Wall clock time and date at job start Tue Mar 31 2020 22:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86798 * 119.99953 * 2 1 4 4 H 1.48500 * 109.47198 * 90.00206 * 3 2 1 5 5 H 1.48500 * 109.47015 * 210.00092 * 3 2 1 6 6 H 1.48499 * 109.47210 * 330.00140 * 3 2 1 7 7 C 1.38949 * 119.99914 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99722 * 180.02562 * 7 2 1 9 9 N 1.37093 * 120.00185 * 359.97438 * 7 2 1 10 10 C 1.34779 * 120.00346 * 180.02562 * 9 7 2 11 11 O 1.21289 * 119.99400 * 0.02562 * 10 9 7 12 12 C 1.50700 * 120.00286 * 179.97438 * 10 9 7 13 13 O 1.45198 * 109.46944 * 180.02562 * 12 10 9 14 14 C 1.34228 * 116.99765 * 180.02562 * 13 12 10 15 15 O 1.20831 * 120.00316 * 359.97438 * 14 13 12 16 16 C 1.50699 * 119.99991 * 180.02562 * 14 13 12 17 17 H 1.09008 * 109.47342 * 59.99766 * 16 14 13 18 18 C 1.53004 * 109.47318 * 179.97438 * 16 14 13 19 19 C 1.52995 * 109.47306 * 186.80256 * 18 16 14 20 20 H 1.09006 * 110.32994 * 303.73408 * 19 18 16 21 21 C 1.54476 * 110.37392 * 181.48610 * 19 18 16 22 22 C 1.54499 * 104.06460 * 217.18997 * 21 19 18 23 23 C 1.54475 * 104.06371 * 359.97438 * 22 21 19 24 24 O 1.44421 * 104.80433 * 23.97798 * 23 22 21 25 25 C 1.52998 * 109.47055 * 299.99588 * 16 14 13 26 26 F 1.39903 * 109.47093 * 53.81153 * 25 16 14 27 27 F 1.39903 * 109.47081 * 173.80659 * 25 16 14 28 28 F 1.39896 * 109.47181 * 293.80910 * 25 16 14 29 29 H 0.96996 * 119.99827 * 179.97438 * 1 2 3 30 30 H 0.97006 * 119.99909 * 0.02562 * 9 7 2 31 31 H 1.08998 * 109.46979 * 300.00333 * 12 10 9 32 32 H 1.08998 * 109.46857 * 60.00016 * 12 10 9 33 33 H 1.09002 * 109.47366 * 306.80533 * 18 16 14 34 34 H 1.09007 * 109.46726 * 66.80255 * 18 16 14 35 35 H 1.08999 * 110.51250 * 335.83440 * 21 19 18 36 36 H 1.09002 * 110.51522 * 98.54410 * 21 19 18 37 37 H 1.09001 * 110.51565 * 118.64082 * 22 21 19 38 38 H 1.09004 * 110.51576 * 241.21348 * 22 21 19 39 39 H 1.08997 * 110.37717 * 142.81163 * 23 22 21 40 40 H 1.09002 * 110.37134 * 265.03520 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0464 1.4001 5 1 3.5457 1.4401 -0.7001 6 1 1.4456 2.6527 -0.7000 7 6 2.0089 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3234 -2.3906 -0.0005 10 6 1.9973 -3.5579 -0.0005 11 8 3.2102 -3.5578 -0.0001 12 6 1.2438 -4.8630 0.0000 13 8 2.1874 -5.9666 0.0005 14 6 1.6743 -7.2069 0.0006 15 8 0.4764 -7.3653 0.0006 16 6 2.5923 -8.4020 0.0016 17 1 3.2206 -8.3769 0.8921 18 6 1.7590 -9.6853 0.0021 19 6 2.6824 -10.8929 0.1740 20 1 3.4448 -10.9007 -0.6050 21 6 1.8656 -12.2036 0.1401 22 6 2.5613 -13.1067 1.1829 23 6 3.7166 -12.2351 1.7231 24 8 3.2970 -10.8746 1.4806 25 6 3.4758 -8.3676 -1.2470 26 9 4.1317 -7.1340 -1.3203 27 9 4.4223 -9.3954 -1.1770 28 9 2.6815 -8.5418 -2.3853 29 1 -0.4850 -0.8400 -0.0004 30 1 0.3534 -2.3906 -0.0005 31 1 0.6175 -4.9205 0.8902 32 1 0.6168 -4.9209 -0.8897 33 1 1.0445 -9.6542 0.8246 34 1 1.2220 -9.7700 -0.9427 35 1 0.8308 -12.0163 0.4268 36 1 1.9124 -12.6574 -0.8499 37 1 1.8705 -13.3658 1.9853 38 1 2.9500 -14.0081 0.7090 39 1 3.8531 -12.4053 2.7910 40 1 4.6391 -12.4513 1.1842 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845319478.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:54 Heat of formation + Delta-G solvation = -341.371570 kcal Electronic energy + Delta-G solvation = -30479.551569 eV Core-core repulsion = 25457.856215 eV Total energy + Delta-G solvation = -5021.695354 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.39980 -48.88576 -48.80736 -42.04990 -40.49713 -40.19265 -37.94772 -36.43660 -35.69237 -33.33133 -33.03355 -31.06692 -29.84304 -26.73153 -26.52916 -25.19933 -23.08706 -22.06850 -21.99786 -21.79634 -20.13120 -20.01730 -19.82208 -19.45200 -18.58075 -18.40796 -17.68714 -17.32384 -17.13694 -16.68111 -16.48546 -16.35280 -15.83737 -15.64641 -15.62441 -15.50875 -15.22079 -15.00408 -14.93786 -14.92294 -14.58751 -14.44109 -14.09090 -13.87373 -13.67498 -13.41339 -13.02303 -12.84373 -12.79297 -12.54736 -12.20042 -12.06996 -12.01523 -11.96939 -11.92292 -11.90109 -11.60769 -11.44317 -10.68940 -10.60565 -10.21132 -8.99274 -6.15257 0.50994 0.96086 1.44393 1.51923 1.55599 1.83360 1.85158 2.34642 2.45308 2.54699 2.69383 2.90530 2.96168 3.09118 3.34205 3.38955 3.62747 3.79119 3.80642 3.92819 3.99764 4.00584 4.04205 4.21753 4.23077 4.49316 4.56071 4.72296 4.86838 4.91958 4.98451 5.00035 5.13872 5.18996 5.53913 5.86921 5.87711 6.20013 6.44926 6.60170 7.28784 7.72439 8.47887 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.026097 B = 0.002405 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.667011 B =11639.576208 C =11931.441448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C -0.037 4.037 3 Si 1.137 2.863 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.272 1.272 7 C -0.412 4.412 8 H 0.078 0.922 9 N -0.571 5.571 10 C 0.439 3.561 11 O -0.609 6.609 12 C 0.069 3.931 13 O -0.334 6.334 14 C 0.467 3.533 15 O -0.495 6.495 16 C -0.119 4.119 17 H 0.170 0.830 18 C -0.098 4.098 19 C 0.052 3.948 20 H 0.090 0.910 21 C -0.148 4.148 22 C -0.151 4.151 23 C 0.036 3.964 24 O -0.393 6.393 25 C 0.464 3.536 26 F -0.178 7.178 27 F -0.161 7.161 28 F -0.177 7.177 29 H 0.262 0.738 30 H 0.389 0.611 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.092 0.908 39 H 0.100 0.900 40 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.140 -27.636 0.363 27.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.236 4.236 3 Si 0.956 3.044 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.196 1.196 7 C -0.540 4.540 8 H 0.096 0.904 9 N -0.211 5.211 10 C 0.226 3.774 11 O -0.495 6.495 12 C -0.008 4.008 13 O -0.249 6.249 14 C 0.308 3.692 15 O -0.382 6.382 16 C -0.139 4.139 17 H 0.187 0.813 18 C -0.135 4.135 19 C -0.005 4.005 20 H 0.108 0.892 21 C -0.186 4.186 22 C -0.189 4.189 23 C -0.040 4.040 24 O -0.313 6.313 25 C 0.409 3.591 26 F -0.159 7.159 27 F -0.142 7.142 28 F -0.159 7.159 29 H 0.073 0.927 30 H 0.224 0.776 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.101 0.899 36 H 0.112 0.888 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.118 0.882 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.431 -25.808 0.467 25.927 hybrid contribution -0.312 -1.617 -0.265 1.668 sum 2.119 -27.425 0.202 27.507 Atomic orbital electron populations 1.70943 1.07008 1.29744 1.47161 1.27916 0.96643 1.05337 0.93691 0.82583 0.73660 0.69931 0.78202 1.19373 1.20159 1.19635 1.20585 0.94129 0.85018 1.54310 0.90430 1.41777 1.08868 1.04897 1.65526 1.20062 0.88141 0.85219 0.83945 1.90559 1.15470 1.87542 1.55912 1.22644 0.90009 0.82099 1.06023 1.86607 1.40702 1.14711 1.82861 1.23182 0.88547 0.84283 0.73178 1.90682 1.16249 1.86555 1.44713 1.22502 0.97967 0.94043 0.99395 0.81300 1.21759 0.97252 0.87615 1.06880 1.23488 0.95020 0.94753 0.87249 0.89247 1.22981 1.00394 0.93937 1.01287 1.22938 0.97744 0.99135 0.99077 1.23594 0.97317 0.80618 1.02479 1.89099 1.78445 1.29292 1.34468 1.20048 0.79861 0.74105 0.85076 1.93338 1.82341 1.43601 1.96608 1.93142 1.66304 1.58366 1.96391 1.93208 1.73586 1.95114 1.53961 0.92741 0.77632 0.86596 0.87010 0.87373 0.87390 0.89948 0.88807 0.90144 0.88891 0.88187 0.91537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.92 13.68 21.66 0.30 -49.62 16 2 C -0.04 -1.97 5.50 84.93 0.47 -1.50 16 3 Si 1.14 47.80 29.92 68.60 2.05 49.85 16 4 H -0.27 -10.61 7.11 99.48 0.71 -9.91 16 5 H -0.28 -11.26 7.11 99.48 0.71 -10.55 16 6 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 7 C -0.41 -23.32 9.68 84.04 0.81 -22.51 16 8 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 9 N -0.57 -28.91 5.28 -306.99 -1.62 -30.53 16 10 C 0.44 21.40 7.86 87.66 0.69 22.08 16 11 O -0.61 -35.13 16.08 15.74 0.25 -34.87 16 12 C 0.07 2.52 5.94 71.24 0.42 2.94 16 13 O -0.33 -12.13 8.51 -45.04 -0.38 -12.52 16 14 C 0.47 13.63 7.09 71.24 0.51 14.14 16 15 O -0.49 -14.98 15.63 21.95 0.34 -14.64 16 16 C -0.12 -2.67 2.36 -11.54 -0.03 -2.70 16 17 H 0.17 3.47 7.73 -2.38 -0.02 3.45 16 18 C -0.10 -1.69 3.62 30.59 0.11 -1.58 16 19 C 0.05 0.78 2.89 31.09 0.09 0.87 16 20 H 0.09 1.36 5.35 -2.38 -0.01 1.35 16 21 C -0.15 -1.54 6.63 31.61 0.21 -1.33 16 22 C -0.15 -1.32 7.09 31.61 0.22 -1.10 16 23 C 0.04 0.43 7.63 72.48 0.55 0.99 16 24 O -0.39 -7.07 10.87 -148.98 -1.62 -8.69 16 25 C 0.46 11.29 2.67 71.98 0.19 11.48 16 26 F -0.18 -5.66 15.91 44.97 0.72 -4.95 16 27 F -0.16 -3.39 14.24 44.97 0.64 -2.75 16 28 F -0.18 -4.29 16.29 44.97 0.73 -3.56 16 29 H 0.26 13.82 6.77 -92.71 -0.63 13.19 16 30 H 0.39 17.76 6.73 -92.70 -0.62 17.13 16 31 H 0.12 3.62 8.13 -2.39 -0.02 3.60 16 32 H 0.11 3.58 8.13 -2.39 -0.02 3.56 16 33 H 0.11 1.86 7.89 -2.39 -0.02 1.85 16 34 H 0.11 1.71 7.45 -2.38 -0.02 1.69 16 35 H 0.08 0.82 7.87 -2.39 -0.02 0.81 16 36 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 38 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -72.71 350.64 6.28 -66.42 By element: Atomic # 1 Polarization: 23.44 SS G_CDS: 0.63 Total: 24.07 kcal Atomic # 6 Polarization: 17.54 SS G_CDS: 4.25 Total: 21.80 kcal Atomic # 7 Polarization: -78.83 SS G_CDS: -1.33 Total: -80.16 kcal Atomic # 8 Polarization: -69.31 SS G_CDS: -1.41 Total: -70.72 kcal Atomic # 9 Polarization: -13.35 SS G_CDS: 2.09 Total: -11.26 kcal Atomic # 14 Polarization: 47.80 SS G_CDS: 2.05 Total: 49.85 kcal Total: -72.71 6.28 -66.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845319478.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -274.950 kcal (2) G-P(sol) polarization free energy of solvation -72.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -347.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -341.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds