Wall clock time and date at job start Tue Mar 31 2020 22:43:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31840 * 119.66000 * 2 1 4 4 C 1.31951 * 121.77723 * 180.02562 * 3 2 1 5 5 Cl 1.73608 * 119.54671 * 180.02562 * 4 3 2 6 6 C 1.38438 * 120.90153 * 359.97438 * 4 3 2 7 7 C 1.38440 * 119.22956 * 0.04342 * 6 4 3 8 8 C 1.38856 * 119.66314 * 180.02562 * 2 1 3 9 9 N 1.39789 * 120.47861 * 359.70136 * 8 2 1 10 10 C 1.34785 * 120.00170 * 145.95396 * 9 8 2 11 11 O 1.21381 * 119.99520 * 4.32089 * 10 9 8 12 12 C 1.49350 * 120.00124 * 184.31536 * 10 9 8 13 13 O 1.21355 * 119.99640 * 0.02562 * 12 10 9 14 14 N 1.34775 * 119.99704 * 179.97438 * 12 10 9 15 15 C 1.46501 * 119.99441 * 180.02562 * 14 12 10 16 16 C 1.53002 * 109.46676 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.47340 * 300.00126 * 16 15 14 18 18 C 1.53005 * 109.47301 * 60.00104 * 16 15 14 19 19 C 1.50698 * 109.46976 * 180.02562 * 16 15 14 20 20 H 1.08000 * 120.00396 * 359.97438 * 19 16 15 21 21 C 1.37885 * 120.00149 * 180.02562 * 19 16 15 22 22 N 1.31512 * 119.99560 * 359.97438 * 21 19 16 23 23 Si 1.86793 * 120.00065 * 179.97438 * 21 19 16 24 24 H 1.48501 * 109.47269 * 90.00057 * 23 21 19 25 25 H 1.48498 * 109.47337 * 209.99869 * 23 21 19 26 26 H 1.48498 * 109.47218 * 329.99942 * 23 21 19 27 27 H 1.08998 * 109.47011 * 269.97596 * 1 2 3 28 28 H 1.08999 * 109.47415 * 29.97424 * 1 2 3 29 29 H 1.09008 * 109.47092 * 149.97775 * 1 2 3 30 30 H 1.08000 * 120.38363 * 180.02562 * 6 4 3 31 31 H 1.08002 * 120.81513 * 179.97438 * 7 6 4 32 32 H 0.97000 * 120.00240 * 325.95598 * 9 8 2 33 33 H 0.97000 * 119.99888 * 0.02562 * 14 12 10 34 34 H 1.08996 * 109.47593 * 299.99999 * 15 14 12 35 35 H 1.09003 * 109.47203 * 60.00927 * 15 14 12 36 36 H 1.09004 * 109.47209 * 59.99899 * 17 16 15 37 37 H 1.09002 * 109.47542 * 180.02562 * 17 16 15 38 38 H 1.08998 * 109.47082 * 300.00347 * 17 16 15 39 39 H 1.08998 * 109.46763 * 59.99604 * 18 16 15 40 40 H 1.09001 * 109.46860 * 179.97438 * 18 16 15 41 41 H 1.08996 * 109.46816 * 300.00155 * 18 16 15 42 42 H 0.97000 * 119.99748 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1594 1.1457 0.0000 4 6 3.4780 1.1944 -0.0005 5 17 4.2778 2.7353 0.0002 6 6 4.2324 0.0336 -0.0005 7 6 3.5878 -1.1915 -0.0009 8 6 2.1942 -1.2066 -0.0005 9 7 1.4983 -2.4189 0.0052 10 6 1.9986 -3.4863 -0.6483 11 8 3.0898 -3.4184 -1.1754 12 6 1.2103 -4.7526 -0.7237 13 8 0.1191 -4.8203 -0.1969 14 7 1.7104 -5.8197 -1.3776 15 6 0.9369 -7.0616 -1.4520 16 6 1.7257 -8.1070 -2.2432 17 6 1.9891 -7.5847 -3.6570 18 6 3.0588 -8.3777 -1.5429 19 6 0.9298 -9.3844 -2.3203 20 1 -0.0413 -9.4447 -1.8515 21 6 1.4418 -10.4764 -2.9885 22 7 2.6245 -10.4031 -3.5589 23 14 0.4555 -12.0599 -3.0834 24 1 -0.4049 -12.0355 -4.2935 25 1 1.3831 -13.2171 -3.1590 26 1 -0.3958 -12.1862 -1.8733 27 1 -0.3633 -0.0004 1.0276 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3634 -0.8898 -0.5142 30 1 5.3113 0.0833 -0.0005 31 1 4.1510 -2.1131 -0.0014 32 1 0.6553 -2.4920 0.4794 33 1 2.5825 -5.7654 -1.7989 34 1 0.7496 -7.4340 -0.4449 35 1 -0.0130 -6.8688 -1.9507 36 1 2.5646 -6.6606 -3.6016 37 1 2.5507 -8.3296 -4.2208 38 1 1.0394 -7.3919 -4.1559 39 1 2.8711 -8.7497 -0.5357 40 1 3.6205 -9.1227 -2.1063 41 1 3.6342 -7.4536 -1.4875 42 1 2.9848 -11.1715 -4.0286 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839579203.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:41 Heat of formation + Delta-G solvation = -42.798220 kcal Electronic energy + Delta-G solvation = -26434.379004 eV Core-core repulsion = 22440.489419 eV Total energy + Delta-G solvation = -3993.889586 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.54917 -40.20465 -38.62546 -37.05312 -36.64402 -35.57888 -33.54565 -33.42172 -31.23553 -30.99502 -28.12237 -26.56133 -25.80886 -25.43285 -24.59254 -23.08703 -22.43638 -20.49875 -19.33720 -18.81514 -17.63976 -17.37603 -16.81423 -16.51755 -15.95219 -15.74542 -15.25099 -14.97739 -14.75704 -14.37607 -14.26606 -13.83643 -13.73400 -13.33907 -13.01541 -12.93267 -12.81516 -12.63787 -12.31895 -12.00937 -11.73330 -11.62734 -11.49259 -11.26912 -11.08729 -10.94767 -10.76453 -10.48499 -10.28893 -10.22019 -10.01971 -9.74341 -9.65778 -9.37939 -8.88747 -8.78229 -8.64080 -8.44360 -6.09152 -4.20176 0.34652 0.74547 1.38282 1.44857 2.17846 3.06011 3.23783 3.26881 3.31351 3.34107 3.56183 3.89045 4.22640 4.32274 4.45685 4.47839 4.66400 4.98947 5.12627 5.17745 5.18807 5.32936 5.55883 5.62755 5.71631 5.98472 6.12122 6.15586 6.35952 6.45462 6.61886 6.74626 6.75501 6.83406 6.91184 7.23208 7.27802 7.35491 7.46568 7.60859 7.69609 7.92235 8.01509 8.13566 8.30427 8.79940 9.46109 10.92267 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.030196 B = 0.002031 C = 0.001944 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 927.065903 B =13784.789179 C =14402.610282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.130 3.870 3 N -0.460 5.460 4 C 0.162 3.838 5 Cl -0.032 7.032 6 C -0.139 4.139 7 C -0.063 4.063 8 C 0.101 3.899 9 N -0.642 5.642 10 C 0.510 3.490 11 O -0.497 6.497 12 C 0.499 3.501 13 O -0.529 6.529 14 N -0.675 5.675 15 C 0.127 3.873 16 C 0.056 3.944 17 C -0.134 4.134 18 C -0.134 4.134 19 C -0.508 4.508 20 H 0.059 0.941 21 C 0.067 3.933 22 N -0.884 5.884 23 Si 0.895 3.105 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 H 0.086 0.914 28 H 0.087 0.913 29 H 0.080 0.920 30 H 0.151 0.849 31 H 0.164 0.836 32 H 0.427 0.573 33 H 0.412 0.588 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.008 0.992 37 H 0.088 0.912 38 H 0.028 0.972 39 H 0.028 0.972 40 H 0.088 0.912 41 H 0.008 0.992 42 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.595 20.522 7.433 21.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.011 4.011 3 N -0.172 5.172 4 C -0.003 4.003 5 Cl -0.003 7.003 6 C -0.160 4.160 7 C -0.091 4.091 8 C 0.003 3.997 9 N -0.290 5.290 10 C 0.293 3.707 11 O -0.370 6.370 12 C 0.278 3.722 13 O -0.407 6.407 14 N -0.326 5.326 15 C 0.006 3.994 16 C 0.055 3.945 17 C -0.192 4.192 18 C -0.192 4.192 19 C -0.547 4.547 20 H 0.077 0.923 21 C -0.135 4.135 22 N -0.522 5.522 23 Si 0.723 3.277 24 H -0.207 1.207 25 H -0.212 1.212 26 H -0.199 1.199 27 H 0.104 0.896 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.169 0.831 31 H 0.181 0.819 32 H 0.267 0.733 33 H 0.249 0.751 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.027 0.973 37 H 0.106 0.894 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.106 0.894 41 H 0.027 0.973 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 1.308 21.193 7.278 22.446 hybrid contribution 0.133 -1.407 -0.089 1.416 sum 1.441 19.786 7.189 21.101 Atomic orbital electron populations 1.20793 0.87567 1.04534 1.03845 1.21021 0.97130 0.85562 0.97381 1.66818 1.08433 1.28745 1.13191 1.21593 0.89733 0.87659 1.01333 1.98407 1.76770 1.28624 1.96547 1.21777 1.01979 0.90338 1.01895 1.21821 0.92675 0.99417 0.95171 1.18602 0.92229 0.86098 1.02748 1.43130 1.26216 1.08069 1.51623 1.20842 0.86536 0.85169 0.78167 1.90761 1.19827 1.82776 1.43630 1.19591 0.86497 0.84437 0.81695 1.90760 1.20356 1.83270 1.46296 1.46247 1.22911 1.12233 1.51228 1.22021 0.94792 0.81360 1.01276 1.18396 0.92898 0.91858 0.91348 1.21869 0.99485 0.98230 0.99606 1.21864 0.98543 0.99289 0.99472 1.20925 1.03390 0.95672 1.34681 0.92306 1.24889 0.94961 0.98655 0.95016 1.69799 1.16629 1.30477 1.35283 0.86543 0.79850 0.82804 0.78504 1.20680 1.21241 1.19888 0.89571 0.89410 0.90111 0.83141 0.81894 0.73337 0.75051 0.91720 0.91730 0.97331 0.89367 0.95285 0.95279 0.89366 0.97325 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.79 9.64 36.01 0.35 -0.45 16 2 C 0.13 1.31 6.80 -82.36 -0.56 0.75 16 3 N -0.46 -5.16 10.25 -6.45 -0.07 -5.23 16 4 C 0.16 1.69 7.27 -17.43 -0.13 1.56 16 5 Cl -0.03 -0.29 29.10 -51.86 -1.51 -1.80 16 6 C -0.14 -1.29 9.87 -39.43 -0.39 -1.68 16 7 C -0.06 -0.66 8.82 -39.09 -0.34 -1.01 16 8 C 0.10 1.06 6.30 -83.58 -0.53 0.54 16 9 N -0.64 -6.75 4.75 -10.19 -0.05 -6.80 16 10 C 0.51 6.75 7.74 -11.63 -0.09 6.66 16 11 O -0.50 -7.27 13.92 5.47 0.08 -7.20 16 12 C 0.50 7.71 7.89 -11.63 -0.09 7.61 16 13 O -0.53 -8.96 16.48 5.49 0.09 -8.87 16 14 N -0.67 -11.30 4.95 -60.76 -0.30 -11.60 16 15 C 0.13 2.47 4.50 -4.04 -0.02 2.45 16 16 C 0.06 1.23 0.50 -155.66 -0.08 1.15 16 17 C -0.13 -2.93 8.08 37.16 0.30 -2.63 16 18 C -0.13 -2.91 8.08 37.16 0.30 -2.61 16 19 C -0.51 -12.68 8.01 -34.44 -0.28 -12.95 16 20 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 21 C 0.07 1.69 5.15 -17.82 -0.09 1.60 16 22 N -0.88 -22.90 9.35 55.43 0.52 -22.39 16 23 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 24 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.29 -6.45 7.11 56.52 0.40 -6.04 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 27 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.08 0.54 7.16 -51.92 -0.37 0.17 16 30 H 0.15 1.04 8.06 -52.49 -0.42 0.62 16 31 H 0.16 1.75 6.27 -52.49 -0.33 1.42 16 32 H 0.43 3.75 7.32 -40.82 -0.30 3.45 16 33 H 0.41 6.76 5.63 -40.82 -0.23 6.53 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.01 0.15 6.86 -51.93 -0.36 -0.20 16 37 H 0.09 2.14 6.07 -51.93 -0.32 1.83 16 38 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.09 2.14 6.07 -51.93 -0.32 1.82 16 41 H 0.01 0.15 6.86 -51.93 -0.36 -0.20 16 42 H 0.26 6.55 8.31 -40.82 -0.34 6.22 16 LS Contribution 363.51 15.07 5.48 5.48 Total: -1.00 -27.47 363.51 -7.50 -34.97 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -5.07 Total: 7.39 kcal Atomic # 6 Polarization: 2.63 SS G_CDS: -1.65 Total: 0.99 kcal Atomic # 7 Polarization: -46.12 SS G_CDS: 0.10 Total: -46.01 kcal Atomic # 8 Polarization: -16.23 SS G_CDS: 0.17 Total: -16.07 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.51 Total: -1.80 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.47 -7.50 -34.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839579203.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.826 kcal (2) G-P(sol) polarization free energy of solvation -27.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds