Wall clock time and date at job start Tue Mar 31 2020 22:32:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86805 * 119.99772 * 2 1 4 4 H 1.48506 * 109.46958 * 239.99542 * 3 2 1 5 5 H 1.48494 * 109.47201 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47231 * 119.99651 * 3 2 1 7 7 C 1.38944 * 119.99975 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99624 * 180.02562 * 7 2 1 9 9 N 1.37090 * 120.00495 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00742 * 179.97438 * 9 7 2 11 11 O 1.21292 * 119.99698 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00347 * 179.97438 * 10 9 7 13 13 O 1.45204 * 109.47298 * 180.02562 * 12 10 9 14 14 C 1.34226 * 117.00437 * 180.02562 * 13 12 10 15 15 O 1.20838 * 119.99735 * 0.02562 * 14 13 12 16 16 C 1.50701 * 120.00486 * 180.02562 * 14 13 12 17 17 H 1.08998 * 109.46507 * 300.00240 * 16 14 13 18 18 C 1.52993 * 109.47099 * 179.97438 * 16 14 13 19 19 C 1.53002 * 109.46786 * 172.82130 * 18 16 14 20 20 H 1.09002 * 110.27237 * 58.93253 * 19 18 16 21 21 C 1.54954 * 110.31192 * 181.12226 * 19 18 16 22 22 C 1.55299 * 100.94424 * 155.36530 * 21 19 18 23 23 C 1.54385 * 102.25117 * 325.86795 * 22 21 19 24 24 O 1.43241 * 107.59041 * 21.35790 * 23 22 21 25 25 C 1.52996 * 109.46802 * 59.99719 * 16 14 13 26 26 F 1.39906 * 109.46979 * 66.38708 * 25 16 14 27 27 F 1.39894 * 109.47688 * 306.38485 * 25 16 14 28 28 F 1.39902 * 109.46985 * 186.38480 * 25 16 14 29 29 H 0.97006 * 120.00032 * 0.02562 * 1 2 3 30 30 H 0.97003 * 120.00002 * 0.02562 * 9 7 2 31 31 H 1.09000 * 109.46911 * 60.00582 * 12 10 9 32 32 H 1.08995 * 109.47790 * 300.00169 * 12 10 9 33 33 H 1.08998 * 109.47584 * 292.82164 * 18 16 14 34 34 H 1.09002 * 109.47267 * 52.82926 * 18 16 14 35 35 H 1.08999 * 111.12109 * 273.28709 * 21 19 18 36 36 H 1.09005 * 111.11896 * 37.43918 * 21 19 18 37 37 H 1.09000 * 110.84490 * 207.68233 * 22 21 19 38 38 H 1.08999 * 111.02690 * 84.13732 * 22 21 19 39 39 H 1.08999 * 109.82978 * 261.84321 * 23 22 21 40 40 H 1.08997 * 109.83338 * 140.87332 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1018 1.6966 1.2125 7 6 2.0088 -1.2033 0.0005 8 1 3.0889 -1.2032 0.0010 9 7 1.3235 -2.3906 0.0005 10 6 1.9973 -3.5578 0.0005 11 8 3.2102 -3.5578 0.0010 12 6 1.2438 -4.8629 0.0011 13 8 2.1874 -5.9665 0.0016 14 6 1.6744 -7.2069 0.0016 15 8 0.4765 -7.3652 0.0008 16 6 2.5924 -8.4021 0.0027 17 1 3.2218 -8.3774 -0.8868 18 6 1.7591 -9.6851 0.0032 19 6 2.6817 -10.8924 -0.1760 20 1 3.4182 -10.9274 0.6268 21 6 1.8541 -12.2021 -0.2067 22 6 2.8053 -13.1334 -1.0064 23 6 3.4682 -12.1520 -1.9969 24 8 3.3379 -10.8335 -1.4524 25 6 3.4741 -8.3667 1.2526 26 9 2.6786 -8.5445 2.3896 27 9 4.1264 -7.1314 1.3284 28 9 4.4235 -9.3919 1.1827 29 1 -0.4850 0.8401 -0.0004 30 1 0.3534 -2.3907 -0.0002 31 1 0.6169 -4.9208 -0.8887 32 1 0.6175 -4.9205 0.8913 33 1 1.2265 -9.7723 0.9502 34 1 1.0408 -9.6522 -0.8160 35 1 1.6855 -12.5838 0.8003 36 1 0.9106 -12.0582 -0.7333 37 1 2.2412 -13.8994 -1.5384 38 1 3.5502 -13.5865 -0.3523 39 1 2.9650 -12.2048 -2.9623 40 1 4.5229 -12.4010 -2.1142 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845319474.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:52 Heat of formation + Delta-G solvation = -341.887228 kcal Electronic energy + Delta-G solvation = -30441.102244 eV Core-core repulsion = 25419.384530 eV Total energy + Delta-G solvation = -5021.717714 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -51.34593 -48.82739 -48.76015 -41.97294 -40.45728 -40.04774 -37.84499 -36.04528 -35.64453 -33.42649 -33.05976 -31.07424 -29.86583 -26.79604 -26.65621 -25.13000 -22.76350 -22.35014 -21.72380 -21.47503 -20.09691 -19.98694 -19.75102 -19.36998 -18.48675 -17.93749 -17.72870 -17.53775 -17.16824 -16.72819 -16.30175 -15.82547 -15.79542 -15.71685 -15.55404 -15.49206 -15.18711 -15.08651 -14.87509 -14.72412 -14.62939 -14.11950 -14.04627 -13.78297 -13.63225 -13.55693 -13.15512 -12.94101 -12.71977 -12.54027 -12.49208 -12.15492 -12.12800 -12.03995 -11.95928 -11.85506 -11.60730 -11.57820 -10.52795 -10.42480 -10.12316 -8.52678 -6.03209 0.57272 1.04015 1.37302 1.43026 1.54167 1.57470 1.86420 2.26856 2.50195 2.58464 2.75889 2.87216 3.07119 3.12690 3.41843 3.44496 3.59152 3.83342 3.89030 4.02537 4.04444 4.11550 4.20209 4.22567 4.27230 4.48414 4.62198 4.76718 4.88611 4.95756 5.02769 5.04485 5.10692 5.28929 5.36546 5.87668 6.06952 6.27373 6.48694 7.02479 7.38920 7.92976 8.64044 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.025981 B = 0.002401 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.462205 B =11659.244312 C =11940.589610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.008 4.008 3 Si 0.997 3.003 4 H -0.270 1.270 5 H -0.269 1.269 6 H -0.271 1.271 7 C -0.338 4.338 8 H 0.083 0.917 9 N -0.557 5.557 10 C 0.435 3.565 11 O -0.615 6.615 12 C 0.069 3.931 13 O -0.334 6.334 14 C 0.466 3.534 15 O -0.496 6.496 16 C -0.118 4.118 17 H 0.169 0.831 18 C -0.103 4.103 19 C 0.060 3.940 20 H 0.088 0.912 21 C -0.147 4.147 22 C -0.150 4.150 23 C 0.041 3.959 24 O -0.401 6.401 25 C 0.463 3.537 26 F -0.178 7.178 27 F -0.178 7.178 28 F -0.162 7.162 29 H 0.281 0.719 30 H 0.401 0.599 31 H 0.115 0.885 32 H 0.110 0.890 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.100 0.900 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.058 -27.003 -0.553 27.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.209 4.209 3 Si 0.820 3.180 4 H -0.195 1.195 5 H -0.193 1.193 6 H -0.196 1.196 7 C -0.467 4.467 8 H 0.101 0.899 9 N -0.194 5.194 10 C 0.221 3.779 11 O -0.502 6.502 12 C -0.008 4.008 13 O -0.249 6.249 14 C 0.307 3.693 15 O -0.383 6.383 16 C -0.138 4.138 17 H 0.186 0.814 18 C -0.140 4.140 19 C 0.003 3.997 20 H 0.106 0.894 21 C -0.184 4.184 22 C -0.188 4.188 23 C -0.035 4.035 24 O -0.322 6.322 25 C 0.409 3.591 26 F -0.159 7.159 27 F -0.159 7.159 28 F -0.143 7.143 29 H 0.091 0.909 30 H 0.235 0.765 31 H 0.133 0.867 32 H 0.128 0.872 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.119 0.881 36 H 0.105 0.895 37 H 0.117 0.883 38 H 0.102 0.898 39 H 0.093 0.907 40 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.430 -26.665 -0.618 26.711 hybrid contribution -0.114 0.947 0.217 0.978 sum 1.316 -25.719 -0.401 25.755 Atomic orbital electron populations 1.69662 1.06893 1.29799 1.49084 1.26112 0.96599 1.02535 0.95650 0.84928 0.77765 0.76179 0.79120 1.19496 1.19307 1.19572 1.19669 0.92925 0.83384 1.50747 0.89854 1.41715 1.09561 1.04110 1.64063 1.20080 0.88114 0.85379 0.84280 1.90550 1.15446 1.87632 1.56564 1.22656 0.90016 0.82190 1.05907 1.86604 1.40794 1.14710 1.82775 1.23195 0.88532 0.84353 0.73190 1.90679 1.16265 1.86592 1.44792 1.22477 0.97965 0.94073 0.99288 0.81406 1.21850 0.97344 0.87969 1.06817 1.23430 0.94126 0.94694 0.87489 0.89400 1.23301 0.99059 0.93151 1.02927 1.23120 0.99129 0.98392 0.98138 1.23304 1.01178 0.81475 0.97518 1.88386 1.80050 1.29289 1.34438 1.20060 0.79861 0.74100 0.85114 1.93206 1.73542 1.95077 1.54097 1.93334 1.82498 1.43469 1.96601 1.93159 1.66098 1.58627 1.96398 0.90934 0.76493 0.86730 0.87167 0.87479 0.87421 0.88136 0.89483 0.88313 0.89755 0.90698 0.90942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.51 13.05 21.66 0.28 -48.23 16 2 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 3 Si 1.00 42.24 29.55 68.60 2.03 44.27 16 4 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 5 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 6 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 7 C -0.34 -19.07 9.68 84.04 0.81 -18.26 16 8 H 0.08 4.99 7.16 -2.91 -0.02 4.97 16 9 N -0.56 -28.61 5.29 -307.00 -1.62 -30.23 16 10 C 0.43 21.37 7.86 87.66 0.69 22.05 16 11 O -0.62 -35.50 16.08 15.73 0.25 -35.25 16 12 C 0.07 2.58 5.94 71.23 0.42 3.00 16 13 O -0.33 -12.36 8.51 -45.02 -0.38 -12.74 16 14 C 0.47 13.90 7.10 71.24 0.51 14.41 16 15 O -0.50 -15.32 15.62 21.93 0.34 -14.98 16 16 C -0.12 -2.72 2.35 -11.54 -0.03 -2.75 16 17 H 0.17 3.58 7.62 -2.39 -0.02 3.56 16 18 C -0.10 -1.79 3.74 30.59 0.11 -1.67 16 19 C 0.06 0.91 3.00 31.26 0.09 1.00 16 20 H 0.09 1.39 5.52 -2.39 -0.01 1.37 16 21 C -0.15 -1.44 6.57 32.05 0.21 -1.23 16 22 C -0.15 -1.25 7.02 31.85 0.22 -1.02 16 23 C 0.04 0.52 7.79 72.45 0.56 1.08 16 24 O -0.40 -7.37 10.43 -148.98 -1.55 -8.92 16 25 C 0.46 11.60 2.67 71.98 0.19 11.79 16 26 F -0.18 -4.40 16.27 44.97 0.73 -3.67 16 27 F -0.18 -5.78 15.91 44.97 0.72 -5.07 16 28 F -0.16 -3.56 14.31 44.97 0.64 -2.92 16 29 H 0.28 13.93 8.31 -92.70 -0.77 13.16 16 30 H 0.40 19.25 7.90 -92.71 -0.73 18.51 16 31 H 0.11 3.70 8.13 -2.39 -0.02 3.68 16 32 H 0.11 3.64 8.13 -2.39 -0.02 3.62 16 33 H 0.11 1.72 7.43 -2.39 -0.02 1.70 16 34 H 0.11 1.85 7.88 -2.39 -0.02 1.83 16 35 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.09 0.80 8.06 -2.38 -0.02 0.78 16 37 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.07 0.82 8.14 -2.39 -0.02 0.81 16 Total: -1.00 -69.99 352.41 6.08 -63.91 By element: Atomic # 1 Polarization: 25.02 SS G_CDS: 0.37 Total: 25.39 kcal Atomic # 6 Polarization: 24.16 SS G_CDS: 4.27 Total: 28.43 kcal Atomic # 7 Polarization: -77.12 SS G_CDS: -1.34 Total: -78.46 kcal Atomic # 8 Polarization: -70.55 SS G_CDS: -1.34 Total: -71.89 kcal Atomic # 9 Polarization: -13.75 SS G_CDS: 2.09 Total: -11.65 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 2.03 Total: 44.27 kcal Total: -69.99 6.08 -63.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845319474.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -277.977 kcal (2) G-P(sol) polarization free energy of solvation -69.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -347.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -341.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds