 -51.93 -0.32 1.70 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 2.01 6.07 -51.93 -0.32 1.70 16 32 H 0.00 0.03 6.86 -51.93 -0.36 -0.32 16 33 H 0.26 6.37 8.31 -40.82 -0.34 6.03 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 36 H 0.39 5.42 4.08 -40.82 -0.17 5.25 16 37 H 0.44 6.01 8.10 -182.61 -1.48 4.53 16 38 H 0.42 3.89 4.74 -182.59 -0.86 3.02 16 39 H 0.14 0.75 6.40 -52.49 -0.34 0.41 16 40 H 0.15 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.14 0.62 8.06 -52.49 -0.42 0.20 16 42 H 0.15 1.38 7.65 -52.49 -0.40 0.98 16 LS Contribution 363.33 15.07 5.48 5.48 Total: -1.00 -29.42 363.33 -10.09 -39.50 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -6.67 Total: 8.75 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -3.11 Total: -0.39 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 0.56 Total: -46.92 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: 0.18 Total: -19.37 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.97 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.42 -10.09 -39.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838754801.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.934 kcal (2) G-P(sol) polarization free energy of solvation -29.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds