Wall clock time and date at job start Tue Mar 31 2020 22:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31418 * 1 3 3 Si 1.86803 * 119.99961 * 2 1 4 4 H 1.48497 * 109.46859 * 240.00118 * 3 2 1 5 5 H 1.48504 * 109.46954 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.46923 * 119.99968 * 3 2 1 7 7 C 1.38952 * 120.00231 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00286 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99780 * 359.97438 * 7 2 1 10 10 C 1.34774 * 120.00096 * 180.02562 * 9 7 2 11 11 O 1.21298 * 119.99444 * 0.02562 * 10 9 7 12 12 C 1.50692 * 120.00219 * 179.97438 * 10 9 7 13 13 O 1.45199 * 109.47342 * 179.97438 * 12 10 9 14 14 C 1.34230 * 117.00103 * 180.02562 * 13 12 10 15 15 O 1.20823 * 119.99848 * 0.02562 * 14 13 12 16 16 C 1.50699 * 119.99923 * 180.02562 * 14 13 12 17 17 H 1.09001 * 109.47357 * 299.99969 * 16 14 13 18 18 C 1.53002 * 109.47237 * 180.02562 * 16 14 13 19 19 C 1.52996 * 109.47181 * 66.57740 * 18 16 14 20 20 H 1.09007 * 110.27529 * 303.18777 * 19 18 16 21 21 C 1.55494 * 110.28590 * 181.02801 * 19 18 16 22 22 C 1.55310 * 100.69752 * 204.65454 * 21 19 18 23 23 C 1.54382 * 102.43307 * 34.12586 * 22 21 19 24 24 O 1.43231 * 107.59147 * 338.54447 * 23 22 21 25 25 C 1.53001 * 109.47262 * 59.99827 * 16 14 13 26 26 F 1.39900 * 109.47305 * 175.97831 * 25 16 14 27 27 F 1.39900 * 109.47342 * 295.98151 * 25 16 14 28 28 F 1.39898 * 109.46752 * 55.98075 * 25 16 14 29 29 H 0.96994 * 119.99571 * 0.02562 * 1 2 3 30 30 H 0.97004 * 119.99544 * 0.02562 * 9 7 2 31 31 H 1.09001 * 109.47052 * 60.00501 * 12 10 9 32 32 H 1.09004 * 109.47553 * 300.00147 * 12 10 9 33 33 H 1.09003 * 109.46836 * 306.57612 * 18 16 14 34 34 H 1.09001 * 109.47289 * 186.57742 * 18 16 14 35 35 H 1.08998 * 111.33610 * 86.77640 * 21 19 18 36 36 H 1.09011 * 111.14706 * 322.44743 * 21 19 18 37 37 H 1.09002 * 110.84261 * 275.83199 * 22 21 19 38 38 H 1.08998 * 110.84511 * 152.42123 * 22 21 19 39 39 H 1.09001 * 109.82939 * 98.05961 * 23 22 21 40 40 H 1.09005 * 109.82622 * 218.93602 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6178 0.0000 4 1 3.1019 1.6964 -1.2125 5 1 1.2831 2.7465 0.0006 6 1 3.1019 1.6964 1.2125 7 6 2.0090 -1.2033 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3235 -2.3907 -0.0005 10 6 1.9973 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0001 12 6 1.2439 -4.8629 0.0000 13 8 2.1874 -5.9665 -0.0007 14 6 1.6744 -7.2069 -0.0008 15 8 0.4766 -7.3652 -0.0008 16 6 2.5924 -8.4020 -0.0010 17 1 3.2212 -8.3771 -0.8910 18 6 1.7591 -9.6852 -0.0018 19 6 1.0009 -9.8002 -1.3257 20 1 0.3803 -8.9180 -1.4834 21 6 0.1268 -11.0861 -1.3364 22 6 0.0054 -11.3395 -2.8639 23 6 1.3742 -10.8573 -3.3905 24 8 1.9225 -9.9627 -2.4155 25 6 3.4751 -8.3673 1.2482 26 9 4.2624 -9.5228 1.2953 27 9 4.3030 -7.2404 1.2031 28 9 2.6670 -8.3068 2.3886 29 1 -0.4849 0.8400 -0.0004 30 1 0.3534 -2.3906 -0.0005 31 1 0.6170 -4.9209 -0.8897 32 1 0.6175 -4.9205 0.8903 33 1 1.0474 -9.6567 0.8233 34 1 2.4174 -10.5460 0.1158 35 1 -0.8507 -10.9049 -0.8894 36 1 0.6365 -11.9123 -0.8404 37 1 -0.8048 -10.7491 -3.2918 38 1 -0.1383 -12.3999 -3.0709 39 1 2.0396 -11.7099 -3.5257 40 1 1.2428 -10.3369 -4.3393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845319480.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:57 Heat of formation + Delta-G solvation = -325.034224 kcal Electronic energy + Delta-G solvation = -30486.275834 eV Core-core repulsion = 25465.288921 eV Total energy + Delta-G solvation = -5020.986913 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -50.24120 -47.77349 -47.61484 -40.82641 -39.63347 -38.20853 -36.47396 -34.62624 -34.00678 -32.46016 -31.39106 -30.20224 -28.39937 -25.88871 -24.89718 -23.84352 -22.09494 -21.77929 -20.56020 -19.61899 -18.92040 -18.46538 -18.41619 -18.07937 -17.32014 -17.06070 -16.42897 -16.10287 -16.02027 -15.58518 -14.93007 -14.69996 -14.54656 -14.44123 -14.11596 -14.08533 -14.05429 -13.95614 -13.78180 -13.75240 -13.44018 -13.13406 -12.72686 -12.57503 -12.34262 -12.19512 -12.05076 -11.96731 -11.61933 -11.49869 -11.19781 -11.16426 -11.11076 -10.68247 -10.52986 -10.48609 -10.29102 -9.74168 -9.59505 -8.53232 -8.08413 -6.50065 -3.92032 1.75426 2.31790 2.63526 3.15896 3.23146 3.27709 3.40488 3.49314 3.65959 3.72797 3.87300 4.12266 4.13832 4.36704 4.47779 4.53463 4.58254 4.71953 4.83427 4.93066 4.99112 5.11966 5.14142 5.23441 5.34397 5.41807 5.44408 5.45809 5.59294 5.63610 5.65389 5.84066 6.01623 6.41159 6.70221 7.47904 7.54829 7.93533 8.48044 9.06989 9.38561 9.88595 10.67121 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.015466 B = 0.002788 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.992146 B =10041.748746 C =11126.490498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.025 3.975 3 Si 0.935 3.065 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.272 1.272 7 C -0.302 4.302 8 H 0.106 0.894 9 N -0.552 5.552 10 C 0.437 3.563 11 O -0.571 6.571 12 C 0.060 3.940 13 O -0.313 6.313 14 C 0.467 3.533 15 O -0.489 6.489 16 C -0.128 4.128 17 H 0.159 0.841 18 C -0.106 4.106 19 C 0.075 3.925 20 H 0.093 0.907 21 C -0.148 4.148 22 C -0.157 4.157 23 C 0.052 3.948 24 O -0.383 6.383 25 C 0.464 3.536 26 F -0.176 7.176 27 F -0.157 7.157 28 F -0.178 7.178 29 H 0.274 0.726 30 H 0.395 0.605 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.300 -23.869 -2.447 24.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.177 4.177 3 Si 0.761 3.239 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.431 4.431 8 H 0.124 0.876 9 N -0.189 5.189 10 C 0.222 3.778 11 O -0.455 6.455 12 C -0.017 4.017 13 O -0.227 6.227 14 C 0.308 3.692 15 O -0.377 6.377 16 C -0.148 4.148 17 H 0.177 0.823 18 C -0.143 4.143 19 C 0.018 3.982 20 H 0.111 0.889 21 C -0.185 4.185 22 C -0.195 4.195 23 C -0.024 4.024 24 O -0.303 6.303 25 C 0.409 3.591 26 F -0.157 7.157 27 F -0.138 7.138 28 F -0.159 7.159 29 H 0.084 0.916 30 H 0.228 0.772 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.762 -23.592 -2.429 23.729 hybrid contribution -0.460 0.759 0.121 0.896 sum -1.222 -22.833 -2.307 22.982 Atomic orbital electron populations 1.69606 1.05997 1.28593 1.49643 1.25308 0.95686 0.99855 0.96855 0.85855 0.78755 0.80045 0.79231 1.19731 1.20873 1.19732 1.19685 0.93480 0.81722 1.48254 0.87625 1.41683 1.09337 1.04030 1.63898 1.19257 0.88375 0.83975 0.86195 1.90588 1.13274 1.86657 1.54963 1.22865 0.90747 0.84388 1.03733 1.86596 1.40267 1.13710 1.82080 1.22663 0.88084 0.84776 0.73708 1.90644 1.15854 1.86553 1.44671 1.22391 0.98278 0.94818 0.99350 0.82344 1.21760 0.99578 0.93879 0.99123 1.23246 0.90034 0.99084 0.85821 0.88894 1.23346 1.01185 0.97552 0.96464 1.23120 0.98108 1.02563 0.95675 1.23098 0.93917 0.93178 0.92244 1.88393 1.43311 1.66425 1.32133 1.19906 0.79881 0.74500 0.84767 1.93196 1.75845 1.49933 1.96725 1.93354 1.72975 1.51102 1.96418 1.93220 1.72877 1.96076 1.53767 0.91576 0.77176 0.89222 0.89219 0.88098 0.88327 0.89390 0.90125 0.90356 0.89968 0.91275 0.91311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.02 13.05 55.50 0.72 -23.30 16 2 C 0.03 0.67 5.50 -17.46 -0.10 0.57 16 3 Si 0.93 20.76 29.55 -169.99 -5.02 15.73 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 7 C -0.30 -8.35 9.68 -14.93 -0.14 -8.49 16 8 H 0.11 3.05 7.16 -52.49 -0.38 2.67 16 9 N -0.55 -13.93 5.29 -10.97 -0.06 -13.98 16 10 C 0.44 10.55 7.86 -10.99 -0.09 10.47 16 11 O -0.57 -15.99 16.08 -14.12 -0.23 -16.21 16 12 C 0.06 1.13 5.94 36.00 0.21 1.34 16 13 O -0.31 -5.81 8.89 -45.90 -0.41 -6.22 16 14 C 0.47 7.10 6.60 36.01 0.24 7.34 16 15 O -0.49 -7.60 13.85 -18.75 -0.26 -7.86 16 16 C -0.13 -1.53 2.25 -91.77 -0.21 -1.74 16 17 H 0.16 1.74 7.70 -51.93 -0.40 1.34 16 18 C -0.11 -1.01 3.87 -26.73 -0.10 -1.11 16 19 C 0.08 0.73 3.20 -25.41 -0.08 0.65 16 20 H 0.09 1.08 6.13 -51.92 -0.32 0.76 16 21 C -0.15 -1.04 6.61 -24.18 -0.16 -1.20 16 22 C -0.16 -1.00 7.00 -24.78 -0.17 -1.17 16 23 C 0.05 0.41 7.80 37.88 0.30 0.70 16 24 O -0.38 -4.09 10.53 -35.23 -0.37 -4.46 16 25 C 0.46 5.95 2.69 37.16 0.10 6.05 16 26 F -0.18 -1.99 16.53 2.25 0.04 -1.95 16 27 F -0.16 -2.49 16.41 2.25 0.04 -2.45 16 28 F -0.18 -2.39 16.68 2.25 0.04 -2.35 16 29 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 30 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 31 H 0.09 1.50 8.13 -51.93 -0.42 1.07 16 32 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 33 H 0.10 0.92 7.83 -51.93 -0.41 0.51 16 34 H 0.10 0.77 7.51 -51.93 -0.39 0.38 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.48 8.06 -51.92 -0.42 0.07 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 354.76 15.07 5.35 5.35 Total: -1.00 -32.26 354.76 -5.09 -37.35 By element: Atomic # 1 Polarization: 11.67 SS G_CDS: -4.72 Total: 6.95 kcal Atomic # 6 Polarization: 13.62 SS G_CDS: -0.20 Total: 13.41 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.67 Total: -37.28 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -1.27 Total: -34.76 kcal Atomic # 9 Polarization: -6.87 SS G_CDS: 0.11 Total: -6.75 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -32.26 -5.09 -37.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845319480.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -287.683 kcal (2) G-P(sol) polarization free energy of solvation -32.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -319.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -325.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds