Wall clock time and date at job start Tue Mar 31 2020 22:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99389 * 2 1 4 4 H 1.48497 * 109.46911 * 239.99893 * 3 2 1 5 5 H 1.48501 * 109.47278 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46934 * 120.00128 * 3 2 1 7 7 C 1.37875 * 120.00645 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00430 * 186.12201 * 7 2 1 9 9 C 1.50701 * 119.99625 * 6.38641 * 7 2 1 10 10 C 1.52991 * 115.55544 * 274.89404 * 9 7 2 11 11 O 1.45198 * 109.47075 * 294.88682 * 10 9 7 12 12 C 1.34228 * 117.00205 * 179.97438 * 11 10 9 13 13 O 1.20835 * 120.00031 * 359.97438 * 12 11 10 14 14 C 1.50700 * 120.00368 * 180.02562 * 12 11 10 15 15 N 1.46503 * 109.47110 * 180.02562 * 14 12 11 16 16 C 1.34782 * 119.99803 * 179.97438 * 15 14 12 17 17 O 1.21585 * 119.99525 * 359.97438 * 16 15 14 18 18 C 1.47568 * 120.00133 * 179.97438 * 16 15 14 19 19 C 1.39734 * 120.13826 * 359.72056 * 18 16 15 20 20 C 1.37738 * 119.90415 * 179.74625 * 19 18 16 21 21 C 1.38761 * 120.18847 * 0.53280 * 20 19 18 22 22 F 1.35102 * 119.85616 * 179.76042 * 21 20 19 23 23 C 1.38495 * 120.28766 * 359.74546 * 21 20 19 24 24 C 1.38198 * 120.08968 * 359.97422 * 23 21 20 25 25 F 1.35106 * 120.09494 * 180.02562 * 24 23 21 26 26 C 1.52999 * 117.49233 * 129.22099 * 9 7 2 27 27 C 1.53002 * 117.49529 * 60.56682 * 9 7 2 28 28 H 0.96998 * 120.00543 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47413 * 54.88486 * 10 9 7 30 30 H 1.09000 * 109.47103 * 174.88713 * 10 9 7 31 31 H 1.09004 * 109.46603 * 299.99890 * 14 12 11 32 32 H 1.08998 * 109.47477 * 59.99811 * 14 12 11 33 33 H 0.96993 * 120.00320 * 359.97438 * 15 14 12 34 34 H 1.08001 * 120.04939 * 0.02773 * 19 18 16 35 35 H 1.07997 * 119.90816 * 180.27781 * 20 19 18 36 36 H 1.08001 * 119.95774 * 179.97438 * 23 21 20 37 37 H 1.08998 * 117.50651 * 0.02562 * 26 9 7 38 38 H 1.09007 * 117.49575 * 145.02284 * 26 9 7 39 39 H 1.09004 * 117.50100 * 214.97609 * 27 9 7 40 40 H 1.09000 * 117.49932 * 359.97275 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6966 1.2126 7 6 2.0047 -1.1940 -0.0005 8 1 3.0800 -1.1966 0.0992 9 6 1.2582 -2.4950 -0.1463 10 6 0.6972 -3.0828 1.1500 11 8 1.7930 -3.4498 2.0290 12 6 1.4687 -3.9839 3.2170 13 8 0.3075 -4.1391 3.5128 14 6 2.5527 -4.3888 4.1824 15 7 1.9449 -4.9409 5.3957 16 6 2.7271 -5.3725 6.4049 17 8 3.9372 -5.3040 6.3080 18 6 2.1149 -5.9280 7.6273 19 6 0.7245 -6.0027 7.7439 20 6 0.1583 -6.5270 8.8849 21 6 0.9645 -6.9710 9.9233 22 9 0.4019 -7.4796 11.0413 23 6 2.3434 -6.8954 9.8184 24 6 2.9240 -6.3768 8.6766 25 9 4.2692 -6.3035 8.5739 26 6 1.7506 -3.4762 -1.2120 27 6 0.4464 -2.7040 -1.4262 28 1 -0.4851 0.8400 0.0004 29 1 0.0687 -2.3413 1.6431 30 1 0.1035 -3.9677 0.9206 31 1 3.1884 -5.1435 3.7191 32 1 3.1534 -3.5168 4.4410 33 1 0.9796 -4.9958 5.4727 34 1 0.0947 -5.6540 6.9388 35 1 -0.9163 -6.5888 8.9732 36 1 2.9658 -7.2422 10.6300 37 1 2.6146 -3.1810 -1.8073 38 1 1.6745 -4.5406 -0.9896 39 1 -0.4872 -3.2607 -1.3448 40 1 0.4519 -1.9004 -2.1626 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849642903.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:31 Heat of formation + Delta-G solvation = -171.221521 kcal Electronic energy + Delta-G solvation = -27842.384095 eV Core-core repulsion = 23258.836226 eV Total energy + Delta-G solvation = -4583.547869 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -50.16376 -50.11214 -41.77982 -40.98153 -39.27869 -38.63291 -37.12397 -35.80736 -34.02409 -32.60357 -31.78697 -29.94325 -28.19675 -27.16528 -25.05668 -24.14559 -23.00611 -22.21627 -21.86387 -21.20142 -19.83283 -19.16056 -18.65374 -18.36576 -18.01593 -17.69268 -17.20226 -17.14852 -16.79549 -16.64335 -16.59690 -16.49070 -16.12405 -15.86462 -15.55149 -15.45705 -14.95431 -14.65261 -14.40112 -14.21789 -13.76756 -13.59652 -13.56489 -13.51664 -13.04816 -12.92185 -12.80844 -12.60862 -12.42630 -12.08616 -11.81446 -11.71188 -11.44620 -11.35081 -10.78420 -10.52271 -10.48872 -10.28329 -10.08740 -9.93373 -8.14526 -6.25071 -0.67006 -0.13807 1.05922 1.28276 1.43387 1.43890 1.47008 1.51166 2.12871 2.36563 2.42271 2.64200 3.14262 3.14751 3.31568 3.38780 3.43633 3.68995 3.74198 3.95907 4.13104 4.18951 4.28272 4.39705 4.47666 4.53142 4.56285 4.65313 4.73181 4.78604 4.85752 4.87414 4.98236 4.99326 5.20090 5.43378 5.52241 5.57835 5.63914 5.75143 6.19960 6.35424 6.64459 6.80114 6.89698 7.43821 8.93915 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018410 B = 0.002095 C = 0.002062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.539151 B =13361.903477 C =13577.131801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 0.948 3.052 4 H -0.270 1.270 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.506 4.506 8 H 0.055 0.945 9 C 0.002 3.998 10 C 0.129 3.871 11 O -0.342 6.342 12 C 0.455 3.545 13 O -0.535 6.535 14 C 0.135 3.865 15 N -0.706 5.706 16 C 0.565 3.435 17 O -0.560 6.560 18 C -0.197 4.197 19 C -0.017 4.017 20 C -0.157 4.157 21 C 0.160 3.840 22 F -0.125 7.125 23 C -0.198 4.198 24 C 0.172 3.828 25 F -0.124 7.124 26 C -0.178 4.178 27 C -0.146 4.146 28 H 0.261 0.739 29 H 0.046 0.954 30 H 0.057 0.943 31 H 0.130 0.870 32 H 0.120 0.880 33 H 0.419 0.581 34 H 0.170 0.830 35 H 0.181 0.819 36 H 0.172 0.828 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.649 -15.004 18.377 23.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.175 4.175 3 Si 0.774 3.226 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.543 4.543 8 H 0.073 0.927 9 C 0.002 3.998 10 C 0.056 3.944 11 O -0.256 6.256 12 C 0.299 3.701 13 O -0.426 6.426 14 C 0.010 3.990 15 N -0.363 5.363 16 C 0.353 3.647 17 O -0.439 6.439 18 C -0.201 4.201 19 C -0.036 4.036 20 C -0.175 4.175 21 C 0.140 3.860 22 F -0.103 7.103 23 C -0.217 4.217 24 C 0.151 3.849 25 F -0.102 7.102 26 C -0.215 4.215 27 C -0.184 4.184 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.075 0.925 31 H 0.147 0.853 32 H 0.138 0.862 33 H 0.259 0.741 34 H 0.188 0.812 35 H 0.198 0.802 36 H 0.189 0.811 37 H 0.102 0.898 38 H 0.112 0.888 39 H 0.099 0.901 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.281 -14.849 18.337 23.597 hybrid contribution -0.082 1.095 0.009 1.098 sum -0.363 -13.754 18.345 22.932 Atomic orbital electron populations 1.70073 1.06980 1.27387 1.50070 1.25667 0.95589 1.01937 0.94318 0.85767 0.78543 0.79395 0.78892 1.19556 1.21068 1.19849 1.20616 0.92962 0.89908 1.50863 0.92727 1.18891 1.00568 0.94688 0.85691 1.22593 0.85657 0.96744 0.89422 1.86505 1.41273 1.71084 1.26745 1.23819 0.89998 0.73857 0.82379 1.90593 1.22143 1.52994 1.76910 1.20654 0.92045 1.02850 0.83412 1.45528 1.11750 1.63399 1.15655 1.18109 0.86091 0.77524 0.82952 1.90866 1.14978 1.56686 1.81360 1.19954 0.95417 1.09672 0.95056 1.21356 0.91372 0.92701 0.98125 1.21476 1.02920 1.01088 0.92045 1.17626 0.90303 0.94583 0.83509 1.91579 1.85116 1.84024 1.49599 1.21138 0.94947 1.06277 0.99364 1.17478 0.77169 0.96592 0.93635 1.91596 1.29192 1.93307 1.96141 1.23027 0.97478 0.96516 1.04521 1.22495 0.93949 1.01330 1.00631 0.92960 0.93543 0.92516 0.85276 0.86186 0.74106 0.81231 0.80151 0.81054 0.89833 0.88809 0.90116 0.91334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.31 12.93 21.45 0.28 -50.03 16 2 C 0.03 1.36 5.39 84.65 0.46 1.81 16 3 Si 0.95 42.46 29.54 68.60 2.03 44.49 16 4 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 5 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.51 -26.84 8.77 25.60 0.22 -26.61 16 8 H 0.05 2.91 7.82 -2.91 -0.02 2.89 16 9 C 0.00 0.10 1.61 -52.93 -0.08 0.01 16 10 C 0.13 5.72 5.29 71.98 0.38 6.10 16 11 O -0.34 -13.54 10.16 -51.40 -0.52 -14.06 16 12 C 0.46 14.83 8.03 71.24 0.57 15.40 16 13 O -0.54 -18.76 15.42 21.94 0.34 -18.42 16 14 C 0.13 3.37 6.27 85.63 0.54 3.91 16 15 N -0.71 -15.57 5.48 -469.96 -2.57 -18.14 16 16 C 0.56 13.72 7.76 86.70 0.67 14.39 16 17 O -0.56 -17.83 15.34 -3.98 -0.06 -17.89 16 18 C -0.20 -3.66 5.88 -20.05 -0.12 -3.78 16 19 C -0.02 -0.20 9.53 22.51 0.21 0.02 16 20 C -0.16 -1.40 10.01 22.28 0.22 -1.18 16 21 C 0.16 1.85 7.30 22.46 0.16 2.01 16 22 F -0.12 -1.53 17.26 44.97 0.78 -0.75 16 23 C -0.20 -2.67 9.99 22.32 0.22 -2.45 16 24 C 0.17 3.30 7.28 22.66 0.17 3.47 16 25 F -0.12 -3.09 15.55 44.97 0.70 -2.39 16 26 C -0.18 -7.14 9.96 30.62 0.30 -6.84 16 27 C -0.15 -6.44 9.43 30.62 0.29 -6.15 16 28 H 0.26 13.93 8.31 -92.71 -0.77 13.16 16 29 H 0.05 2.32 8.13 -2.39 -0.02 2.30 16 30 H 0.06 2.28 8.09 -2.39 -0.02 2.27 16 31 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 33 H 0.42 7.87 5.47 -92.71 -0.51 7.37 16 34 H 0.17 1.28 6.40 -2.91 -0.02 1.26 16 35 H 0.18 0.61 8.06 -2.91 -0.02 0.58 16 36 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 37 H 0.08 3.30 8.14 -2.39 -0.02 3.28 16 38 H 0.09 3.24 8.14 -2.38 -0.02 3.22 16 39 H 0.08 3.25 8.14 -2.38 -0.02 3.23 16 40 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 Total: -1.00 -66.91 364.66 5.78 -61.12 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.60 Total: 15.96 kcal Atomic # 6 Polarization: -4.11 SS G_CDS: 4.22 Total: 0.11 kcal Atomic # 7 Polarization: -65.88 SS G_CDS: -2.30 Total: -68.17 kcal Atomic # 8 Polarization: -50.12 SS G_CDS: -0.24 Total: -50.37 kcal Atomic # 9 Polarization: -4.62 SS G_CDS: 1.48 Total: -3.15 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 2.03 Total: 44.49 kcal Total: -66.91 5.78 -61.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849642903.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.097 kcal (2) G-P(sol) polarization free energy of solvation -66.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds