Wall clock time and date at job start Tue Mar 31 2020 22:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46907 * 2 1 4 4 C 1.50702 * 109.47214 * 240.00215 * 2 1 3 5 5 H 1.07998 * 119.99880 * 239.99961 * 4 2 1 6 6 C 1.37879 * 119.99826 * 59.99524 * 4 2 1 7 7 N 1.31509 * 120.00304 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99600 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47024 * 90.00246 * 8 6 4 10 10 H 1.48494 * 109.46912 * 210.00181 * 8 6 4 11 11 H 1.48506 * 109.47095 * 330.00341 * 8 6 4 12 12 C 1.52991 * 109.47157 * 119.99913 * 2 1 3 13 13 N 1.46501 * 109.47196 * 300.00115 * 12 2 1 14 14 C 1.34781 * 119.99983 * 179.97438 * 13 12 2 15 15 O 1.21588 * 120.00166 * 0.02562 * 14 13 12 16 16 N 1.34779 * 119.99867 * 179.97438 * 14 13 12 17 17 N 1.40098 * 119.99953 * 0.02562 * 16 14 13 18 18 C 1.34779 * 119.99958 * 179.97438 * 17 16 14 19 19 O 1.21553 * 119.99852 * 0.02562 * 18 17 16 20 20 C 1.47848 * 119.99873 * 179.97438 * 18 17 16 21 21 C 1.39597 * 120.13916 * 359.97438 * 20 18 17 22 22 C 1.37944 * 119.87813 * 180.02562 * 21 20 18 23 23 C 1.38364 * 120.15917 * 359.97438 * 22 21 20 24 24 C 1.38445 * 120.27896 * 359.97438 * 23 22 21 25 25 Cl 1.73605 * 119.93763 * 180.02562 * 24 23 22 26 26 C 1.38094 * 120.12144 * 0.02562 * 24 23 22 27 27 H 1.08996 * 109.47306 * 299.99924 * 1 2 3 28 28 H 1.09001 * 109.47637 * 60.00187 * 1 2 3 29 29 H 1.09005 * 109.46779 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47142 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.47275 * 300.00036 * 3 2 1 32 32 H 1.08996 * 109.47076 * 59.99934 * 3 2 1 33 33 H 0.96998 * 119.99732 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.46985 * 180.02562 * 12 2 1 35 35 H 1.09002 * 109.47304 * 59.99976 * 12 2 1 36 36 H 0.96996 * 120.00181 * 0.02562 * 13 12 2 37 37 H 0.96993 * 119.99657 * 179.97438 * 16 14 13 38 38 H 0.97007 * 120.00160 * 359.97438 * 17 16 14 39 39 H 1.07992 * 120.06214 * 359.97438 * 21 20 18 40 40 H 1.08001 * 119.91952 * 180.02562 * 22 21 20 41 41 H 1.07996 * 119.85804 * 179.97438 * 23 22 21 42 42 H 1.07998 * 120.08461 * 180.27464 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8302 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.3427 -2.1616 -4.4119 10 1 2.4865 -0.1413 -5.1123 11 1 3.6293 -1.7583 -3.7122 12 6 2.0400 -0.7212 1.2492 13 7 1.5516 -0.0306 2.4454 14 6 1.8768 -0.4914 3.6695 15 8 2.5759 -1.4799 3.7811 16 7 1.4280 0.1443 4.7700 17 7 0.6229 1.2837 4.6414 18 6 0.1736 1.9190 5.7418 19 8 0.4673 1.5037 6.8458 20 6 -0.6754 3.1217 5.6061 21 6 -1.0131 3.6021 4.3396 22 6 -1.8052 4.7250 4.2193 23 6 -2.2657 5.3753 5.3504 24 6 -1.9357 4.9040 6.6096 25 17 -2.5190 5.7265 8.0229 26 6 -1.1435 3.7809 6.7435 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4426 -0.0005 31 1 1.6766 1.9564 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 0.7094 1.1617 -3.4844 34 1 3.1300 -0.7208 1.2494 35 1 1.6766 -1.7489 1.2492 36 1 0.9936 0.7578 2.3564 37 1 1.6617 -0.1875 5.6509 38 1 0.3889 1.6153 3.7603 39 1 -0.6542 3.0960 3.4557 40 1 -2.0672 5.0970 3.2398 41 1 -2.8852 6.2543 5.2505 42 1 -0.8901 3.4112 7.7261 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000838754801.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:43 Heat of formation + Delta-G solvation = -27.414221 kcal Electronic energy + Delta-G solvation = -26572.109473 eV Core-core repulsion = 22578.886988 eV Total energy + Delta-G solvation = -3993.222485 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.91302 -40.89847 -39.53548 -38.22204 -37.45642 -36.97593 -34.97159 -33.31609 -32.57349 -32.01709 -30.96681 -27.51208 -27.46239 -26.71304 -25.35594 -23.70353 -22.53855 -22.27509 -20.78461 -20.35400 -19.24467 -18.26436 -17.76101 -17.01337 -17.00963 -16.80042 -16.59496 -16.25206 -16.12945 -16.04423 -15.42788 -15.12209 -14.78778 -14.74378 -14.71693 -14.42375 -13.98333 -13.22045 -13.07509 -12.99992 -12.78370 -12.62631 -12.58087 -12.57367 -12.48653 -12.20490 -12.13170 -12.03561 -11.83052 -11.45471 -11.38551 -11.17034 -10.67727 -10.38243 -10.25405 -10.15469 -9.88302 -9.45112 -7.99756 -6.13676 -0.41686 0.09905 0.58554 1.08537 1.44877 1.48291 1.49192 1.55960 1.95868 1.96478 2.49615 2.62195 3.08857 3.24885 3.74627 3.80164 3.92671 4.00896 4.24585 4.38745 4.39701 4.55064 4.73362 4.79678 4.96704 4.99372 5.08373 5.08454 5.13119 5.22519 5.24145 5.24307 5.29826 5.50050 5.57567 5.63074 5.72539 5.72720 6.11525 6.21644 6.24976 6.47360 6.52436 6.89671 7.07984 7.32435 7.53782 8.99032 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015900 B = 0.002450 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.571614 B =11423.703200 C =12993.213345 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.052 3.948 3 C -0.123 4.123 4 C -0.527 4.527 5 H 0.044 0.956 6 C 0.032 3.968 7 N -0.895 5.895 8 Si 0.939 3.061 9 H -0.281 1.281 10 H -0.284 1.284 11 H -0.278 1.278 12 C 0.161 3.839 13 N -0.718 5.718 14 C 0.711 3.289 15 O -0.614 6.614 16 N -0.529 5.529 17 N -0.509 5.509 18 C 0.566 3.434 19 O -0.564 6.564 20 C -0.128 4.128 21 C -0.077 4.077 22 C -0.102 4.102 23 C -0.074 4.074 24 C -0.053 4.053 25 Cl -0.064 7.064 26 C -0.060 4.060 27 H 0.041 0.959 28 H 0.065 0.935 29 H 0.017 0.983 30 H 0.017 0.983 31 H 0.065 0.935 32 H 0.041 0.959 33 H 0.260 0.740 34 H 0.043 0.957 35 H 0.043 0.957 36 H 0.401 0.599 37 H 0.441 0.559 38 H 0.432 0.568 39 H 0.155 0.845 40 H 0.175 0.825 41 H 0.163 0.837 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.700 13.722 14.279 22.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.052 3.948 3 C -0.181 4.181 4 C -0.566 4.566 5 H 0.062 0.938 6 C -0.168 4.168 7 N -0.534 5.534 8 Si 0.767 3.233 9 H -0.207 1.207 10 H -0.210 1.210 11 H -0.203 1.203 12 C 0.037 3.963 13 N -0.375 5.375 14 C 0.410 3.590 15 O -0.491 6.491 16 N -0.285 5.285 17 N -0.262 5.262 18 C 0.355 3.645 19 O -0.442 6.442 20 C -0.132 4.132 21 C -0.096 4.096 22 C -0.120 4.120 23 C -0.093 4.093 24 C -0.080 4.080 25 Cl -0.035 7.035 26 C -0.080 4.080 27 H 0.059 0.941 28 H 0.084 0.916 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.084 0.916 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.239 0.761 37 H 0.287 0.713 38 H 0.277 0.723 39 H 0.173 0.827 40 H 0.192 0.808 41 H 0.181 0.819 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -9.107 12.892 14.899 21.705 hybrid contribution 0.256 -0.386 -0.749 0.881 sum -8.851 12.506 14.150 20.855 Atomic orbital electron populations 1.21700 0.96808 0.98887 1.00663 1.18369 0.93474 0.93169 0.89833 1.21699 0.98080 0.97614 1.00663 1.21248 1.31661 1.12161 0.91494 0.93781 1.25352 0.95214 0.95575 1.00645 1.69867 1.36928 1.23047 1.23554 0.85849 0.78597 0.78543 0.80315 1.20711 1.20951 1.20336 1.21327 0.97308 0.95056 0.82620 1.45205 1.55444 1.32996 1.03840 1.15819 0.80247 0.82283 0.80651 1.90985 1.44624 1.28664 1.84840 1.44422 1.52034 1.22723 1.09297 1.44727 1.48969 1.21712 1.10794 1.18546 0.79728 0.83398 0.82861 1.90808 1.59518 1.67526 1.26304 1.19347 1.02560 0.96116 0.95210 1.21770 0.95715 0.96280 0.95837 1.21519 0.96023 0.94208 1.00232 1.21697 0.97704 1.00177 0.89734 1.20896 1.01431 0.96190 0.89435 1.98394 1.87348 1.77836 1.39932 1.21066 0.94530 0.93099 0.99286 0.94064 0.91587 0.96347 0.96335 0.91583 0.94063 0.93030 0.93869 0.93851 0.76108 0.71285 0.72276 0.82716 0.80809 0.81898 0.84542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.83 8.08 71.98 0.58 -4.25 16 2 C 0.05 2.19 0.50 -52.93 -0.03 2.16 16 3 C -0.12 -4.83 8.08 71.98 0.58 -4.25 16 4 C -0.53 -26.16 8.01 25.60 0.21 -25.96 16 5 H 0.04 2.26 7.74 -2.91 -0.02 2.24 16 6 C 0.03 1.60 5.15 84.66 0.44 2.04 16 7 N -0.90 -44.50 9.35 21.45 0.20 -44.30 16 8 Si 0.94 40.79 29.54 68.60 2.03 42.82 16 9 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 10 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 12 C 0.16 6.27 4.50 86.38 0.39 6.66 16 13 N -0.72 -22.16 4.92 -478.53 -2.36 -24.51 16 14 C 0.71 23.28 8.68 179.05 1.55 24.84 16 15 O -0.61 -25.38 17.18 -3.99 -0.07 -25.45 16 16 N -0.53 -13.92 6.26 -184.74 -1.16 -15.08 16 17 N -0.51 -10.34 6.21 -175.60 -1.09 -11.43 16 18 C 0.57 12.38 7.89 86.79 0.68 13.07 16 19 O -0.56 -16.21 16.19 -3.88 -0.06 -16.28 16 20 C -0.13 -2.13 5.87 -20.09 -0.12 -2.24 16 21 C -0.08 -0.85 9.54 22.53 0.21 -0.63 16 22 C -0.10 -0.83 10.03 22.23 0.22 -0.61 16 23 C -0.07 -0.71 9.82 22.35 0.22 -0.49 16 24 C -0.05 -0.74 6.31 22.28 0.14 -0.60 16 25 Cl -0.06 -0.91 28.95 -2.72 -0.08 -0.99 16 26 C -0.06 -1.03 9.38 22.55 0.21 -0.82 16 27 H 0.04 1.26 6.86 -2.39 -0.02 1.24 16 28 H 0.07 2.92 6.07 -2.39 -0.01 2.91 16 29 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 30 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.07 2.93 6.07 -2.39 -0.01 2.91 16 32 H 0.04 1.26 6.86 -2.39 -0.02 1.24 16 33 H 0.26 12.53 8.31 -92.71 -0.77 11.76 16 34 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 35 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.40 9.89 4.08 -92.71 -0.38 9.52 16 37 H 0.44 11.80 8.10 -213.33 -1.73 10.08 16 38 H 0.43 6.56 4.74 -213.31 -1.01 5.55 16 39 H 0.16 1.01 6.40 -2.91 -0.02 1.00 16 40 H 0.17 0.46 8.06 -2.91 -0.02 0.44 16 41 H 0.16 0.81 8.06 -2.91 -0.02 0.78 16 42 H 0.14 2.60 7.65 -2.91 -0.02 2.58 16 Total: -1.00 -64.06 363.33 0.69 -63.37 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: -2.02 Total: 22.93 kcal Atomic # 6 Polarization: 3.62 SS G_CDS: 5.30 Total: 8.92 kcal Atomic # 7 Polarization: -90.91 SS G_CDS: -4.40 Total: -95.32 kcal Atomic # 8 Polarization: -41.59 SS G_CDS: -0.13 Total: -41.72 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -64.06 0.69 -63.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000838754801.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.954 kcal (2) G-P(sol) polarization free energy of solvation -64.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds