Wall clock time and date at job start Tue Mar 31 2020 22:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47129 * 2 1 4 4 H 1.08995 * 109.46771 * 54.86634 * 3 2 1 5 5 C 1.50699 * 109.46684 * 174.86904 * 3 2 1 6 6 H 1.08006 * 120.00017 * 120.00159 * 5 3 2 7 7 C 1.37880 * 120.00041 * 299.99447 * 5 3 2 8 8 N 1.31515 * 120.00113 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 120.00023 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46827 * 60.00255 * 9 7 5 11 11 H 1.48503 * 109.47108 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47107 * 300.00341 * 9 7 5 13 13 N 1.46897 * 109.46794 * 294.86580 * 3 2 1 14 14 C 1.46903 * 110.99675 * 154.16648 * 13 3 2 15 15 C 1.50696 * 109.47188 * 185.23208 * 14 13 3 16 16 O 1.21281 * 120.00296 * 0.02562 * 15 14 13 17 17 N 1.34780 * 120.00313 * 180.02562 * 15 14 13 18 18 N 1.40099 * 120.00686 * 180.02562 * 17 15 14 19 19 C 1.34768 * 120.00347 * 180.02562 * 18 17 15 20 20 O 1.21559 * 120.00052 * 359.97438 * 19 18 17 21 21 C 1.47854 * 120.00080 * 180.02562 * 19 18 17 22 22 C 1.39591 * 120.13569 * 359.71994 * 21 19 18 23 23 C 1.37945 * 119.87692 * 179.74638 * 22 21 19 24 24 C 1.38357 * 120.15881 * 0.53474 * 23 22 21 25 25 C 1.38449 * 120.28182 * 359.73759 * 24 23 22 26 26 Cl 1.73598 * 119.94209 * 179.97438 * 25 24 23 27 27 C 1.38098 * 120.11605 * 359.97438 * 25 24 23 28 28 H 1.09004 * 109.46557 * 295.45510 * 1 2 3 29 29 H 1.08998 * 109.47669 * 55.45060 * 1 2 3 30 30 H 1.08999 * 109.47301 * 175.46186 * 1 2 3 31 31 H 1.08998 * 109.46361 * 240.00229 * 2 1 3 32 32 H 1.08996 * 109.46995 * 120.00334 * 2 1 3 33 33 H 0.96990 * 120.00199 * 179.97438 * 8 7 5 34 34 H 1.00906 * 111.00395 * 278.11698 * 13 3 2 35 35 H 1.09001 * 109.47166 * 305.23045 * 14 13 3 36 36 H 1.09007 * 109.47143 * 65.23403 * 14 13 3 37 37 H 0.97003 * 119.99794 * 359.97438 * 17 15 14 38 38 H 0.96999 * 119.99120 * 359.97438 * 18 17 15 39 39 H 1.08000 * 120.06187 * 0.02562 * 22 21 19 40 40 H 1.07996 * 119.91632 * 180.27289 * 23 22 21 41 41 H 1.08003 * 119.86107 * 179.76551 * 24 23 22 42 42 H 1.08000 * 120.08231 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6036 1.9821 0.8404 5 6 3.5417 1.4443 0.1271 6 1 4.1487 1.8883 -0.6481 7 6 4.1406 0.8793 1.2330 8 7 3.4015 0.3383 2.1768 9 14 6.0019 0.8821 1.3908 10 1 6.4965 2.2824 1.3911 11 1 6.3920 0.2186 2.6608 12 1 6.5969 0.1472 0.2458 13 7 1.6542 2.0982 -1.2566 14 6 1.5557 3.5536 -1.0823 15 6 1.0354 4.1774 -2.3515 16 8 0.7720 3.4786 -3.3071 17 7 0.8627 5.5121 -2.4249 18 7 0.3785 6.0921 -3.6046 19 6 0.2063 7.4268 -3.6781 20 8 0.4708 8.1273 -2.7205 21 6 -0.3053 8.0388 -4.9230 22 6 -0.6053 7.2375 -6.0260 23 6 -1.0873 7.8136 -7.1830 24 6 -1.2632 9.1840 -7.2562 25 6 -0.9624 9.9855 -6.1681 26 17 -1.1859 11.7041 -6.2698 27 6 -0.4848 9.4204 -5.0021 28 1 -0.3632 0.4417 0.9280 29 1 -0.3634 0.5828 -0.8464 30 1 -0.3634 -1.0244 -0.0813 31 1 1.8932 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 3.8229 -0.0595 2.9545 34 1 2.2975 1.8656 -1.9983 35 1 0.8734 3.7759 -0.2619 36 1 2.5415 3.9598 -0.8553 37 1 1.0730 6.0711 -1.6605 38 1 0.1679 5.5331 -4.3688 39 1 -0.4647 6.1681 -5.9720 40 1 -1.3238 7.1938 -8.0352 41 1 -1.6373 9.6303 -8.1657 42 1 -0.2507 10.0461 -4.1536 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846988050.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:58:09 Heat of formation + Delta-G solvation = -39.809252 kcal Electronic energy + Delta-G solvation = -25569.630947 eV Core-core repulsion = 21575.870973 eV Total energy + Delta-G solvation = -3993.759974 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.76478 -40.60657 -39.46283 -37.82684 -37.48333 -36.50541 -34.41391 -33.49903 -32.84440 -32.08927 -31.29403 -28.95823 -26.78126 -25.18456 -24.29161 -23.68914 -22.59562 -21.74726 -21.43875 -19.45204 -19.03719 -18.73152 -17.82648 -16.99896 -16.90440 -16.71795 -16.65887 -16.20523 -16.06670 -15.83184 -15.37719 -15.16378 -14.92257 -14.81289 -14.48521 -14.30328 -13.77653 -13.57862 -13.06688 -13.05549 -13.02489 -12.79424 -12.62894 -12.60727 -12.51046 -12.43486 -12.07705 -12.05512 -11.61471 -11.52881 -11.48326 -11.11527 -10.93905 -10.43504 -10.25624 -9.91934 -9.53077 -9.09698 -8.04234 -6.25830 -0.44392 0.06352 0.58425 1.06074 1.31372 1.41864 1.43708 1.50012 1.67748 2.42030 2.59189 2.76169 3.16582 3.31976 3.71668 3.74518 3.85551 3.89963 3.98710 4.21137 4.38611 4.41919 4.62613 4.66005 4.75476 4.80558 4.95671 4.97151 5.09983 5.18047 5.18415 5.42713 5.45513 5.50125 5.53580 5.61481 5.66924 5.78564 6.08131 6.17498 6.29541 6.39786 6.68533 6.75196 6.97778 7.20946 7.45502 8.92416 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021753 B = 0.001834 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.891440 B =15260.367709 C =15914.443462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.103 4.103 3 C 0.223 3.777 4 H 0.014 0.986 5 C -0.561 4.561 6 H 0.053 0.947 7 C 0.023 3.977 8 N -0.907 5.907 9 Si 0.948 3.052 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.669 5.669 14 C 0.060 3.940 15 C 0.527 3.473 16 O -0.552 6.552 17 N -0.523 5.523 18 N -0.509 5.509 19 C 0.561 3.439 20 O -0.568 6.568 21 C -0.129 4.129 22 C -0.077 4.077 23 C -0.102 4.102 24 C -0.075 4.075 25 C -0.053 4.053 26 Cl -0.063 7.063 27 C -0.061 4.061 28 H 0.034 0.966 29 H 0.055 0.945 30 H 0.043 0.957 31 H 0.025 0.975 32 H 0.064 0.936 33 H 0.262 0.738 34 H 0.335 0.665 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.438 0.562 38 H 0.438 0.562 39 H 0.152 0.848 40 H 0.177 0.823 41 H 0.165 0.835 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.481 18.181 -19.414 28.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.141 4.141 3 C 0.115 3.885 4 H 0.032 0.968 5 C -0.601 4.601 6 H 0.071 0.929 7 C -0.177 4.177 8 N -0.546 5.546 9 Si 0.775 3.225 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.299 5.299 14 C -0.074 4.074 15 C 0.315 3.685 16 O -0.427 6.427 17 N -0.273 5.273 18 N -0.257 5.257 19 C 0.349 3.651 20 O -0.447 6.447 21 C -0.133 4.133 22 C -0.096 4.096 23 C -0.119 4.119 24 C -0.093 4.093 25 C -0.080 4.080 26 Cl -0.034 7.034 27 C -0.081 4.081 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.062 0.938 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.152 0.848 35 H 0.127 0.873 36 H 0.088 0.912 37 H 0.281 0.719 38 H 0.282 0.718 39 H 0.170 0.830 40 H 0.194 0.806 41 H 0.183 0.817 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -11.169 18.090 -19.135 28.603 hybrid contribution 2.099 0.335 0.771 2.261 sum -9.070 18.425 -18.364 27.550 Atomic orbital electron populations 1.21588 0.96559 0.99935 1.00444 1.21368 0.94305 0.98385 1.00080 1.18984 0.91840 0.91673 0.85994 0.96780 1.22118 0.93863 1.38560 1.05520 0.92916 1.25612 1.01806 0.94747 0.95574 1.69978 1.36388 1.38505 1.09727 0.85771 0.81328 0.78252 0.77191 1.19847 1.21147 1.20094 1.60522 1.55557 1.04908 1.08926 1.21600 1.01583 0.90941 0.93306 1.21234 0.77033 0.79552 0.90713 1.90668 1.51436 1.61494 1.39094 1.45038 1.67036 1.06520 1.08749 1.44719 1.65486 1.06350 1.09152 1.18608 0.77885 0.79992 0.88591 1.90806 1.53011 1.61727 1.39130 1.19389 1.06567 0.93939 0.93449 1.21758 0.95071 1.00864 0.91914 1.21517 0.97521 0.94256 0.98636 1.21709 0.96045 0.93769 0.97796 1.20908 1.04999 0.85879 0.96174 1.98395 1.95669 1.11038 1.98336 1.21076 0.95830 0.93746 0.97471 0.94654 0.92639 0.93758 0.95566 0.91720 0.92835 0.84816 0.87256 0.91222 0.71900 0.71752 0.82997 0.80552 0.81707 0.84660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.10 9.85 71.98 0.71 -4.40 16 2 C -0.10 -4.82 5.45 30.60 0.17 -4.65 16 3 C 0.22 10.55 1.97 44.17 0.09 10.64 16 4 H 0.01 0.73 7.70 -2.39 -0.02 0.71 16 5 C -0.56 -28.88 8.47 25.60 0.22 -28.66 16 6 H 0.05 2.67 7.73 -2.91 -0.02 2.64 16 7 C 0.02 1.22 5.29 84.66 0.45 1.67 16 8 N -0.91 -49.93 11.29 21.45 0.24 -49.69 16 9 Si 0.95 42.01 29.54 68.60 2.03 44.04 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.29 -12.55 7.11 99.48 0.71 -11.85 16 12 H -0.28 -12.06 7.11 99.48 0.71 -11.35 16 13 N -0.67 -26.86 5.17 -499.46 -2.58 -29.44 16 14 C 0.06 1.97 5.99 85.56 0.51 2.48 16 15 C 0.53 15.83 8.00 87.66 0.70 16.53 16 16 O -0.55 -19.37 16.15 -3.03 -0.05 -19.42 16 17 N -0.52 -13.05 6.26 -173.53 -1.09 -14.13 16 18 N -0.51 -11.16 6.21 -175.60 -1.09 -12.25 16 19 C 0.56 12.73 7.89 86.79 0.68 13.42 16 20 O -0.57 -16.60 16.19 -3.90 -0.06 -16.66 16 21 C -0.13 -2.20 5.87 -20.09 -0.12 -2.32 16 22 C -0.08 -0.83 9.54 22.53 0.21 -0.62 16 23 C -0.10 -0.69 10.03 22.23 0.22 -0.47 16 24 C -0.07 -0.63 9.82 22.35 0.22 -0.41 16 25 C -0.05 -0.72 6.31 22.29 0.14 -0.58 16 26 Cl -0.06 -0.87 28.95 -2.72 -0.08 -0.95 16 27 C -0.06 -1.06 9.38 22.55 0.21 -0.85 16 28 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 29 H 0.05 2.16 7.64 -2.39 -0.02 2.14 16 30 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.06 3.41 5.95 -2.39 -0.01 3.39 16 33 H 0.26 13.87 8.31 -92.72 -0.77 13.10 16 34 H 0.33 13.90 8.29 -89.69 -0.74 13.16 16 35 H 0.11 3.36 7.92 -2.39 -0.02 3.34 16 36 H 0.07 2.27 8.11 -2.38 -0.02 2.25 16 37 H 0.44 10.09 8.00 -213.32 -1.71 8.38 16 38 H 0.44 8.14 6.03 -213.32 -1.29 6.85 16 39 H 0.15 1.10 6.40 -2.91 -0.02 1.08 16 40 H 0.18 0.06 8.06 -2.91 -0.02 0.03 16 41 H 0.17 0.57 8.06 -2.91 -0.02 0.55 16 42 H 0.14 2.63 7.65 -2.91 -0.02 2.61 16 Total: -1.00 -65.74 375.24 -0.91 -66.65 By element: Atomic # 1 Polarization: 32.72 SS G_CDS: -2.65 Total: 30.07 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: 4.42 Total: 1.79 kcal Atomic # 7 Polarization: -101.00 SS G_CDS: -4.51 Total: -105.52 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -0.11 Total: -36.08 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.95 kcal Total: -65.74 -0.91 -66.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846988050.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.840 kcal (2) G-P(sol) polarization free energy of solvation -65.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds