Wall clock time and date at job start Tue Mar 31 2020 22:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86805 * 119.99772 * 2 1 4 4 H 1.48506 * 109.46958 * 239.99542 * 3 2 1 5 5 H 1.48494 * 109.47201 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47231 * 119.99651 * 3 2 1 7 7 C 1.38944 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99624 * 180.02562 * 7 2 1 9 9 N 1.37090 * 120.00495 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00742 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99698 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00347 * 179.97438 * 10 9 7 13 13 O 1.45204 * 109.47298 * 180.02562 * 12 10 9 14 14 C 1.34226 * 117.00437 * 180.02562 * 13 12 10 15 15 O 1.20838 * 119.99735 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00486 * 180.02562 * 14 13 12 17 17 H 1.08998 * 109.46507 * 300.00240 * 16 14 13 18 18 C 1.52993 * 109.47099 * 179.97438 * 16 14 13 19 19 C 1.53002 * 109.46786 * 172.82130 * 18 16 14 20 20 H 1.09002 * 110.27237 * 58.93253 * 19 18 16 21 21 C 1.54954 * 110.31192 * 181.12226 * 19 18 16 22 22 C 1.55299 * 100.94424 * 155.36530 * 21 19 18 23 23 C 1.54385 * 102.25117 * 325.86795 * 22 21 19 24 24 O 1.43241 * 107.59041 * 21.35790 * 23 22 21 25 25 C 1.52996 * 109.46802 * 59.99719 * 16 14 13 26 26 F 1.39906 * 109.46979 * 66.38708 * 25 16 14 27 27 F 1.39894 * 109.47688 * 306.38485 * 25 16 14 28 28 F 1.39902 * 109.46985 * 186.38480 * 25 16 14 29 29 H 0.97006 * 120.00032 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00002 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.46911 * 60.00582 * 12 10 9 32 32 H 1.08995 * 109.47790 * 300.00169 * 12 10 9 33 33 H 1.08998 * 109.47584 * 292.82164 * 18 16 14 34 34 H 1.09002 * 109.47267 * 52.82926 * 18 16 14 35 35 H 1.08999 * 111.12109 * 273.28709 * 21 19 18 36 36 H 1.09005 * 111.11896 * 37.43918 * 21 19 18 37 37 H 1.09000 * 110.84490 * 207.68233 * 22 21 19 38 38 H 1.08999 * 111.02690 * 84.13732 * 22 21 19 39 39 H 1.08999 * 109.82978 * 261.84321 * 23 22 21 40 40 H 1.08997 * 109.83338 * 140.87332 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6966 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0011 13 8 2.1874 -5.9665 0.0016 14 6 1.6744 -7.2069 0.0016 15 8 0.4765 -7.3652 0.0008 16 6 2.5924 -8.4021 0.0027 17 1 3.2218 -8.3774 -0.8868 18 6 1.7591 -9.6851 0.0032 19 6 2.6817 -10.8924 -0.1760 20 1 3.4182 -10.9274 0.6268 21 6 1.8541 -12.2021 -0.2067 22 6 2.8053 -13.1334 -1.0064 23 6 3.4682 -12.1520 -1.9969 24 8 3.3379 -10.8335 -1.4524 25 6 3.4741 -8.3667 1.2526 26 9 2.6786 -8.5445 2.3896 27 9 4.1264 -7.1314 1.3284 28 9 4.4235 -9.3919 1.1827 29 1 -0.4850 0.8401 -0.0004 30 1 0.3534 -2.3907 -0.0002 31 1 0.6169 -4.9208 -0.8887 32 1 0.6175 -4.9205 0.8913 33 1 1.2265 -9.7723 0.9502 34 1 1.0408 -9.6522 -0.8160 35 1 1.6855 -12.5838 0.8003 36 1 0.9106 -12.0582 -0.7333 37 1 2.2412 -13.8994 -1.5384 38 1 3.5502 -13.5865 -0.3523 39 1 2.9650 -12.2048 -2.9623 40 1 4.5229 -12.4010 -2.1142 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845319474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:53 Heat of formation + Delta-G solvation = -321.526543 kcal Electronic energy + Delta-G solvation = -30440.219338 eV Core-core repulsion = 25419.384530 eV Total energy + Delta-G solvation = -5020.834809 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.29358 -47.82192 -47.62586 -40.69648 -39.76634 -38.20718 -36.43534 -34.71662 -34.00112 -32.52659 -31.38585 -30.20926 -28.36051 -25.94625 -24.89927 -23.94006 -22.15532 -21.63154 -20.70876 -19.61448 -18.94823 -18.65630 -18.27698 -18.06778 -17.35108 -16.98397 -16.51969 -16.15909 -16.02909 -15.37320 -15.08688 -14.64213 -14.54980 -14.51185 -14.31187 -14.12184 -14.07021 -13.97490 -13.76324 -13.61154 -13.49458 -13.11614 -12.99965 -12.48635 -12.31761 -12.18939 -11.99921 -11.83196 -11.61702 -11.45261 -11.41816 -11.13077 -11.11044 -10.69282 -10.52386 -10.48173 -10.28517 -9.80556 -9.59003 -8.52487 -8.07854 -6.49423 -3.91402 1.76674 2.30480 2.64005 3.16317 3.23549 3.28045 3.33922 3.53269 3.69706 3.73501 3.86416 4.05140 4.11115 4.24350 4.45232 4.49345 4.61495 4.69867 4.80880 4.85692 5.00305 5.06192 5.14658 5.21870 5.29799 5.37522 5.41632 5.45362 5.52218 5.64558 5.65011 5.76744 6.02034 6.40789 6.64558 7.48394 7.55889 7.94090 8.48716 9.07564 9.39232 9.89302 10.67726 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025981 B = 0.002401 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.462205 B =11659.244312 C =11940.589610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.025 3.975 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.302 4.302 8 H 0.106 0.894 9 N -0.552 5.552 10 C 0.438 3.562 11 O -0.571 6.571 12 C 0.059 3.941 13 O -0.312 6.312 14 C 0.464 3.536 15 O -0.490 6.490 16 C -0.126 4.126 17 H 0.160 0.840 18 C -0.107 4.107 19 C 0.062 3.938 20 H 0.092 0.908 21 C -0.150 4.150 22 C -0.156 4.156 23 C 0.051 3.949 24 O -0.377 6.377 25 C 0.462 3.538 26 F -0.178 7.178 27 F -0.155 7.155 28 F -0.171 7.171 29 H 0.274 0.726 30 H 0.395 0.605 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.070 0.930 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.772 -25.809 -0.472 25.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.190 5.190 10 C 0.222 3.778 11 O -0.455 6.455 12 C -0.018 4.018 13 O -0.226 6.226 14 C 0.305 3.695 15 O -0.377 6.377 16 C -0.146 4.146 17 H 0.177 0.823 18 C -0.145 4.145 19 C 0.005 3.995 20 H 0.110 0.890 21 C -0.187 4.187 22 C -0.194 4.194 23 C -0.025 4.025 24 O -0.297 6.297 25 C 0.407 3.593 26 F -0.160 7.160 27 F -0.136 7.136 28 F -0.153 7.153 29 H 0.084 0.916 30 H 0.228 0.772 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.105 0.895 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.088 0.912 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 2.182 -25.445 -0.537 25.544 hybrid contribution -0.334 0.651 0.200 0.759 sum 1.848 -24.794 -0.337 24.865 Atomic orbital electron populations 1.69607 1.05994 1.28587 1.49639 1.25310 0.95693 0.99863 0.96879 0.85853 0.78745 0.80044 0.79221 1.19744 1.20884 1.19734 1.19677 0.93472 0.81720 1.48243 0.87634 1.41682 1.09347 1.04033 1.63906 1.19255 0.88370 0.83971 0.86181 1.90585 1.13277 1.86658 1.54961 1.22869 0.90760 0.84399 1.03756 1.86604 1.40198 1.13658 1.82098 1.22678 0.88056 0.84818 0.73950 1.90689 1.15835 1.86673 1.44535 1.22360 0.98223 0.94625 0.99439 0.82280 1.21780 0.97417 0.88952 1.06321 1.23408 0.94062 0.94149 0.87923 0.89034 1.23279 0.99183 0.94407 1.01852 1.23116 0.99137 0.98620 0.98500 1.23114 1.00554 0.81997 0.96854 1.88415 1.79782 1.27560 1.33908 1.19976 0.79758 0.74733 0.84823 1.93207 1.73614 1.95153 1.54012 1.93375 1.81962 1.41810 1.96469 1.93136 1.66407 1.59298 1.96432 0.91580 0.77169 0.89188 0.89247 0.88173 0.87684 0.89534 0.89866 0.89922 0.90389 0.91213 0.91275 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.08 13.05 55.50 0.72 -23.35 16 2 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.80 29.55 -169.99 -5.02 15.77 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 6 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 7 C -0.30 -8.35 9.68 -14.94 -0.14 -8.50 16 8 H 0.11 3.05 7.16 -52.48 -0.38 2.67 16 9 N -0.55 -13.97 5.29 -10.97 -0.06 -14.03 16 10 C 0.44 10.59 7.86 -10.99 -0.09 10.50 16 11 O -0.57 -16.00 16.08 -14.11 -0.23 -16.23 16 12 C 0.06 1.13 5.94 36.00 0.21 1.34 16 13 O -0.31 -5.81 8.51 -45.89 -0.39 -6.20 16 14 C 0.46 7.15 7.10 36.01 0.26 7.40 16 15 O -0.49 -7.94 15.62 -18.76 -0.29 -8.24 16 16 C -0.13 -1.51 2.35 -91.78 -0.22 -1.73 16 17 H 0.16 1.75 7.62 -51.93 -0.40 1.36 16 18 C -0.11 -1.02 3.74 -26.73 -0.10 -1.12 16 19 C 0.06 0.52 3.00 -25.70 -0.08 0.44 16 20 H 0.09 0.79 5.52 -51.93 -0.29 0.51 16 21 C -0.15 -0.92 6.57 -24.48 -0.16 -1.08 16 22 C -0.16 -0.83 7.02 -24.79 -0.17 -1.01 16 23 C 0.05 0.36 7.79 37.88 0.30 0.66 16 24 O -0.38 -3.70 10.43 -35.23 -0.37 -4.07 16 25 C 0.46 5.92 2.67 37.16 0.10 6.02 16 26 F -0.18 -2.29 16.27 2.25 0.04 -2.25 16 27 F -0.16 -2.50 15.91 2.25 0.04 -2.46 16 28 F -0.17 -1.96 14.31 2.25 0.03 -1.93 16 29 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 30 H 0.39 9.42 7.90 -40.82 -0.32 9.10 16 31 H 0.09 1.51 8.13 -51.93 -0.42 1.09 16 32 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 33 H 0.10 0.90 7.43 -51.93 -0.39 0.51 16 34 H 0.10 0.99 7.88 -51.93 -0.41 0.59 16 35 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.49 8.06 -51.93 -0.42 0.07 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 352.41 15.07 5.31 5.31 Total: -1.00 -32.54 352.41 -5.10 -37.64 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -4.69 Total: 6.55 kcal Atomic # 6 Polarization: 13.68 SS G_CDS: -0.19 Total: 13.49 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.67 Total: -37.38 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -1.28 Total: -34.73 kcal Atomic # 9 Polarization: -6.75 SS G_CDS: 0.10 Total: -6.65 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.54 -5.10 -37.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845319474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -283.890 kcal (2) G-P(sol) polarization free energy of solvation -32.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -316.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -321.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds