Wall clock time and date at job start Tue Mar 31 2020 22:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38493 * 120.38381 * 2 1 4 4 C 1.39324 * 118.36784 * 179.97438 * 3 2 1 5 5 N 1.39792 * 120.47319 * 179.97438 * 4 3 2 6 6 C 1.34775 * 120.00320 * 325.15765 * 5 4 3 7 7 O 1.21382 * 119.99834 * 4.75085 * 6 5 4 8 8 C 1.49355 * 120.00068 * 184.74926 * 6 5 4 9 9 O 1.21362 * 119.99664 * 0.02562 * 8 6 5 10 10 N 1.34775 * 120.00068 * 179.97438 * 8 6 5 11 11 C 1.46490 * 120.00142 * 180.02562 * 10 8 6 12 12 C 1.53003 * 109.47577 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47233 * 300.00265 * 12 11 10 14 14 C 1.53004 * 109.46553 * 59.99935 * 12 11 10 15 15 C 1.50699 * 109.47462 * 179.97438 * 12 11 10 16 16 H 1.07997 * 119.99601 * 1.39648 * 15 12 11 17 17 C 1.37878 * 120.00074 * 181.39774 * 15 12 11 18 18 N 1.31510 * 120.00051 * 192.03421 * 17 15 12 19 19 Si 1.86807 * 119.99812 * 12.03647 * 17 15 12 20 20 H 1.48501 * 109.46983 * 84.65305 * 19 17 15 21 21 H 1.48499 * 109.46865 * 204.65586 * 19 17 15 22 22 H 1.48500 * 109.47241 * 324.65654 * 19 17 15 23 23 C 1.38897 * 119.04516 * 359.97438 * 4 3 2 24 24 N 1.31810 * 120.67229 * 0.02562 * 23 4 3 25 25 C 1.31976 * 121.78187 * 0.02562 * 24 23 4 26 26 Cl 1.73605 * 119.54823 * 179.97438 * 25 24 23 27 27 H 1.09005 * 109.47327 * 89.99877 * 1 2 3 28 28 H 1.08998 * 109.47201 * 210.00285 * 1 2 3 29 29 H 1.09008 * 109.47040 * 329.99969 * 1 2 3 30 30 H 1.08001 * 120.81053 * 359.95641 * 3 2 1 31 31 H 0.97006 * 119.99569 * 145.15444 * 5 4 3 32 32 H 0.97001 * 119.99509 * 359.97438 * 10 8 6 33 33 H 1.09004 * 109.47448 * 299.99791 * 11 10 8 34 34 H 1.09005 * 109.47172 * 59.99749 * 11 10 8 35 35 H 1.09005 * 109.46855 * 68.95725 * 13 12 11 36 36 H 1.09000 * 109.47074 * 188.96086 * 13 12 11 37 37 H 1.09002 * 109.46818 * 308.96174 * 13 12 11 38 38 H 1.09002 * 109.47044 * 60.00141 * 14 12 11 39 39 H 1.08999 * 109.46902 * 180.02562 * 14 12 11 40 40 H 1.08996 * 109.47336 * 300.00298 * 14 12 11 41 41 H 0.97001 * 119.99946 * 179.97438 * 18 17 15 42 42 H 1.07997 * 119.65945 * 179.72004 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2074 1.1947 0.0000 4 6 3.5998 1.1457 0.0005 5 7 4.3507 2.3248 0.0000 6 6 3.9049 3.4074 -0.6677 7 8 2.8124 3.3871 -1.1962 8 6 4.7553 4.6320 -0.7573 9 8 5.8478 4.6520 -0.2293 10 7 4.3098 5.7143 -1.4255 11 6 5.1440 6.9152 -1.5139 12 6 4.4098 7.9881 -2.3207 13 6 4.1237 7.4611 -3.7283 14 6 3.0903 8.3336 -1.6275 15 6 5.2678 9.2237 -2.4111 16 1 6.2488 9.2341 -1.9595 17 6 4.8004 10.3409 -3.0703 18 7 5.6219 11.3269 -3.3570 19 14 3.0001 10.4537 -3.5560 20 1 2.2090 10.9659 -2.4084 21 1 2.8556 11.3784 -4.7090 22 1 2.5047 9.1066 -3.9368 23 6 4.2310 -0.0916 0.0016 24 7 3.5267 -1.2057 0.0016 25 6 2.2070 -1.1938 0.0001 26 17 1.3373 -2.6963 -0.0005 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6870 2.1411 -0.0007 31 1 5.1926 2.3639 0.4803 32 1 3.4370 5.6978 -1.8484 33 1 5.3481 7.2905 -0.5110 34 1 6.0839 6.6692 -2.0080 35 1 3.3781 6.6678 -3.6746 36 1 3.7466 8.2728 -4.3504 37 1 5.0427 7.0673 -4.1625 38 1 3.2941 8.7090 -0.6247 39 1 2.5670 9.0976 -2.2025 40 1 2.4696 7.4401 -1.5617 41 1 5.2932 12.1127 -3.8211 42 1 5.3098 -0.1411 -0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839580995.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:56 Heat of formation + Delta-G solvation = -23.700227 kcal Electronic energy + Delta-G solvation = -26424.378729 eV Core-core repulsion = 22431.317295 eV Total energy + Delta-G solvation = -3993.061434 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.55606 -40.31251 -38.77788 -37.07635 -36.97733 -35.65312 -34.20202 -33.50971 -31.59849 -30.77689 -27.86814 -27.06642 -26.47074 -25.32745 -24.72134 -23.64376 -22.16136 -20.58362 -19.62449 -18.78203 -17.76895 -17.54455 -17.12710 -16.56776 -16.16423 -15.94114 -15.32002 -15.18218 -14.97867 -14.50198 -14.30545 -13.99424 -13.79243 -13.36056 -13.23988 -13.20659 -13.02154 -12.72878 -12.63224 -12.32125 -12.24540 -12.15940 -11.78529 -11.51275 -11.50646 -11.16761 -10.58190 -10.44424 -10.26283 -10.24794 -10.11941 -9.90016 -9.61916 -9.20207 -8.92646 -8.77928 -8.75240 -8.55972 -6.21734 -4.21100 0.28541 0.68211 1.28632 1.41966 2.08347 2.98336 3.18859 3.19944 3.26349 3.34234 3.44059 3.98436 4.25889 4.28832 4.30118 4.35626 4.47917 4.86912 5.02236 5.08782 5.19246 5.31514 5.50280 5.57813 5.61489 5.69364 5.87878 5.93494 6.09240 6.23620 6.28333 6.33400 6.44245 6.48252 6.57869 6.59059 6.81180 7.08330 7.19184 7.24423 7.30395 7.54261 7.60863 7.98833 8.35408 8.81532 9.40942 10.90960 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.026482 B = 0.002145 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.056112 B =13053.470373 C =13792.867486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.096 4.096 3 C -0.070 4.070 4 C 0.105 3.895 5 N -0.643 5.643 6 C 0.511 3.489 7 O -0.499 6.499 8 C 0.501 3.499 9 O -0.523 6.523 10 N -0.682 5.682 11 C 0.137 3.863 12 C 0.028 3.972 13 C -0.149 4.149 14 C -0.149 4.149 15 C -0.514 4.514 16 H 0.078 0.922 17 C 0.076 3.924 18 N -0.890 5.890 19 Si 0.882 3.118 20 H -0.285 1.285 21 H -0.304 1.304 22 H -0.246 1.246 23 C 0.096 3.904 24 N -0.454 5.454 25 C 0.152 3.848 26 Cl -0.029 7.029 27 H 0.082 0.918 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.162 0.838 31 H 0.429 0.571 32 H 0.410 0.590 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.024 0.976 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.055 0.945 39 H 0.043 0.957 40 H 0.031 0.969 41 H 0.266 0.734 42 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.893 -23.480 7.472 26.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.099 4.099 3 C -0.098 4.098 4 C 0.007 3.993 5 N -0.291 5.291 6 C 0.294 3.706 7 O -0.372 6.372 8 C 0.280 3.720 9 O -0.400 6.400 10 N -0.333 5.333 11 C 0.016 3.984 12 C 0.027 3.973 13 C -0.206 4.206 14 C -0.206 4.206 15 C -0.552 4.552 16 H 0.096 0.904 17 C -0.127 4.127 18 N -0.526 5.526 19 Si 0.715 3.285 20 H -0.213 1.213 21 H -0.233 1.233 22 H -0.172 1.172 23 C -0.065 4.065 24 N -0.163 5.163 25 C -0.012 4.012 26 Cl -0.001 7.001 27 H 0.101 0.899 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.179 0.821 31 H 0.268 0.732 32 H 0.247 0.753 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.043 0.957 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.074 0.926 39 H 0.061 0.939 40 H 0.050 0.950 41 H 0.076 0.924 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -8.462 -24.125 7.347 26.601 hybrid contribution -1.328 0.921 -0.276 1.639 sum -9.790 -23.205 7.071 26.159 Atomic orbital electron populations 1.20866 0.88850 1.03986 1.03651 1.20518 0.98377 0.90972 1.00078 1.21701 0.92234 0.99289 0.96537 1.18851 0.91824 0.87025 1.01554 1.43086 1.25630 1.09448 1.50943 1.20783 0.86942 0.84662 0.78216 1.90763 1.20339 1.82023 1.44031 1.19578 0.86677 0.84151 0.81582 1.90786 1.20598 1.82513 1.46108 1.46213 1.22366 1.13513 1.51255 1.21800 0.93427 0.81780 1.01387 1.18753 0.93149 0.94153 0.91264 1.22399 0.99469 0.99582 0.99180 1.22350 0.98151 0.99045 1.01081 1.20657 1.02933 0.95006 1.36620 0.90398 1.24969 0.97523 0.95690 0.94517 1.69922 1.34696 1.08202 1.39788 0.87360 0.86210 0.77743 0.77224 1.21277 1.23265 1.17158 1.22529 1.00399 0.84872 0.98703 1.66988 1.06571 1.30781 1.11996 1.21504 0.89707 0.87322 1.02689 1.98393 1.73283 1.31896 1.96496 0.89902 0.90325 0.90445 0.82053 0.73209 0.75273 0.90979 0.90909 0.95743 0.92014 0.93252 0.92592 0.93883 0.95046 0.92445 0.81151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.77 9.63 36.00 0.35 -0.42 16 2 C -0.10 -0.87 5.90 -104.47 -0.62 -1.49 16 3 C -0.07 -0.69 8.49 -39.08 -0.33 -1.02 16 4 C 0.10 1.00 6.32 -83.58 -0.53 0.47 16 5 N -0.64 -6.08 5.33 -10.19 -0.05 -6.13 16 6 C 0.51 6.20 7.74 -11.63 -0.09 6.11 16 7 O -0.50 -6.72 13.94 5.47 0.08 -6.64 16 8 C 0.50 7.16 7.89 -11.63 -0.09 7.06 16 9 O -0.52 -8.41 16.48 5.49 0.09 -8.32 16 10 N -0.68 -10.37 5.00 -60.76 -0.30 -10.68 16 11 C 0.14 2.49 4.49 -4.05 -0.02 2.47 16 12 C 0.03 0.58 0.50 -155.66 -0.08 0.50 16 13 C -0.15 -2.91 7.52 37.16 0.28 -2.63 16 14 C -0.15 -2.89 7.58 37.16 0.28 -2.61 16 15 C -0.51 -13.15 8.62 -34.44 -0.30 -13.45 16 16 H 0.08 2.18 7.99 -52.49 -0.42 1.76 16 17 C 0.08 2.04 5.35 -17.82 -0.10 1.95 16 18 N -0.89 -25.85 13.96 55.43 0.77 -25.07 16 19 Si 0.88 20.41 22.75 -169.99 -3.87 16.55 16 20 H -0.29 -6.58 7.07 56.52 0.40 -6.18 16 21 H -0.30 -7.25 7.11 56.52 0.40 -6.85 16 22 H -0.25 -5.17 4.61 56.52 0.26 -4.90 16 23 C 0.10 0.85 11.12 -17.32 -0.19 0.65 16 24 N -0.45 -4.80 10.33 -10.19 -0.11 -4.90 16 25 C 0.15 1.53 7.27 -17.43 -0.13 1.40 16 26 Cl -0.03 -0.26 27.45 -51.86 -1.42 -1.68 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.08 0.46 6.91 -51.93 -0.36 0.10 16 29 H 0.08 0.44 8.09 -51.92 -0.42 0.02 16 30 H 0.16 1.64 6.31 -52.49 -0.33 1.30 16 31 H 0.43 3.26 8.30 -40.82 -0.34 2.92 16 32 H 0.41 5.92 5.72 -40.82 -0.23 5.68 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 35 H 0.02 0.40 7.12 -51.93 -0.37 0.03 16 36 H 0.06 1.29 4.08 -51.93 -0.21 1.08 16 37 H 0.05 0.94 8.12 -51.93 -0.42 0.52 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.04 0.89 2.36 -51.93 -0.12 0.77 16 40 H 0.03 0.51 6.86 -51.93 -0.36 0.15 16 41 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.17 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 353.25 15.07 5.32 5.32 Total: -1.00 -29.96 353.25 -6.02 -35.99 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -4.98 Total: 6.57 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: -1.56 Total: -0.99 kcal Atomic # 7 Polarization: -47.10 SS G_CDS: 0.31 Total: -46.79 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.17 Total: -14.96 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -3.87 Total: 16.55 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.42 Total: -1.68 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -29.96 -6.02 -35.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839580995.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.286 kcal (2) G-P(sol) polarization free energy of solvation -29.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds