Wall clock time and date at job start Tue Mar 31 2020 22:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00296 * 2 1 4 4 H 1.48497 * 109.47631 * 270.00208 * 3 2 1 5 5 H 1.48504 * 109.47130 * 30.00510 * 3 2 1 6 6 H 1.48510 * 109.47010 * 150.00055 * 3 2 1 7 7 C 1.37882 * 119.99444 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99698 * 173.70134 * 7 2 1 9 9 C 1.50693 * 120.00144 * 353.69894 * 7 2 1 10 10 C 1.52996 * 115.54933 * 86.11464 * 9 7 2 11 11 O 1.45199 * 109.47797 * 65.10347 * 10 9 7 12 12 C 1.34222 * 117.00242 * 179.97438 * 11 10 9 13 13 O 1.20826 * 120.00155 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00031 * 179.97438 * 12 11 10 15 15 N 1.46503 * 109.47361 * 180.02562 * 14 12 11 16 16 C 1.34770 * 120.00138 * 180.02562 * 15 14 12 17 17 O 1.21553 * 119.99952 * 0.02562 * 16 15 14 18 18 C 1.47857 * 120.00124 * 180.02562 * 16 15 14 19 19 C 1.39552 * 120.12256 * 179.97438 * 18 16 15 20 20 C 1.38198 * 119.87931 * 179.97438 * 19 18 16 21 21 F 1.35093 * 119.94169 * 180.02562 * 20 19 18 22 22 C 1.38532 * 120.11877 * 0.02562 * 20 19 18 23 23 C 1.38528 * 120.24673 * 359.97438 * 22 20 19 24 24 F 1.35097 * 119.94020 * 179.97438 * 23 22 20 25 25 C 1.38200 * 120.12114 * 0.02562 * 23 22 20 26 26 C 1.53000 * 117.49730 * 231.77679 * 9 7 2 27 27 C 1.52997 * 117.49983 * 300.44003 * 9 7 2 28 28 H 0.97006 * 119.99332 * 359.97438 * 1 2 3 29 29 H 1.09008 * 109.47024 * 305.09854 * 10 9 7 30 30 H 1.09000 * 109.47242 * 185.10999 * 10 9 7 31 31 H 1.09003 * 109.46862 * 60.00600 * 14 12 11 32 32 H 1.08997 * 109.47243 * 300.00830 * 14 12 11 33 33 H 0.96999 * 119.99469 * 0.02562 * 15 14 12 34 34 H 1.08004 * 120.05745 * 359.70744 * 19 18 16 35 35 H 1.08002 * 119.87374 * 179.97438 * 22 20 19 36 36 H 1.08003 * 120.06474 * 179.97438 * 25 23 22 37 37 H 1.09000 * 117.49801 * 215.00284 * 26 9 7 38 38 H 1.08996 * 117.49805 * 0.02738 * 26 9 7 39 39 H 1.09004 * 117.49817 * 359.97438 * 27 9 7 40 40 H 1.09000 * 117.49968 * 144.97744 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0465 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5469 1.4400 0.7001 7 6 2.0045 -1.1942 -0.0005 8 1 3.0796 -1.1970 -0.1032 9 6 1.2577 -2.4953 0.1421 10 6 0.7191 -3.0930 -1.1592 11 8 1.8297 -3.4642 -2.0176 12 6 1.5258 -4.0080 -3.2065 13 8 0.3699 -4.1681 -3.5198 14 6 2.6262 -4.4178 -4.1511 15 7 2.0393 -4.9793 -5.3704 16 6 2.8386 -5.4165 -6.3635 17 8 4.0465 -5.3454 -6.2474 18 6 2.2463 -5.9827 -7.5942 19 6 3.0715 -6.4357 -8.6244 20 6 2.5126 -6.9645 -9.7723 21 9 3.3103 -7.4038 -10.7701 22 6 1.1356 -7.0448 -9.9017 23 6 0.3116 -6.5967 -8.8823 24 9 -1.0303 -6.6775 -9.0152 25 6 0.8599 -6.0661 -7.7300 26 6 1.7340 -3.4683 1.2225 27 6 0.4252 -2.6967 1.4099 28 1 -0.4849 0.8402 0.0004 29 1 0.0974 -2.3560 -1.6676 30 1 0.1230 -3.9772 -0.9335 31 1 3.2558 -5.1675 -3.6720 32 1 3.2291 -3.5464 -4.4064 33 1 1.0754 -5.0364 -5.4628 34 1 4.1451 -6.3691 -8.5264 35 1 0.7030 -7.4584 -10.8007 36 1 0.2166 -5.7166 -6.9359 37 1 1.6635 -4.5343 1.0062 38 1 2.5871 -3.1672 1.8303 39 1 0.4180 -1.8883 2.1410 40 1 -0.5064 -3.2548 1.3168 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000849712908.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:34 Heat of formation + Delta-G solvation = -155.554181 kcal Electronic energy + Delta-G solvation = -27681.045599 eV Core-core repulsion = 23098.177116 eV Total energy + Delta-G solvation = -4582.868482 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.51230 -49.48921 -40.77061 -39.91499 -38.43543 -37.01055 -35.59284 -34.79827 -32.03695 -31.99563 -30.92885 -28.88324 -26.67753 -25.33750 -24.56748 -23.30075 -21.39306 -21.13367 -20.73577 -19.40124 -19.22904 -17.79347 -17.28691 -17.13513 -16.88701 -16.57478 -16.39850 -16.34389 -16.11802 -15.79444 -15.69270 -15.25719 -15.15605 -14.81619 -14.65356 -14.10095 -13.78298 -13.47014 -13.25104 -12.95373 -12.55997 -12.40050 -12.37630 -12.17151 -12.11105 -11.70664 -11.03311 -10.95381 -10.61882 -10.52500 -10.41748 -10.30226 -10.05213 -9.75661 -9.68020 -9.47991 -9.36151 -8.91353 -8.53904 -8.30692 -6.14393 -4.19974 -0.01551 0.37999 2.17068 2.34343 2.41118 3.06776 3.17042 3.24626 3.32011 3.34453 3.35674 3.73670 3.97509 4.18180 4.33482 4.39026 4.42504 4.83074 4.91616 5.15527 5.17249 5.17912 5.27102 5.30478 5.32091 5.40043 5.49003 5.84578 5.86578 6.10576 6.12822 6.21627 6.39413 6.52265 6.65158 6.95213 7.00553 7.05234 7.26331 7.37367 7.71262 7.79643 8.07504 8.30912 8.82456 9.46631 10.94841 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017654 B = 0.002084 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.689914 B =13429.741878 C =13691.483335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.881 5.881 2 C 0.069 3.931 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.492 4.492 8 H 0.064 0.936 9 C 0.035 3.965 10 C 0.116 3.884 11 O -0.328 6.328 12 C 0.452 3.548 13 O -0.522 6.522 14 C 0.125 3.875 15 N -0.711 5.711 16 C 0.565 3.435 17 O -0.523 6.523 18 C -0.071 4.071 19 C -0.104 4.104 20 C 0.126 3.874 21 F -0.125 7.125 22 C -0.168 4.168 23 C 0.129 3.871 24 F -0.124 7.124 25 C -0.131 4.131 26 C -0.205 4.205 27 C -0.143 4.143 28 H 0.262 0.738 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.115 0.885 32 H 0.117 0.883 33 H 0.413 0.587 34 H 0.159 0.841 35 H 0.154 0.846 36 H 0.151 0.849 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.663 -13.993 -17.146 22.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.518 5.518 2 C -0.135 4.135 3 Si 0.720 3.280 4 H -0.206 1.206 5 H -0.211 1.211 6 H -0.197 1.197 7 C -0.529 4.529 8 H 0.082 0.918 9 C 0.035 3.965 10 C 0.043 3.957 11 O -0.242 6.242 12 C 0.295 3.705 13 O -0.413 6.413 14 C 0.000 4.000 15 N -0.368 5.368 16 C 0.351 3.649 17 O -0.399 6.399 18 C -0.075 4.075 19 C -0.124 4.124 20 C 0.106 3.894 21 F -0.104 7.104 22 C -0.188 4.188 23 C 0.109 3.891 24 F -0.103 7.103 25 C -0.151 4.151 26 C -0.242 4.242 27 C -0.181 4.181 28 H 0.072 0.928 29 H 0.097 0.903 30 H 0.060 0.940 31 H 0.133 0.867 32 H 0.135 0.865 33 H 0.252 0.748 34 H 0.177 0.823 35 H 0.172 0.828 36 H 0.169 0.831 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.107 0.893 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.981 -13.828 -17.085 22.069 hybrid contribution -0.537 0.841 -0.254 1.030 sum 1.443 -12.987 -17.339 21.712 Atomic orbital electron populations 1.69997 1.05936 1.26815 1.49040 1.25025 0.94872 0.99168 0.94401 0.86579 0.79993 0.83133 0.78262 1.20567 1.21140 1.19673 1.20390 0.93162 0.88265 1.51096 0.91759 1.18781 0.99179 0.94310 0.84267 1.23033 0.85116 0.97107 0.90430 1.86515 1.41787 1.69927 1.25987 1.23232 0.89398 0.74972 0.82924 1.90614 1.21884 1.52704 1.76113 1.20701 0.93434 1.02062 0.83781 1.45640 1.11571 1.62906 1.16661 1.17840 0.86404 0.78197 0.82484 1.90841 1.13601 1.55307 1.80192 1.19448 0.92340 1.00692 0.94987 1.21299 1.02495 0.97559 0.91049 1.17065 0.87450 0.98626 0.86214 1.91571 1.73016 1.86912 1.58863 1.21260 0.92260 1.04198 1.01103 1.17052 0.77633 0.99932 0.94446 1.91585 1.28759 1.93951 1.95981 1.21471 0.95005 1.00590 0.98004 1.23025 0.98617 0.95676 1.06860 1.22546 0.92318 1.01234 1.01968 0.92843 0.90329 0.93986 0.86710 0.86500 0.74822 0.82310 0.82784 0.83108 0.91503 0.89949 0.89321 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.11 12.88 55.43 0.71 -23.40 16 2 C 0.07 1.82 5.38 -17.82 -0.10 1.72 16 3 Si 0.89 20.54 29.54 -169.99 -5.02 15.52 16 4 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 7 C -0.49 -12.92 8.77 -34.44 -0.30 -13.22 16 8 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 9 C 0.04 0.83 1.62 -155.67 -0.25 0.58 16 10 C 0.12 2.57 5.28 37.16 0.20 2.76 16 11 O -0.33 -6.51 10.16 -39.24 -0.40 -6.91 16 12 C 0.45 7.45 8.03 36.01 0.29 7.74 16 13 O -0.52 -9.43 15.42 -18.75 -0.29 -9.72 16 14 C 0.12 1.55 6.27 -5.19 -0.03 1.52 16 15 N -0.71 -7.92 5.48 -62.42 -0.34 -8.26 16 16 C 0.56 6.37 7.77 -12.33 -0.10 6.27 16 17 O -0.52 -7.34 16.35 5.32 0.09 -7.25 16 18 C -0.07 -0.64 5.87 -104.98 -0.62 -1.26 16 19 C -0.10 -0.88 9.57 -39.11 -0.37 -1.25 16 20 C 0.13 0.97 7.29 -39.49 -0.29 0.68 16 21 F -0.13 -1.03 17.26 2.25 0.04 -0.99 16 22 C -0.17 -1.15 10.00 -39.37 -0.39 -1.54 16 23 C 0.13 0.99 7.29 -39.49 -0.29 0.71 16 24 F -0.12 -1.06 17.26 2.25 0.04 -1.02 16 25 C -0.13 -1.03 9.52 -39.11 -0.37 -1.41 16 26 C -0.20 -4.25 9.96 -26.69 -0.27 -4.51 16 27 C -0.14 -3.18 9.37 -26.69 -0.25 -3.43 16 28 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 29 H 0.08 1.93 8.14 -51.92 -0.42 1.50 16 30 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 31 H 0.12 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 33 H 0.41 4.25 5.47 -40.82 -0.22 4.02 16 34 H 0.16 1.31 7.65 -52.48 -0.40 0.90 16 35 H 0.15 0.75 8.06 -52.49 -0.42 0.33 16 36 H 0.15 1.03 6.40 -52.48 -0.34 0.70 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.08 1.69 8.14 -51.93 -0.42 1.26 16 39 H 0.09 2.09 8.14 -51.93 -0.42 1.67 16 40 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 366.45 15.07 5.52 5.52 Total: -1.00 -29.75 366.45 -7.10 -36.85 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: -4.31 Total: 4.29 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -3.14 Total: -4.64 kcal Atomic # 7 Polarization: -32.03 SS G_CDS: 0.37 Total: -31.66 kcal Atomic # 8 Polarization: -23.28 SS G_CDS: -0.60 Total: -23.88 kcal Atomic # 9 Polarization: -2.09 SS G_CDS: 0.08 Total: -2.01 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -29.75 -7.10 -36.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849712908.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.700 kcal (2) G-P(sol) polarization free energy of solvation -29.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds