Wall clock time and date at job start Tue Mar 31 2020 22:43:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38229 * 120.36664 * 2 1 4 4 N 1.31894 * 120.94636 * 180.02562 * 3 2 1 5 5 C 1.31884 * 121.78562 * 0.02562 * 4 3 2 6 6 Cl 1.73597 * 119.68766 * 179.97438 * 5 4 3 7 7 C 1.39067 * 120.62441 * 359.97438 * 5 4 3 8 8 N 1.39791 * 120.49682 * 180.02562 * 7 5 4 9 9 C 1.34770 * 119.99808 * 204.34143 * 8 7 5 10 10 O 1.21376 * 120.00171 * 5.58238 * 9 8 7 11 11 C 1.49352 * 120.00071 * 185.58295 * 9 8 7 12 12 O 1.21366 * 119.99738 * 359.97438 * 11 9 8 13 13 N 1.34779 * 120.00267 * 180.02562 * 11 9 8 14 14 C 1.46503 * 119.99897 * 179.97438 * 13 11 9 15 15 C 1.53001 * 109.46670 * 180.02562 * 14 13 11 16 16 C 1.52992 * 109.47292 * 299.99715 * 15 14 13 17 17 C 1.53004 * 109.47155 * 59.99955 * 15 14 13 18 18 C 1.50701 * 109.46741 * 180.02562 * 15 14 13 19 19 H 1.08003 * 119.99954 * 359.97438 * 18 15 14 20 20 C 1.37878 * 119.99695 * 179.97438 * 18 15 14 21 21 N 1.31515 * 120.00297 * 0.02562 * 20 18 15 22 22 Si 1.86804 * 119.99763 * 179.97438 * 20 18 15 23 23 H 1.48502 * 109.47105 * 89.99905 * 22 20 18 24 24 H 1.48499 * 109.46920 * 210.00010 * 22 20 18 25 25 H 1.48503 * 109.47294 * 329.99927 * 22 20 18 26 26 C 1.38539 * 120.36400 * 179.73170 * 2 1 3 27 27 H 1.09000 * 109.47356 * 90.00026 * 1 2 3 28 28 H 1.08998 * 109.46857 * 209.99531 * 1 2 3 29 29 H 1.08994 * 109.47295 * 329.99547 * 1 2 3 30 30 H 1.08006 * 119.52761 * 0.02935 * 3 2 1 31 31 H 0.96998 * 120.00007 * 24.34258 * 8 7 5 32 32 H 0.97002 * 119.99717 * 0.02562 * 13 11 9 33 33 H 1.09000 * 109.46582 * 299.99624 * 14 13 11 34 34 H 1.08995 * 109.46959 * 59.99940 * 14 13 11 35 35 H 1.09005 * 109.47088 * 60.00467 * 16 15 14 36 36 H 1.08997 * 109.47378 * 180.02562 * 16 15 14 37 37 H 1.09003 * 109.47527 * 300.00646 * 16 15 14 38 38 H 1.08998 * 109.47002 * 60.00057 * 17 15 14 39 39 H 1.09005 * 109.46919 * 179.97438 * 17 15 14 40 40 H 1.08992 * 109.47266 * 299.99758 * 17 15 14 41 41 H 0.96993 * 119.99726 * 179.97438 * 21 20 18 42 42 H 1.08007 * 120.81831 * 359.96561 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2058 1.1927 0.0000 4 7 3.5247 1.2060 -0.0005 5 6 4.2307 0.0920 -0.0015 6 17 5.9647 0.1731 -0.0028 7 6 3.5991 -1.1469 -0.0016 8 7 4.3500 -2.3260 -0.0021 9 6 3.8149 -3.4655 -0.4833 10 8 2.7207 -3.4478 -1.0083 11 6 4.5682 -4.7502 -0.3705 12 8 5.6625 -4.7678 0.1540 13 7 4.0333 -5.8896 -0.8521 14 6 4.7726 -7.1497 -0.7419 15 6 3.9488 -8.2801 -1.3620 16 6 2.6156 -8.4047 -0.6220 17 6 3.6864 -7.9700 -2.8371 18 6 4.7090 -9.5763 -1.2481 19 1 5.6825 -9.5921 -0.7807 20 6 4.1617 -10.7420 -1.7408 21 7 2.9765 -10.7226 -2.3105 22 14 5.1043 -12.3486 -1.6002 23 1 4.7545 -13.0175 -0.3214 24 1 4.7448 -13.2344 -2.7367 25 1 6.5628 -12.0712 -1.6310 26 6 2.2073 -1.1953 0.0056 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6640 2.1270 0.0005 31 1 5.2562 -2.3240 0.3438 32 1 3.1592 -5.8753 -1.2723 33 1 5.7222 -7.0610 -1.2696 34 1 4.9599 -7.3703 0.3089 35 1 2.0655 -7.4672 -0.7040 36 1 2.0289 -9.2103 -1.0635 37 1 2.8025 -8.6255 0.4289 38 1 4.6362 -7.8812 -3.3643 39 1 3.0999 -8.7756 -3.2790 40 1 3.1364 -7.0325 -2.9191 41 1 2.5917 -11.5426 -2.6573 42 1 1.6867 -2.1416 0.0106 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000839581623.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:59 Heat of formation + Delta-G solvation = -43.796173 kcal Electronic energy + Delta-G solvation = -26556.866103 eV Core-core repulsion = 22562.933243 eV Total energy + Delta-G solvation = -3993.932860 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.51433 -40.19891 -38.63354 -37.08549 -36.63908 -35.67150 -33.91833 -33.44688 -31.01531 -30.85964 -27.65625 -26.65546 -25.80098 -25.44824 -24.74966 -23.45616 -22.08480 -20.48058 -19.27718 -18.72984 -17.72205 -17.46724 -17.09083 -16.33475 -15.94229 -15.73308 -15.16194 -14.93190 -14.72106 -14.41381 -14.26200 -13.86095 -13.60779 -13.47231 -13.15866 -13.00651 -12.87615 -12.41406 -12.30812 -11.89453 -11.70855 -11.62803 -11.53015 -11.47787 -11.25991 -10.93939 -10.75664 -10.47643 -10.29118 -10.20896 -9.78444 -9.73470 -9.57701 -9.34933 -8.87848 -8.76838 -8.64858 -8.43589 -6.08502 -4.19500 0.35374 0.71629 1.41665 1.45305 2.11826 3.07696 3.24430 3.30614 3.31908 3.34895 3.52695 4.09774 4.22215 4.33246 4.45058 4.57679 4.61237 4.63433 5.16975 5.18474 5.22104 5.37938 5.50103 5.71317 5.81590 5.99935 6.13642 6.17264 6.37015 6.47022 6.61666 6.75329 6.76251 6.84245 6.92125 7.23367 7.27799 7.33712 7.47407 7.61441 7.70100 7.93030 8.02458 8.14808 8.31339 8.80703 9.46878 10.92967 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021474 B = 0.002358 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.579527 B =11871.724794 C =12892.062719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.108 4.108 3 C 0.094 3.906 4 N -0.451 5.451 5 C 0.136 3.864 6 Cl -0.024 7.024 7 C 0.128 3.872 8 N -0.641 5.641 9 C 0.512 3.488 10 O -0.494 6.494 11 C 0.499 3.501 12 O -0.526 6.526 13 N -0.675 5.675 14 C 0.127 3.873 15 C 0.056 3.944 16 C -0.134 4.134 17 C -0.134 4.134 18 C -0.509 4.509 19 H 0.059 0.941 20 C 0.067 3.933 21 N -0.884 5.884 22 Si 0.895 3.105 23 H -0.281 1.281 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.081 4.081 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.168 0.832 31 H 0.428 0.572 32 H 0.412 0.588 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.008 0.992 36 H 0.088 0.912 37 H 0.028 0.972 38 H 0.028 0.972 39 H 0.088 0.912 40 H 0.008 0.992 41 H 0.261 0.739 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.986 21.389 4.476 22.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.110 4.110 3 C -0.065 4.065 4 N -0.160 5.160 5 C -0.031 4.031 6 Cl 0.004 6.996 7 C 0.029 3.971 8 N -0.288 5.288 9 C 0.295 3.705 10 O -0.367 6.367 11 C 0.277 3.723 12 O -0.404 6.404 13 N -0.326 5.326 14 C 0.005 3.995 15 C 0.056 3.944 16 C -0.192 4.192 17 C -0.192 4.192 18 C -0.547 4.547 19 H 0.077 0.923 20 C -0.134 4.134 21 N -0.522 5.522 22 Si 0.723 3.277 23 H -0.207 1.207 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.109 4.109 27 H 0.099 0.901 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.185 0.815 31 H 0.268 0.732 32 H 0.249 0.751 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.027 0.973 36 H 0.106 0.894 37 H 0.047 0.953 38 H 0.047 0.953 39 H 0.106 0.894 40 H 0.027 0.973 41 H 0.071 0.929 42 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -3.479 21.918 4.375 22.620 hybrid contribution 0.372 -1.566 0.009 1.609 sum -3.107 20.353 4.384 21.050 Atomic orbital electron populations 1.20764 0.89082 1.03647 1.03322 1.20982 0.98350 0.93003 0.98712 1.22563 0.87912 0.98172 0.97841 1.66985 1.08703 1.28620 1.11727 1.21335 0.87947 0.88475 1.05380 1.98419 1.06194 1.98349 1.96622 1.18325 0.91850 0.85232 1.01703 1.43231 1.18942 1.06262 1.60366 1.20830 0.86492 0.85341 0.77839 1.90729 1.20111 1.86019 1.39891 1.19572 0.86456 0.84630 0.81617 1.90773 1.19878 1.86080 1.43660 1.46236 1.22816 1.07494 1.56078 1.22027 0.95450 0.80680 1.01307 1.18385 0.92625 0.91300 0.92115 1.21867 0.98831 0.99565 0.98915 1.21867 0.99741 0.98990 0.98610 1.20937 1.03518 0.91365 1.38889 0.92297 1.24879 0.94925 0.98914 0.94725 1.69798 1.15858 1.27597 1.38991 0.86550 0.80283 0.83273 0.77640 1.20674 1.21226 1.19877 1.21828 0.90998 1.00692 0.97348 0.90140 0.90699 0.90679 0.81537 0.73200 0.75066 0.91714 0.91712 0.97342 0.89359 0.95282 0.95264 0.89363 0.97318 0.92882 0.81526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.61 10.04 36.01 0.36 -0.25 16 2 C -0.11 -0.92 5.89 -104.51 -0.62 -1.53 16 3 C 0.09 0.80 10.85 -17.53 -0.19 0.61 16 4 N -0.45 -5.03 10.33 -10.19 -0.11 -5.14 16 5 C 0.14 1.58 7.30 -17.22 -0.13 1.45 16 6 Cl -0.02 -0.26 27.95 -51.86 -1.45 -1.71 16 7 C 0.13 1.51 6.45 -83.54 -0.54 0.97 16 8 N -0.64 -7.85 5.18 -10.17 -0.05 -7.90 16 9 C 0.51 7.22 7.71 -11.63 -0.09 7.13 16 10 O -0.49 -7.37 13.68 5.47 0.07 -7.30 16 11 C 0.50 8.09 7.89 -11.63 -0.09 8.00 16 12 O -0.53 -9.46 16.48 5.48 0.09 -9.37 16 13 N -0.67 -11.58 4.95 -60.76 -0.30 -11.88 16 14 C 0.13 2.51 4.50 -4.04 -0.02 2.49 16 15 C 0.06 1.26 0.50 -155.66 -0.08 1.18 16 16 C -0.13 -2.93 8.08 37.15 0.30 -2.63 16 17 C -0.13 -2.95 8.08 37.16 0.30 -2.65 16 18 C -0.51 -12.80 8.01 -34.44 -0.28 -13.08 16 19 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 20 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 21 N -0.88 -23.01 9.35 55.43 0.52 -22.49 16 22 Si 0.89 20.18 29.54 -169.99 -5.02 15.16 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 26 C -0.08 -0.87 8.50 -39.09 -0.33 -1.21 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.41 8.09 -51.93 -0.42 -0.01 16 29 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 30 H 0.17 0.88 8.06 -52.48 -0.42 0.46 16 31 H 0.43 4.91 7.24 -40.82 -0.30 4.61 16 32 H 0.41 6.85 5.63 -40.82 -0.23 6.62 16 33 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 35 H 0.01 0.15 6.86 -51.93 -0.36 -0.21 16 36 H 0.09 2.15 6.07 -51.93 -0.32 1.83 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 2.15 6.07 -51.93 -0.32 1.84 16 40 H 0.01 0.16 6.86 -51.93 -0.36 -0.20 16 41 H 0.26 6.58 8.31 -40.82 -0.34 6.24 16 42 H 0.17 1.89 5.89 -52.48 -0.31 1.58 16 LS Contribution 363.37 15.07 5.48 5.48 Total: -1.00 -27.61 363.37 -7.35 -34.96 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -5.10 Total: 8.07 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -1.49 Total: 2.12 kcal Atomic # 7 Polarization: -47.47 SS G_CDS: 0.06 Total: -47.41 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: 0.17 Total: -16.67 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 17 Polarization: -0.26 SS G_CDS: -1.45 Total: -1.71 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.61 -7.35 -34.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839581623.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.838 kcal (2) G-P(sol) polarization free energy of solvation -27.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds