Wall clock time and date at job start Tue Mar 31 2020 22:43:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38229 * 120.36664 * 2 1 4 4 N 1.31894 * 120.94636 * 180.02562 * 3 2 1 5 5 C 1.31884 * 121.78562 * 0.02562 * 4 3 2 6 6 Cl 1.73597 * 119.68766 * 179.97438 * 5 4 3 7 7 C 1.39067 * 120.62441 * 359.97438 * 5 4 3 8 8 N 1.39791 * 120.49682 * 180.02562 * 7 5 4 9 9 C 1.34770 * 119.99808 * 204.34143 * 8 7 5 10 10 O 1.21376 * 120.00171 * 5.58238 * 9 8 7 11 11 C 1.49352 * 120.00071 * 185.58295 * 9 8 7 12 12 O 1.21366 * 119.99738 * 359.97438 * 11 9 8 13 13 N 1.34779 * 120.00267 * 180.02562 * 11 9 8 14 14 C 1.46503 * 119.99897 * 179.97438 * 13 11 9 15 15 C 1.53001 * 109.46670 * 180.02562 * 14 13 11 16 16 C 1.52992 * 109.47292 * 299.99715 * 15 14 13 17 17 C 1.53004 * 109.47155 * 59.99955 * 15 14 13 18 18 C 1.50701 * 109.46741 * 180.02562 * 15 14 13 19 19 H 1.08003 * 119.99954 * 359.97438 * 18 15 14 20 20 C 1.37878 * 119.99695 * 179.97438 * 18 15 14 21 21 N 1.31515 * 120.00297 * 0.02562 * 20 18 15 22 22 Si 1.86804 * 119.99763 * 179.97438 * 20 18 15 23 23 H 1.48502 * 109.47105 * 89.99905 * 22 20 18 24 24 H 1.48499 * 109.46920 * 210.00010 * 22 20 18 25 25 H 1.48503 * 109.47294 * 329.99927 * 22 20 18 26 26 C 1.38539 * 120.36400 * 179.73170 * 2 1 3 27 27 H 1.09000 * 109.47356 * 90.00026 * 1 2 3 28 28 H 1.08998 * 109.46857 * 209.99531 * 1 2 3 29 29 H 1.08994 * 109.47295 * 329.99547 * 1 2 3 30 30 H 1.08006 * 119.52761 * 0.02935 * 3 2 1 31 31 H 0.96998 * 120.00007 * 24.34258 * 8 7 5 32 32 H 0.97002 * 119.99717 * 0.02562 * 13 11 9 33 33 H 1.09000 * 109.46582 * 299.99624 * 14 13 11 34 34 H 1.08995 * 109.46959 * 59.99940 * 14 13 11 35 35 H 1.09005 * 109.47088 * 60.00467 * 16 15 14 36 36 H 1.08997 * 109.47378 * 180.02562 * 16 15 14 37 37 H 1.09003 * 109.47527 * 300.00646 * 16 15 14 38 38 H 1.08998 * 109.47002 * 60.00057 * 17 15 14 39 39 H 1.09005 * 109.46919 * 179.97438 * 17 15 14 40 40 H 1.08992 * 109.47266 * 299.99758 * 17 15 14 41 41 H 0.96993 * 119.99726 * 179.97438 * 21 20 18 42 42 H 1.08007 * 120.81831 * 359.96561 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2058 1.1927 0.0000 4 7 3.5247 1.2060 -0.0005 5 6 4.2307 0.0920 -0.0015 6 17 5.9647 0.1731 -0.0028 7 6 3.5991 -1.1469 -0.0016 8 7 4.3500 -2.3260 -0.0021 9 6 3.8149 -3.4655 -0.4833 10 8 2.7207 -3.4478 -1.0083 11 6 4.5682 -4.7502 -0.3705 12 8 5.6625 -4.7678 0.1540 13 7 4.0333 -5.8896 -0.8521 14 6 4.7726 -7.1497 -0.7419 15 6 3.9488 -8.2801 -1.3620 16 6 2.6156 -8.4047 -0.6220 17 6 3.6864 -7.9700 -2.8371 18 6 4.7090 -9.5763 -1.2481 19 1 5.6825 -9.5921 -0.7807 20 6 4.1617 -10.7420 -1.7408 21 7 2.9765 -10.7226 -2.3105 22 14 5.1043 -12.3486 -1.6002 23 1 4.7545 -13.0175 -0.3214 24 1 4.7448 -13.2344 -2.7367 25 1 6.5628 -12.0712 -1.6310 26 6 2.2073 -1.1953 0.0056 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 1.6640 2.1270 0.0005 31 1 5.2562 -2.3240 0.3438 32 1 3.1592 -5.8753 -1.2723 33 1 5.7222 -7.0610 -1.2696 34 1 4.9599 -7.3703 0.3089 35 1 2.0655 -7.4672 -0.7040 36 1 2.0289 -9.2103 -1.0635 37 1 2.8025 -8.6255 0.4289 38 1 4.6362 -7.8812 -3.3643 39 1 3.0999 -8.7756 -3.2790 40 1 3.1364 -7.0325 -2.9191 41 1 2.5917 -11.5426 -2.6573 42 1 1.6867 -2.1416 0.0106 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839581623.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:58 Heat of formation + Delta-G solvation = -60.798801 kcal Electronic energy + Delta-G solvation = -26557.603392 eV Core-core repulsion = 22562.933243 eV Total energy + Delta-G solvation = -3994.670149 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.51388 -41.23936 -39.87181 -38.26364 -37.89458 -36.72389 -35.05811 -34.59854 -32.78473 -31.75272 -28.26014 -28.07972 -27.58415 -27.26452 -25.92440 -24.49377 -22.97305 -21.66175 -20.76984 -20.13480 -18.55870 -18.48714 -18.12010 -17.78602 -17.32764 -17.01262 -16.63987 -16.28905 -15.92832 -15.46766 -15.25768 -15.10537 -14.79559 -14.51633 -14.35011 -14.05762 -14.05339 -13.74837 -13.22566 -13.14010 -12.97161 -12.81805 -12.70720 -12.65671 -12.59282 -12.47801 -12.42357 -12.27888 -12.12444 -11.51050 -11.36009 -11.13455 -10.75037 -10.66804 -10.41872 -10.36678 -10.19221 -9.49280 -8.02033 -6.18159 -0.50843 -0.09576 0.34006 0.62311 0.98906 1.44180 1.47733 1.55188 1.91208 2.33908 2.47427 2.49175 3.19566 3.22324 3.35168 3.50407 3.77012 3.88413 4.02321 4.32263 4.46410 4.48915 4.61198 4.67451 4.84937 4.87585 4.90587 5.03352 5.03750 5.12805 5.16226 5.17257 5.20926 5.45973 5.48567 5.61340 5.65069 5.68175 6.12202 6.13422 6.19087 6.40171 6.43316 6.54259 6.78171 6.88069 7.50049 8.97126 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021474 B = 0.002358 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1303.579527 B =11871.724794 C =12892.062719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.098 4.098 3 C 0.100 3.900 4 N -0.469 5.469 5 C 0.125 3.875 6 Cl -0.026 7.026 7 C 0.110 3.890 8 N -0.631 5.631 9 C 0.521 3.479 10 O -0.503 6.503 11 C 0.503 3.497 12 O -0.543 6.543 13 N -0.674 5.674 14 C 0.142 3.858 15 C 0.051 3.949 16 C -0.125 4.125 17 C -0.125 4.125 18 C -0.526 4.526 19 H 0.051 0.949 20 C 0.028 3.972 21 N -0.900 5.900 22 Si 0.946 3.054 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.274 1.274 26 C -0.093 4.093 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.204 0.796 31 H 0.430 0.570 32 H 0.416 0.584 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.032 0.968 36 H 0.063 0.937 37 H 0.024 0.976 38 H 0.023 0.977 39 H 0.063 0.937 40 H 0.032 0.968 41 H 0.260 0.740 42 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.008 23.247 4.769 24.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.101 4.101 3 C -0.058 4.058 4 N -0.178 5.178 5 C -0.041 4.041 6 Cl 0.002 6.998 7 C 0.011 3.989 8 N -0.278 5.278 9 C 0.304 3.696 10 O -0.377 6.377 11 C 0.283 3.717 12 O -0.422 6.422 13 N -0.326 5.326 14 C 0.019 3.981 15 C 0.051 3.949 16 C -0.183 4.183 17 C -0.183 4.183 18 C -0.565 4.565 19 H 0.070 0.930 20 C -0.172 4.172 21 N -0.539 5.539 22 Si 0.773 3.227 23 H -0.205 1.205 24 H -0.212 1.212 25 H -0.198 1.198 26 C -0.120 4.120 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.119 0.881 30 H 0.221 0.779 31 H 0.271 0.729 32 H 0.254 0.746 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.043 0.957 38 H 0.042 0.958 39 H 0.082 0.918 40 H 0.050 0.950 41 H 0.069 0.931 42 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -4.498 23.806 4.676 24.675 hybrid contribution 0.629 -2.019 -0.059 2.116 sum -3.868 21.787 4.617 22.604 Atomic orbital electron populations 1.20870 0.86685 1.04964 1.04184 1.21323 0.99940 0.92051 0.96789 1.23233 0.87197 0.99686 0.95721 1.67054 1.09954 1.28392 1.12433 1.21375 0.88105 0.88612 1.06021 1.98412 1.06339 1.98356 1.96662 1.18431 0.92289 0.84819 1.03332 1.43079 1.19012 1.06026 1.59687 1.20232 0.86132 0.84974 0.78294 1.90732 1.20277 1.86052 1.40635 1.19851 0.86170 0.85084 0.80603 1.90764 1.20754 1.86490 1.44194 1.46034 1.22832 1.07070 1.56672 1.21619 0.94850 0.81135 1.00475 1.18375 0.92853 0.91175 0.92547 1.21715 0.98469 0.99870 0.98201 1.21721 0.99285 0.99192 0.98111 1.21248 1.03559 0.92931 1.38724 0.93033 1.25466 0.95670 1.01326 0.94762 1.69915 1.16620 1.27960 1.39406 0.85745 0.79180 0.80356 0.77430 1.20529 1.21169 1.19843 1.21937 0.90737 1.01473 0.97880 0.89297 0.90684 0.88143 0.77922 0.72924 0.74595 0.92487 0.92327 0.94886 0.91832 0.95704 0.95793 0.91812 0.94957 0.93058 0.82207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.85 10.04 71.24 0.71 -0.14 16 2 C -0.10 -1.42 5.89 -19.79 -0.12 -1.54 16 3 C 0.10 1.42 10.85 84.68 0.92 2.34 16 4 N -0.47 -9.60 10.33 -186.16 -1.92 -11.52 16 5 C 0.13 2.78 7.30 84.88 0.62 3.40 16 6 Cl -0.03 -0.55 27.95 -2.72 -0.08 -0.62 16 7 C 0.11 2.49 6.45 38.32 0.25 2.73 16 8 N -0.63 -15.09 5.18 -304.44 -1.58 -16.67 16 9 C 0.52 14.31 7.71 87.24 0.67 14.98 16 10 O -0.50 -14.47 13.68 -3.33 -0.05 -14.51 16 11 C 0.50 16.00 7.89 87.24 0.69 16.68 16 12 O -0.54 -19.32 16.48 -3.30 -0.05 -19.37 16 13 N -0.67 -22.58 4.95 -464.50 -2.30 -24.88 16 14 C 0.14 5.57 4.50 86.38 0.39 5.96 16 15 C 0.05 2.27 0.50 -52.93 -0.03 2.24 16 16 C -0.12 -5.40 8.08 71.98 0.58 -4.82 16 17 C -0.13 -5.47 8.08 71.98 0.58 -4.89 16 18 C -0.53 -26.64 8.01 25.60 0.21 -26.43 16 19 H 0.05 2.62 7.74 -2.91 -0.02 2.60 16 20 C 0.03 1.41 5.15 84.65 0.44 1.85 16 21 N -0.90 -47.23 9.35 21.45 0.20 -47.03 16 22 Si 0.95 41.52 29.54 68.60 2.03 43.55 16 23 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 24 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 26 C -0.09 -1.87 8.50 22.59 0.19 -1.68 16 27 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 28 H 0.07 0.62 8.09 -2.39 -0.02 0.60 16 29 H 0.10 0.30 8.09 -2.39 -0.02 0.28 16 30 H 0.20 1.27 8.06 -2.91 -0.02 1.25 16 31 H 0.43 9.73 7.24 -92.71 -0.67 9.06 16 32 H 0.42 13.28 5.63 -92.71 -0.52 12.76 16 33 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 34 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 35 H 0.03 1.22 6.86 -2.38 -0.02 1.21 16 36 H 0.06 3.09 6.07 -2.39 -0.01 3.08 16 37 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.02 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 3.12 6.07 -2.38 -0.01 3.11 16 40 H 0.03 1.21 6.86 -2.39 -0.02 1.20 16 41 H 0.26 13.19 8.31 -92.71 -0.77 12.42 16 42 H 0.16 3.45 5.89 -2.91 -0.02 3.43 16 Total: -1.00 -58.71 363.37 2.25 -56.47 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: -0.10 Total: 23.90 kcal Atomic # 6 Polarization: 4.59 SS G_CDS: 6.10 Total: 10.69 kcal Atomic # 7 Polarization: -94.50 SS G_CDS: -5.60 Total: -100.10 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -0.10 Total: -33.89 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -0.08 Total: -0.62 kcal Total: -58.71 2.25 -56.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839581623.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.332 kcal (2) G-P(sol) polarization free energy of solvation -58.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds