Wall clock time and date at job start Tue Mar 31 2020 22:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47016 * 2 1 4 4 H 1.09007 * 109.46945 * 305.63697 * 3 2 1 5 5 C 1.50703 * 109.47064 * 185.64319 * 3 2 1 6 6 H 1.08004 * 119.99228 * 239.99808 * 5 3 2 7 7 C 1.37870 * 120.00466 * 59.99563 * 5 3 2 8 8 N 1.31520 * 119.99987 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 120.00133 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47016 * 359.97438 * 9 7 5 11 11 H 1.48496 * 109.46801 * 120.00192 * 9 7 5 12 12 H 1.48502 * 109.46985 * 239.99861 * 9 7 5 13 13 N 1.46895 * 109.47652 * 65.63711 * 3 2 1 14 14 C 1.46903 * 111.00547 * 205.21276 * 13 3 2 15 15 C 1.50692 * 109.47021 * 184.76476 * 14 13 3 16 16 O 1.21280 * 120.00586 * 359.97438 * 15 14 13 17 17 N 1.34788 * 119.99725 * 179.97438 * 15 14 13 18 18 N 1.40100 * 119.99968 * 180.02562 * 17 15 14 19 19 C 1.34771 * 119.99887 * 180.02562 * 18 17 15 20 20 O 1.21566 * 119.99982 * 359.97438 * 19 18 17 21 21 C 1.47772 * 120.00065 * 179.97438 * 19 18 17 22 22 C 1.39628 * 120.15186 * 359.97438 * 21 19 18 23 23 C 1.37902 * 119.86393 * 179.97438 * 22 21 19 24 24 C 1.38425 * 120.17933 * 0.02685 * 23 22 21 25 25 C 1.38264 * 120.31966 * 359.97438 * 24 23 22 26 26 C 1.38152 * 120.12949 * 359.71689 * 25 24 23 27 27 Cl 1.73609 * 120.09377 * 180.30353 * 26 25 24 28 28 H 1.08994 * 109.47360 * 294.29114 * 1 2 3 29 29 H 1.09001 * 109.46828 * 54.29587 * 1 2 3 30 30 H 1.08999 * 109.46862 * 174.28717 * 1 2 3 31 31 H 1.08998 * 109.47192 * 239.99762 * 2 1 3 32 32 H 1.08995 * 109.46789 * 119.99333 * 2 1 3 33 33 H 0.97000 * 119.99924 * 179.97438 * 8 7 5 34 34 H 1.00905 * 110.99667 * 329.17244 * 13 3 2 35 35 H 1.08994 * 109.46472 * 304.76986 * 14 13 3 36 36 H 1.08999 * 109.46654 * 64.76771 * 14 13 3 37 37 H 0.96999 * 119.99624 * 0.02562 * 17 15 14 38 38 H 0.97006 * 119.99484 * 359.97438 * 18 17 15 39 39 H 1.07992 * 120.07263 * 359.97438 * 22 21 19 40 40 H 1.07989 * 119.91045 * 179.97438 * 23 22 21 41 41 H 1.08002 * 119.83593 * 179.97438 * 24 23 22 42 42 H 1.08000 * 119.93409 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5966 1.9846 -0.8353 5 6 3.5406 1.4448 -0.1397 6 1 4.1539 1.8866 0.6317 7 6 4.1303 0.8830 -1.2521 8 7 3.3833 0.3446 -2.1912 9 14 5.9903 0.8853 -1.4249 10 1 6.5965 1.5462 -0.2413 11 1 6.4805 -0.5134 -1.5167 12 1 6.3723 1.6255 -2.6543 13 7 1.6647 2.0947 1.2616 14 6 1.5791 3.5518 1.0960 15 6 1.3080 4.1941 2.4319 16 8 1.1965 3.5059 3.4243 17 7 1.1895 5.5336 2.5240 18 7 0.9379 6.1309 3.7661 19 6 0.8189 7.4701 3.8581 20 8 0.9302 8.1600 2.8633 21 6 0.5530 8.1001 5.1681 22 6 0.4240 7.3107 6.3126 23 6 0.1765 7.9049 7.5322 24 6 0.0551 9.2807 7.6241 25 6 0.1815 10.0695 6.4956 26 6 0.4359 9.4885 5.2683 27 17 0.6022 10.4804 3.8533 28 1 -0.3634 0.4227 0.9366 29 1 -0.3633 0.5998 -0.8345 30 1 -0.3633 -1.0226 -0.1023 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5137 0.8900 33 1 3.7982 -0.0503 -2.9740 34 1 0.7985 1.7198 1.6186 35 1 2.5209 3.9278 0.6964 36 1 0.7700 3.7922 0.4064 37 1 1.2783 6.0840 1.7302 38 1 0.8487 5.5803 4.5598 39 1 0.5179 6.2372 6.2429 40 1 0.0762 7.2951 8.4178 41 1 -0.1392 9.7402 8.5820 42 1 0.0861 11.1424 6.5746 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846984424.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:05 Heat of formation + Delta-G solvation = -5.977780 kcal Electronic energy + Delta-G solvation = -25889.110730 eV Core-core repulsion = 21896.817799 eV Total energy + Delta-G solvation = -3992.292932 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.77333 -39.55405 -38.45600 -36.70853 -36.23058 -35.25168 -32.78260 -32.41514 -31.31591 -31.21698 -30.38362 -27.22514 -25.38234 -24.25506 -23.12189 -22.58600 -21.54894 -20.71224 -19.66997 -18.47701 -17.89485 -17.00478 -16.39873 -16.13691 -15.90494 -15.73827 -15.22954 -15.05975 -14.73648 -14.61216 -14.48202 -14.05119 -13.77602 -13.60957 -13.34446 -12.62790 -12.45352 -12.22199 -12.20189 -12.02131 -11.85480 -11.51649 -11.49833 -11.23972 -11.15621 -10.88669 -10.61715 -10.11877 -9.99035 -9.97980 -9.67859 -9.66665 -9.54355 -9.25529 -9.12654 -8.39809 -8.36960 -7.33087 -6.00273 -4.04836 0.20844 0.63684 1.67560 1.82645 2.34389 2.81065 3.26363 3.30594 3.39001 3.44467 3.75854 4.14482 4.26217 4.38746 4.43386 4.69398 4.72602 4.92640 5.07143 5.19368 5.24584 5.33062 5.51225 5.60867 5.78399 5.78843 5.99763 6.11288 6.15809 6.17496 6.40031 6.56952 6.61772 6.82763 7.01661 7.11370 7.36236 7.49408 7.74179 7.77283 7.87791 8.16906 8.32175 8.41268 8.66929 9.03460 9.60736 11.05022 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017411 B = 0.002134 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.824894 B =13120.347395 C =13736.944514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C 0.219 3.781 4 H 0.005 0.995 5 C -0.496 4.496 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.286 1.286 13 N -0.669 5.669 14 C 0.063 3.937 15 C 0.516 3.484 16 O -0.526 6.526 17 N -0.530 5.530 18 N -0.516 5.516 19 C 0.551 3.449 20 O -0.516 6.516 21 C -0.121 4.121 22 C -0.074 4.074 23 C -0.122 4.122 24 C -0.080 4.080 25 C -0.121 4.121 26 C 0.017 3.983 27 Cl -0.028 7.028 28 H 0.036 0.964 29 H 0.042 0.958 30 H 0.038 0.962 31 H 0.102 0.898 32 H 0.043 0.957 33 H 0.260 0.740 34 H 0.328 0.672 35 H 0.112 0.888 36 H 0.053 0.947 37 H 0.432 0.568 38 H 0.428 0.572 39 H 0.137 0.863 40 H 0.138 0.862 41 H 0.138 0.862 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.356 18.258 17.743 27.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.164 4.164 3 C 0.113 3.887 4 H 0.023 0.977 5 C -0.535 4.535 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.212 1.212 13 N -0.302 5.302 14 C -0.072 4.072 15 C 0.304 3.696 16 O -0.399 6.399 17 N -0.282 5.282 18 N -0.264 5.264 19 C 0.337 3.663 20 O -0.391 6.391 21 C -0.126 4.126 22 C -0.093 4.093 23 C -0.140 4.140 24 C -0.099 4.099 25 C -0.140 4.140 26 C -0.012 4.012 27 Cl 0.002 6.998 28 H 0.055 0.945 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.120 0.880 32 H 0.062 0.938 33 H 0.069 0.931 34 H 0.146 0.854 35 H 0.130 0.870 36 H 0.071 0.929 37 H 0.274 0.726 38 H 0.271 0.729 39 H 0.155 0.845 40 H 0.156 0.844 41 H 0.156 0.844 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -8.662 18.217 17.646 26.801 hybrid contribution 0.195 0.103 -0.711 0.745 sum -8.468 18.320 16.935 26.346 Atomic orbital electron populations 1.21896 0.99530 0.99908 0.99575 1.21762 0.91302 0.99979 1.03321 1.19234 0.95747 0.90221 0.83520 0.97712 1.21248 0.91120 1.36851 1.04272 0.91888 1.24957 0.98197 0.95505 0.95813 1.69878 1.34670 1.39373 1.09565 0.86483 0.85659 0.77668 0.77859 1.19752 1.21098 1.21215 1.60382 1.37448 0.99262 1.33118 1.21632 1.03082 0.92697 0.89755 1.21667 0.75522 0.79158 0.93287 1.90674 1.49286 1.61759 1.38182 1.45256 1.75450 1.06491 1.00960 1.44643 1.72915 1.05666 1.03129 1.18105 0.78484 0.80518 0.89154 1.90906 1.49822 1.61374 1.36965 1.19485 1.07166 0.92537 0.93433 1.21398 0.96301 1.00014 0.91574 1.21241 0.99801 0.95132 0.97828 1.21385 0.96326 0.93722 0.98448 1.21120 1.01195 1.01197 0.90479 1.21040 0.99622 0.90510 0.89990 1.98437 1.95205 1.67973 1.38194 0.94533 0.93847 0.94243 0.88025 0.93793 0.93057 0.85391 0.87044 0.92932 0.72603 0.72874 0.84496 0.84395 0.84407 0.84080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.64 37.16 0.36 -2.52 16 2 C -0.13 -2.89 5.36 -26.73 -0.14 -3.04 16 3 C 0.22 5.27 2.02 -68.87 -0.14 5.13 16 4 H 0.01 0.14 7.85 -51.93 -0.41 -0.27 16 5 C -0.50 -13.32 8.55 -34.44 -0.29 -13.61 16 6 H 0.06 1.74 7.81 -52.48 -0.41 1.33 16 7 C 0.06 1.51 5.29 -17.82 -0.09 1.42 16 8 N -0.90 -24.84 11.29 55.43 0.63 -24.22 16 9 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 10 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 13 N -0.67 -14.03 5.84 -109.23 -0.64 -14.67 16 14 C 0.06 1.09 5.94 -4.98 -0.03 1.06 16 15 C 0.52 8.34 8.00 -10.98 -0.09 8.25 16 16 O -0.53 -9.90 16.14 5.56 0.09 -9.81 16 17 N -0.53 -7.15 6.26 31.22 0.20 -6.96 16 18 N -0.52 -6.27 6.21 30.51 0.19 -6.08 16 19 C 0.55 6.79 7.88 -12.37 -0.10 6.70 16 20 O -0.52 -7.62 13.81 5.31 0.07 -7.55 16 21 C -0.12 -1.19 5.88 -104.94 -0.62 -1.81 16 22 C -0.07 -0.53 9.54 -39.19 -0.37 -0.91 16 23 C -0.12 -0.65 10.03 -39.64 -0.40 -1.05 16 24 C -0.08 -0.40 10.04 -39.50 -0.40 -0.80 16 25 C -0.12 -0.80 9.82 -39.60 -0.39 -1.19 16 26 C 0.02 0.16 6.35 -39.07 -0.25 -0.09 16 27 Cl -0.03 -0.31 26.02 -51.86 -1.35 -1.66 16 28 H 0.04 0.63 6.65 -51.93 -0.35 0.29 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.10 2.63 5.94 -51.93 -0.31 2.32 16 32 H 0.04 1.03 8.14 -51.93 -0.42 0.60 16 33 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.33 6.54 6.47 -39.29 -0.25 6.29 16 35 H 0.11 1.98 7.93 -51.93 -0.41 1.57 16 36 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.43 5.34 8.00 -182.60 -1.46 3.88 16 38 H 0.43 4.64 6.03 -182.59 -1.10 3.53 16 39 H 0.14 0.78 6.41 -52.49 -0.34 0.45 16 40 H 0.14 0.41 8.06 -52.49 -0.42 -0.01 16 41 H 0.14 0.31 8.06 -52.49 -0.42 -0.12 16 42 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16 LS Contribution 368.91 15.07 5.56 5.56 Total: -1.00 -32.32 368.91 -10.36 -42.68 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -7.13 Total: 8.98 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -2.95 Total: -2.47 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.37 Total: -51.92 kcal Atomic # 8 Polarization: -17.52 SS G_CDS: 0.16 Total: -17.36 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 17 Polarization: -0.31 SS G_CDS: -1.35 Total: -1.66 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.32 -10.36 -42.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846984424.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.701 kcal (2) G-P(sol) polarization free energy of solvation -32.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds