Wall clock time and date at job start Tue Mar 31 2020 22:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47136 * 2 1 4 4 H 1.09003 * 109.46672 * 305.17967 * 3 2 1 5 5 C 1.50701 * 109.46825 * 185.18528 * 3 2 1 6 6 H 1.07995 * 119.99734 * 239.99447 * 5 3 2 7 7 C 1.37881 * 120.00162 * 59.99980 * 5 3 2 8 8 N 1.31515 * 119.99782 * 180.02562 * 7 5 3 9 9 Si 1.86794 * 119.99919 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.46987 * 269.99849 * 9 7 5 11 11 H 1.48500 * 109.47467 * 29.99949 * 9 7 5 12 12 H 1.48503 * 109.47322 * 150.00273 * 9 7 5 13 13 N 1.46890 * 109.47174 * 65.18218 * 3 2 1 14 14 C 1.46903 * 111.00155 * 205.83118 * 13 3 2 15 15 C 1.50705 * 109.47277 * 174.67186 * 14 13 3 16 16 O 1.21273 * 119.99896 * 359.97438 * 15 14 13 17 17 N 1.34770 * 119.99686 * 180.02562 * 15 14 13 18 18 N 1.40102 * 119.99715 * 179.97438 * 17 15 14 19 19 C 1.34779 * 119.99880 * 180.02562 * 18 17 15 20 20 O 1.21551 * 119.99957 * 359.97438 * 19 18 17 21 21 C 1.47852 * 119.99790 * 180.02562 * 19 18 17 22 22 C 1.39595 * 120.13609 * 359.71681 * 21 19 18 23 23 C 1.37950 * 119.87570 * 179.74234 * 22 21 19 24 24 C 1.38360 * 120.16043 * 0.54023 * 23 22 21 25 25 C 1.38452 * 120.27795 * 359.73806 * 24 23 22 26 26 Cl 1.73595 * 119.94094 * 179.97438 * 25 24 23 27 27 C 1.38104 * 120.11835 * 359.97438 * 25 24 23 28 28 H 1.08997 * 109.47446 * 294.76531 * 1 2 3 29 29 H 1.09000 * 109.46908 * 54.76990 * 1 2 3 30 30 H 1.09001 * 109.47359 * 174.76333 * 1 2 3 31 31 H 1.09003 * 109.47060 * 239.99760 * 2 1 3 32 32 H 1.09005 * 109.46941 * 119.99956 * 2 1 3 33 33 H 0.96997 * 119.99840 * 180.02562 * 8 7 5 34 34 H 1.00910 * 111.00200 * 81.88009 * 13 3 2 35 35 H 1.09007 * 109.46668 * 294.66786 * 14 13 3 36 36 H 1.08995 * 109.46947 * 54.66522 * 14 13 3 37 37 H 0.97004 * 120.00643 * 359.97438 * 17 15 14 38 38 H 0.97003 * 120.00195 * 359.97438 * 18 17 15 39 39 H 1.07993 * 120.06567 * 0.02839 * 22 21 19 40 40 H 1.07999 * 119.91637 * 180.27666 * 23 22 21 41 41 H 1.07996 * 119.86405 * 179.75790 * 24 23 22 42 42 H 1.07996 * 120.07979 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6028 1.9823 -0.8400 5 6 3.5415 1.4443 -0.1284 6 1 4.1491 1.8881 0.6463 7 6 4.1395 0.8796 -1.2350 8 7 5.4499 0.8808 -1.3467 9 14 3.0886 0.1115 -2.5747 10 1 2.8687 -1.3250 -2.2688 11 1 1.7796 0.8100 -2.6386 12 1 3.7819 0.2387 -3.8818 13 7 1.6552 2.0979 1.2570 14 6 1.5566 3.5533 1.0832 15 6 1.0351 4.1766 2.3524 16 8 0.7710 3.4773 3.3073 17 7 0.8612 5.5110 2.4256 18 7 0.3759 6.0904 3.6053 19 6 0.2015 7.4249 3.6784 20 8 0.4658 8.1257 2.7211 21 6 -0.3102 8.0364 4.9235 22 6 -0.6191 7.2337 6.0230 23 6 -1.0912 7.8104 7.1838 24 6 -1.2694 9.1806 7.2567 25 6 -0.9705 9.9823 6.1682 26 17 -1.1981 11.7003 6.2691 27 6 -0.4917 9.4177 5.0024 28 1 -0.3634 0.4305 0.9331 29 1 -0.3633 0.5928 -0.8395 30 1 -0.3634 -1.0234 -0.0938 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 5.8706 0.4838 -2.1254 34 1 2.2991 1.8650 1.9982 35 1 2.5426 3.9597 0.8573 36 1 0.8751 3.7758 0.2623 37 1 1.0721 6.0704 1.6617 38 1 0.1646 5.5311 4.3691 39 1 -0.4845 6.1637 5.9665 40 1 -1.3262 7.1905 8.0364 41 1 -1.6429 9.6266 8.1666 42 1 -0.2583 10.0437 4.1539 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846988049.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:07 Heat of formation + Delta-G solvation = -11.852947 kcal Electronic energy + Delta-G solvation = -25629.001440 eV Core-core repulsion = 21636.453742 eV Total energy + Delta-G solvation = -3992.547698 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.87995 -39.64976 -38.61982 -36.93244 -36.42492 -35.40954 -32.79302 -32.38135 -31.77698 -31.51063 -30.47522 -27.64866 -25.50188 -24.29335 -23.18350 -22.44042 -21.62556 -20.81880 -20.00507 -18.60666 -18.03626 -17.16394 -16.93803 -16.18174 -16.02640 -15.83845 -15.45683 -15.22524 -14.92193 -14.65489 -14.35612 -14.27330 -13.88896 -13.83738 -13.18341 -12.92628 -12.58704 -12.53176 -12.30819 -12.08508 -12.03525 -11.68954 -11.58912 -11.48648 -11.38166 -11.06901 -10.69843 -10.61803 -10.48360 -9.92811 -9.76745 -9.69610 -9.51954 -9.38051 -9.29624 -8.64974 -8.50899 -7.51607 -6.19665 -4.22213 0.14918 0.58436 1.45194 1.71402 2.21045 2.71455 3.20698 3.22214 3.32572 3.34404 3.66504 4.16524 4.18781 4.30870 4.41096 4.47061 4.70959 4.83914 4.96840 5.10564 5.18855 5.22587 5.51558 5.59433 5.64898 5.66519 5.92959 6.02620 6.02866 6.03537 6.23979 6.46011 6.51309 6.62793 6.69144 6.91243 7.01217 7.18699 7.36042 7.45538 7.65186 7.85066 8.21507 8.31796 8.37405 8.81331 9.42774 10.92884 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.026567 B = 0.001821 C = 0.001766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1053.690232 B =15372.027217 C =15851.034059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C 0.185 3.815 4 H 0.035 0.965 5 C -0.552 4.552 6 H 0.074 0.926 7 C 0.074 3.926 8 N -0.895 5.895 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.264 1.264 12 H -0.298 1.298 13 N -0.663 5.663 14 C 0.059 3.941 15 C 0.517 3.483 16 O -0.525 6.525 17 N -0.531 5.531 18 N -0.514 5.514 19 C 0.558 3.442 20 O -0.533 6.533 21 C -0.112 4.112 22 C -0.081 4.081 23 C -0.110 4.110 24 C -0.083 4.083 25 C -0.044 4.044 26 Cl -0.060 7.060 27 C -0.048 4.048 28 H 0.062 0.938 29 H 0.039 0.961 30 H 0.033 0.967 31 H 0.046 0.954 32 H 0.059 0.941 33 H 0.265 0.735 34 H 0.346 0.654 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.432 0.568 38 H 0.430 0.570 39 H 0.136 0.864 40 H 0.143 0.857 41 H 0.140 0.860 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.840 16.855 16.110 27.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.153 4.153 3 C 0.076 3.924 4 H 0.053 0.947 5 C -0.591 4.591 6 H 0.092 0.908 7 C -0.129 4.129 8 N -0.532 5.532 9 Si 0.721 3.279 10 H -0.204 1.204 11 H -0.189 1.189 12 H -0.226 1.226 13 N -0.294 5.294 14 C -0.076 4.076 15 C 0.305 3.695 16 O -0.398 6.398 17 N -0.282 5.282 18 N -0.261 5.261 19 C 0.345 3.655 20 O -0.409 6.409 21 C -0.117 4.117 22 C -0.100 4.100 23 C -0.128 4.128 24 C -0.102 4.102 25 C -0.070 4.070 26 Cl -0.031 7.031 27 C -0.068 4.068 28 H 0.081 0.919 29 H 0.059 0.941 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.164 0.836 35 H 0.090 0.910 36 H 0.117 0.883 37 H 0.275 0.725 38 H 0.274 0.726 39 H 0.154 0.846 40 H 0.161 0.839 41 H 0.158 0.842 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -15.370 16.789 15.903 27.767 hybrid contribution 0.603 -0.089 -0.810 1.014 sum -14.767 16.701 15.092 26.921 Atomic orbital electron populations 1.21734 0.97464 0.99272 1.01612 1.21802 0.93926 0.98981 1.00582 1.19637 0.94496 0.90881 0.87338 0.94727 1.21719 0.90354 1.39773 1.07251 0.90833 1.25010 0.94807 0.95137 0.97974 1.69912 1.08977 1.44660 1.29615 0.86802 0.80550 0.79978 0.80593 1.20383 1.18878 1.22569 1.60490 1.56082 1.03240 1.09578 1.21600 1.01335 0.92377 0.92245 1.21610 0.77261 0.79080 0.91568 1.90682 1.49982 1.60681 1.38467 1.45257 1.67935 1.07104 1.07936 1.44629 1.65539 1.06233 1.09664 1.18151 0.78843 0.80419 0.88110 1.90828 1.51409 1.61017 1.37675 1.19544 1.04577 0.93737 0.93805 1.21517 0.95959 1.00206 0.92334 1.21123 0.99206 0.94215 0.98288 1.21341 0.97601 0.93566 0.97724 1.20818 1.04463 0.85801 0.95960 1.98398 1.95582 1.10757 1.98359 1.21129 0.94784 0.93740 0.97114 0.91914 0.94148 0.94808 0.93569 0.92178 0.92515 0.83635 0.90961 0.88252 0.72529 0.72641 0.84600 0.83926 0.84193 0.83229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.59 9.74 37.16 0.36 -2.23 16 2 C -0.11 -2.43 5.11 -26.73 -0.14 -2.57 16 3 C 0.19 4.07 1.57 -68.87 -0.11 3.96 16 4 H 0.03 0.78 6.76 -51.93 -0.35 0.43 16 5 C -0.55 -14.48 9.05 -34.44 -0.31 -14.79 16 6 H 0.07 2.09 7.97 -52.49 -0.42 1.68 16 7 C 0.07 2.04 5.45 -17.82 -0.10 1.95 16 8 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 9 Si 0.89 21.20 24.41 -169.99 -4.15 17.05 16 10 H -0.28 -6.50 6.83 56.52 0.39 -6.11 16 11 H -0.26 -5.97 6.53 56.52 0.37 -5.60 16 12 H -0.30 -7.16 7.11 56.52 0.40 -6.76 16 13 N -0.66 -12.73 5.34 -109.22 -0.58 -13.32 16 14 C 0.06 0.94 5.99 -4.97 -0.03 0.91 16 15 C 0.52 7.71 8.00 -10.99 -0.09 7.62 16 16 O -0.53 -9.18 16.16 5.56 0.09 -9.09 16 17 N -0.53 -6.62 6.26 31.22 0.20 -6.42 16 18 N -0.51 -5.72 6.21 30.53 0.19 -5.53 16 19 C 0.56 6.31 7.89 -12.33 -0.10 6.21 16 20 O -0.53 -7.56 16.19 5.32 0.09 -7.47 16 21 C -0.11 -0.98 5.87 -104.97 -0.62 -1.60 16 22 C -0.08 -0.52 9.54 -39.18 -0.37 -0.90 16 23 C -0.11 -0.56 10.03 -39.64 -0.40 -0.96 16 24 C -0.08 -0.47 9.82 -39.46 -0.39 -0.85 16 25 C -0.04 -0.32 6.31 -39.55 -0.25 -0.57 16 26 Cl -0.06 -0.43 28.95 -51.86 -1.50 -1.94 16 27 C -0.05 -0.41 9.38 -39.15 -0.37 -0.78 16 28 H 0.06 1.11 7.90 -51.93 -0.41 0.70 16 29 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 1.04 3.21 -51.93 -0.17 0.87 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.27 7.37 8.31 -40.82 -0.34 7.04 16 34 H 0.35 6.99 8.30 -39.29 -0.33 6.66 16 35 H 0.07 1.17 8.12 -51.93 -0.42 0.75 16 36 H 0.10 1.43 7.92 -51.93 -0.41 1.02 16 37 H 0.43 4.93 8.00 -182.59 -1.46 3.47 16 38 H 0.43 4.19 6.03 -182.59 -1.10 3.09 16 39 H 0.14 0.66 6.40 -52.49 -0.34 0.32 16 40 H 0.14 0.36 8.06 -52.49 -0.42 -0.06 16 41 H 0.14 0.50 8.06 -52.49 -0.42 0.07 16 42 H 0.15 1.35 7.65 -52.49 -0.40 0.95 16 LS Contribution 368.80 15.07 5.56 5.56 Total: -1.00 -32.27 368.80 -9.34 -41.62 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -7.10 Total: 9.75 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -2.90 Total: -4.59 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: 0.58 Total: -50.89 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: 0.18 Total: -16.56 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -4.15 Total: 17.05 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.50 Total: -1.94 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -32.27 -9.34 -41.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846988049.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.764 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds