Wall clock time and date at job start Tue Mar 31 2020 22:43:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38493 * 120.38381 * 2 1 4 4 C 1.39324 * 118.36784 * 179.97438 * 3 2 1 5 5 N 1.39792 * 120.47319 * 179.97438 * 4 3 2 6 6 C 1.34775 * 120.00320 * 325.15765 * 5 4 3 7 7 O 1.21382 * 119.99834 * 4.75085 * 6 5 4 8 8 C 1.49355 * 120.00068 * 184.74926 * 6 5 4 9 9 O 1.21362 * 119.99664 * 0.02562 * 8 6 5 10 10 N 1.34775 * 120.00068 * 179.97438 * 8 6 5 11 11 C 1.46490 * 120.00142 * 180.02562 * 10 8 6 12 12 C 1.53003 * 109.47577 * 179.97438 * 11 10 8 13 13 C 1.53001 * 109.47233 * 300.00265 * 12 11 10 14 14 C 1.53004 * 109.46553 * 59.99935 * 12 11 10 15 15 C 1.50699 * 109.47462 * 179.97438 * 12 11 10 16 16 H 1.07997 * 119.99601 * 1.39648 * 15 12 11 17 17 C 1.37878 * 120.00074 * 181.39774 * 15 12 11 18 18 N 1.31510 * 120.00051 * 192.03421 * 17 15 12 19 19 Si 1.86807 * 119.99812 * 12.03647 * 17 15 12 20 20 H 1.48501 * 109.46983 * 84.65305 * 19 17 15 21 21 H 1.48499 * 109.46865 * 204.65586 * 19 17 15 22 22 H 1.48500 * 109.47241 * 324.65654 * 19 17 15 23 23 C 1.38897 * 119.04516 * 359.97438 * 4 3 2 24 24 N 1.31810 * 120.67229 * 0.02562 * 23 4 3 25 25 C 1.31976 * 121.78187 * 0.02562 * 24 23 4 26 26 Cl 1.73605 * 119.54823 * 179.97438 * 25 24 23 27 27 H 1.09005 * 109.47327 * 89.99877 * 1 2 3 28 28 H 1.08998 * 109.47201 * 210.00285 * 1 2 3 29 29 H 1.09008 * 109.47040 * 329.99969 * 1 2 3 30 30 H 1.08001 * 120.81053 * 359.95641 * 3 2 1 31 31 H 0.97006 * 119.99569 * 145.15444 * 5 4 3 32 32 H 0.97001 * 119.99509 * 359.97438 * 10 8 6 33 33 H 1.09004 * 109.47448 * 299.99791 * 11 10 8 34 34 H 1.09005 * 109.47172 * 59.99749 * 11 10 8 35 35 H 1.09005 * 109.46855 * 68.95725 * 13 12 11 36 36 H 1.09000 * 109.47074 * 188.96086 * 13 12 11 37 37 H 1.09002 * 109.46818 * 308.96174 * 13 12 11 38 38 H 1.09002 * 109.47044 * 60.00141 * 14 12 11 39 39 H 1.08999 * 109.46902 * 180.02562 * 14 12 11 40 40 H 1.08996 * 109.47336 * 300.00298 * 14 12 11 41 41 H 0.97001 * 119.99946 * 179.97438 * 18 17 15 42 42 H 1.07997 * 119.65945 * 179.72004 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2074 1.1947 0.0000 4 6 3.5998 1.1457 0.0005 5 7 4.3507 2.3248 0.0000 6 6 3.9049 3.4074 -0.6677 7 8 2.8124 3.3871 -1.1962 8 6 4.7553 4.6320 -0.7573 9 8 5.8478 4.6520 -0.2293 10 7 4.3098 5.7143 -1.4255 11 6 5.1440 6.9152 -1.5139 12 6 4.4098 7.9881 -2.3207 13 6 4.1237 7.4611 -3.7283 14 6 3.0903 8.3336 -1.6275 15 6 5.2678 9.2237 -2.4111 16 1 6.2488 9.2341 -1.9595 17 6 4.8004 10.3409 -3.0703 18 7 5.6219 11.3269 -3.3570 19 14 3.0001 10.4537 -3.5560 20 1 2.2090 10.9659 -2.4084 21 1 2.8556 11.3784 -4.7090 22 1 2.5047 9.1066 -3.9368 23 6 4.2310 -0.0916 0.0016 24 7 3.5267 -1.2057 0.0016 25 6 2.2070 -1.1938 0.0001 26 17 1.3373 -2.6963 -0.0005 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3633 -0.8899 0.5139 29 1 -0.3633 0.8900 0.5139 30 1 1.6870 2.1411 -0.0007 31 1 5.1926 2.3639 0.4803 32 1 3.4370 5.6978 -1.8484 33 1 5.3481 7.2905 -0.5110 34 1 6.0839 6.6692 -2.0080 35 1 3.3781 6.6678 -3.6746 36 1 3.7466 8.2728 -4.3504 37 1 5.0427 7.0673 -4.1625 38 1 3.2941 8.7090 -0.6247 39 1 2.5670 9.0976 -2.2025 40 1 2.4696 7.4401 -1.5617 41 1 5.2932 12.1127 -3.8211 42 1 5.3098 -0.1411 -0.0025 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839580995.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:56 Heat of formation + Delta-G solvation = -45.569694 kcal Electronic energy + Delta-G solvation = -26425.327061 eV Core-core repulsion = 22431.317295 eV Total energy + Delta-G solvation = -3994.009766 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.42719 -41.25280 -39.87996 -38.48236 -37.77713 -36.53857 -35.02435 -34.85055 -33.44826 -31.54792 -28.47075 -28.38234 -28.01562 -27.08622 -25.89450 -24.52534 -22.99007 -21.61056 -21.08702 -20.02169 -18.51425 -18.40117 -18.11957 -17.93423 -17.56215 -17.11307 -16.82167 -16.37189 -15.90899 -15.60867 -15.31034 -14.99548 -14.86282 -14.60335 -14.48147 -14.40315 -14.02798 -13.87666 -13.80986 -13.79937 -13.27992 -13.00910 -12.93608 -12.84203 -12.38774 -12.22068 -12.15663 -11.94012 -11.92822 -11.76224 -11.17006 -11.03235 -10.73402 -10.63938 -10.46801 -10.39307 -10.22950 -9.48952 -8.28966 -6.31321 -0.48410 -0.02204 0.30191 0.71016 1.10778 1.37421 1.39087 1.51043 1.96407 2.35167 2.42924 2.45846 3.07405 3.22547 3.37835 3.59945 3.65167 3.72943 4.01609 4.27543 4.30115 4.37193 4.38883 4.62921 4.70349 4.72318 4.80059 4.81285 4.83487 4.91336 5.02547 5.05212 5.05710 5.13289 5.28632 5.38627 5.48248 5.66476 5.72503 5.77071 6.20846 6.30360 6.48424 6.54847 6.73098 6.84262 7.34153 8.87459 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.026482 B = 0.002145 C = 0.002030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1057.056112 B =13053.470373 C =13792.867486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.096 4.096 3 C -0.077 4.077 4 C 0.096 3.904 5 N -0.626 5.626 6 C 0.521 3.479 7 O -0.510 6.510 8 C 0.507 3.493 9 O -0.542 6.542 10 N -0.678 5.678 11 C 0.152 3.848 12 C 0.025 3.975 13 C -0.148 4.148 14 C -0.149 4.149 15 C -0.511 4.511 16 H 0.036 0.964 17 C 0.017 3.983 18 N -0.945 5.945 19 Si 0.937 3.063 20 H -0.282 1.282 21 H -0.318 1.318 22 H -0.204 1.204 23 C 0.101 3.899 24 N -0.474 5.474 25 C 0.140 3.860 26 Cl -0.023 7.023 27 H 0.089 0.911 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.160 0.840 31 H 0.438 0.562 32 H 0.417 0.583 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.060 0.940 36 H 0.048 0.952 37 H 0.046 0.954 38 H 0.052 0.948 39 H 0.033 0.967 40 H 0.069 0.931 41 H 0.264 0.736 42 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.114 -25.919 7.705 29.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.100 4.100 3 C -0.104 4.104 4 C -0.001 4.001 5 N -0.275 5.275 6 C 0.303 3.697 7 O -0.384 6.384 8 C 0.286 3.714 9 O -0.420 6.420 10 N -0.331 5.331 11 C 0.029 3.971 12 C 0.024 3.976 13 C -0.205 4.205 14 C -0.206 4.206 15 C -0.549 4.549 16 H 0.054 0.946 17 C -0.180 4.180 18 N -0.584 5.584 19 Si 0.767 3.233 20 H -0.210 1.210 21 H -0.247 1.247 22 H -0.128 1.128 23 C -0.060 4.060 24 N -0.184 5.184 25 C -0.024 4.024 26 Cl 0.005 6.995 27 H 0.107 0.893 28 H 0.103 0.897 29 H 0.106 0.894 30 H 0.177 0.823 31 H 0.279 0.721 32 H 0.256 0.744 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.067 0.933 37 H 0.065 0.935 38 H 0.071 0.929 39 H 0.052 0.948 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -10.695 -26.634 7.607 29.692 hybrid contribution -0.518 1.576 -0.264 1.680 sum -11.213 -25.058 7.343 28.418 Atomic orbital electron populations 1.20939 0.87252 1.04854 1.04286 1.20721 0.99556 0.90369 0.99307 1.21782 0.92505 0.99464 0.96697 1.18912 0.91854 0.86990 1.02296 1.42899 1.25800 1.08755 1.50016 1.20182 0.86382 0.84399 0.78707 1.90770 1.20587 1.82145 1.44919 1.19873 0.86504 0.84459 0.80522 1.90785 1.21611 1.82937 1.46631 1.45949 1.22291 1.12929 1.51944 1.21339 0.93039 0.82445 1.00227 1.18695 0.93352 0.92616 0.92933 1.22324 1.00502 1.00114 0.97584 1.22288 0.97406 1.00435 1.00453 1.20971 1.01985 0.97150 1.34841 0.94580 1.25811 1.01920 0.95362 0.94945 1.70083 1.37012 1.09263 1.42043 0.86472 0.80973 0.79413 0.76421 1.20959 1.24735 1.12760 1.22910 1.01524 0.84141 0.97397 1.67034 1.07037 1.31508 1.12797 1.21740 0.89868 0.87960 1.02833 1.98392 1.73107 1.31530 1.96452 0.89264 0.89691 0.89384 0.82263 0.72098 0.74409 0.91949 0.92248 0.92100 0.93328 0.93528 0.92873 0.94846 0.91220 0.92734 0.78600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.28 9.63 71.23 0.69 -0.60 16 2 C -0.10 -1.55 5.90 -19.77 -0.12 -1.67 16 3 C -0.08 -1.34 8.49 22.59 0.19 -1.15 16 4 C 0.10 1.61 6.32 38.29 0.24 1.85 16 5 N -0.63 -10.30 5.33 -304.50 -1.62 -11.93 16 6 C 0.52 11.30 7.74 87.24 0.68 11.98 16 7 O -0.51 -12.26 13.94 -3.35 -0.05 -12.30 16 8 C 0.51 13.37 7.89 87.24 0.69 14.05 16 9 O -0.54 -16.61 16.48 -3.28 -0.05 -16.66 16 10 N -0.68 -18.98 5.00 -464.51 -2.32 -21.30 16 11 C 0.15 5.37 4.49 86.38 0.39 5.76 16 12 C 0.03 1.00 0.50 -52.93 -0.03 0.97 16 13 C -0.15 -5.38 7.52 71.98 0.54 -4.84 16 14 C -0.15 -5.31 7.58 71.98 0.55 -4.77 16 15 C -0.51 -26.68 8.62 25.60 0.22 -26.45 16 16 H 0.04 2.12 7.99 -2.91 -0.02 2.10 16 17 C 0.02 0.94 5.35 84.66 0.45 1.40 16 18 N -0.94 -57.04 13.96 21.45 0.30 -56.74 16 19 Si 0.94 41.59 22.75 68.60 1.56 43.15 16 20 H -0.28 -12.29 7.07 99.48 0.70 -11.59 16 21 H -0.32 -14.72 7.11 99.48 0.71 -14.01 16 22 H -0.20 -7.67 4.61 99.48 0.46 -7.22 16 23 C 0.10 1.55 11.12 84.85 0.94 2.50 16 24 N -0.47 -9.15 10.33 -186.15 -1.92 -11.07 16 25 C 0.14 2.56 7.27 84.71 0.62 3.18 16 26 Cl -0.02 -0.37 27.45 -2.72 -0.07 -0.45 16 27 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 28 H 0.08 0.82 6.91 -2.39 -0.02 0.81 16 29 H 0.09 0.78 8.09 -2.38 -0.02 0.77 16 30 H 0.16 2.87 6.31 -2.91 -0.02 2.85 16 31 H 0.44 5.59 8.30 -92.70 -0.77 4.82 16 32 H 0.42 10.48 5.72 -92.71 -0.53 9.95 16 33 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 34 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 35 H 0.06 1.77 7.12 -2.38 -0.02 1.75 16 36 H 0.05 1.89 4.08 -2.39 -0.01 1.88 16 37 H 0.05 1.70 8.12 -2.39 -0.02 1.68 16 38 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.03 1.26 2.36 -2.39 -0.01 1.26 16 40 H 0.07 1.95 6.86 -2.39 -0.02 1.94 16 41 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 42 H 0.20 1.81 8.06 -2.91 -0.02 1.78 16 Total: -1.00 -66.13 353.25 1.42 -64.71 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: -0.45 Total: 20.37 kcal Atomic # 6 Polarization: -3.83 SS G_CDS: 6.05 Total: 2.22 kcal Atomic # 7 Polarization: -95.46 SS G_CDS: -5.57 Total: -101.03 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.10 Total: -28.97 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 1.56 Total: 43.15 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -0.07 Total: -0.45 kcal Total: -66.13 1.42 -64.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839580995.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.142 kcal (2) G-P(sol) polarization free energy of solvation -66.128 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds