Wall clock time and date at job start Tue Mar 31 2020 22:24:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 120.00296 * 2 1 4 4 H 1.48497 * 109.47631 * 270.00208 * 3 2 1 5 5 H 1.48504 * 109.47130 * 30.00510 * 3 2 1 6 6 H 1.48510 * 109.47010 * 150.00055 * 3 2 1 7 7 C 1.37882 * 119.99444 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99698 * 173.70134 * 7 2 1 9 9 C 1.50693 * 120.00144 * 353.69894 * 7 2 1 10 10 C 1.52996 * 115.54933 * 86.11464 * 9 7 2 11 11 O 1.45199 * 109.47797 * 65.10347 * 10 9 7 12 12 C 1.34222 * 117.00242 * 179.97438 * 11 10 9 13 13 O 1.20826 * 120.00155 * 0.02562 * 12 11 10 14 14 C 1.50701 * 120.00031 * 179.97438 * 12 11 10 15 15 N 1.46503 * 109.47361 * 180.02562 * 14 12 11 16 16 C 1.34770 * 120.00138 * 180.02562 * 15 14 12 17 17 O 1.21553 * 119.99952 * 0.02562 * 16 15 14 18 18 C 1.47857 * 120.00124 * 180.02562 * 16 15 14 19 19 C 1.39552 * 120.12256 * 179.97438 * 18 16 15 20 20 C 1.38198 * 119.87931 * 179.97438 * 19 18 16 21 21 F 1.35093 * 119.94169 * 180.02562 * 20 19 18 22 22 C 1.38532 * 120.11877 * 0.02562 * 20 19 18 23 23 C 1.38528 * 120.24673 * 359.97438 * 22 20 19 24 24 F 1.35097 * 119.94020 * 179.97438 * 23 22 20 25 25 C 1.38200 * 120.12114 * 0.02562 * 23 22 20 26 26 C 1.53000 * 117.49730 * 231.77679 * 9 7 2 27 27 C 1.52997 * 117.49983 * 300.44003 * 9 7 2 28 28 H 0.97006 * 119.99332 * 359.97438 * 1 2 3 29 29 H 1.09008 * 109.47024 * 305.09854 * 10 9 7 30 30 H 1.09000 * 109.47242 * 185.10999 * 10 9 7 31 31 H 1.09003 * 109.46862 * 60.00600 * 14 12 11 32 32 H 1.08997 * 109.47243 * 300.00830 * 14 12 11 33 33 H 0.96999 * 119.99469 * 0.02562 * 15 14 12 34 34 H 1.08004 * 120.05745 * 359.70744 * 19 18 16 35 35 H 1.08002 * 119.87374 * 179.97438 * 22 20 19 36 36 H 1.08003 * 120.06474 * 179.97438 * 25 23 22 37 37 H 1.09000 * 117.49801 * 215.00284 * 26 9 7 38 38 H 1.08996 * 117.49805 * 0.02738 * 26 9 7 39 39 H 1.09004 * 117.49817 * 359.97438 * 27 9 7 40 40 H 1.09000 * 117.49968 * 144.97744 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0465 -1.4000 5 1 1.4468 2.6526 0.7002 6 1 3.5469 1.4400 0.7001 7 6 2.0045 -1.1942 -0.0005 8 1 3.0796 -1.1970 -0.1032 9 6 1.2577 -2.4953 0.1421 10 6 0.7191 -3.0930 -1.1592 11 8 1.8297 -3.4642 -2.0176 12 6 1.5258 -4.0080 -3.2065 13 8 0.3699 -4.1681 -3.5198 14 6 2.6262 -4.4178 -4.1511 15 7 2.0393 -4.9793 -5.3704 16 6 2.8386 -5.4165 -6.3635 17 8 4.0465 -5.3454 -6.2474 18 6 2.2463 -5.9827 -7.5942 19 6 3.0715 -6.4357 -8.6244 20 6 2.5126 -6.9645 -9.7723 21 9 3.3103 -7.4038 -10.7701 22 6 1.1356 -7.0448 -9.9017 23 6 0.3116 -6.5967 -8.8823 24 9 -1.0303 -6.6775 -9.0152 25 6 0.8599 -6.0661 -7.7300 26 6 1.7340 -3.4683 1.2225 27 6 0.4252 -2.6967 1.4099 28 1 -0.4849 0.8402 0.0004 29 1 0.0974 -2.3560 -1.6676 30 1 0.1230 -3.9772 -0.9335 31 1 3.2558 -5.1675 -3.6720 32 1 3.2291 -3.5464 -4.4064 33 1 1.0754 -5.0364 -5.4628 34 1 4.1451 -6.3691 -8.5264 35 1 0.7030 -7.4584 -10.8007 36 1 0.2166 -5.7166 -6.9359 37 1 1.6635 -4.5343 1.0062 38 1 2.5871 -3.1672 1.8303 39 1 0.4180 -1.8883 2.1410 40 1 -0.5064 -3.2548 1.3168 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000849712908.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:24:33 Heat of formation + Delta-G solvation = -171.265947 kcal Electronic energy + Delta-G solvation = -27681.726912 eV Core-core repulsion = 23098.177116 eV Total energy + Delta-G solvation = -4583.549796 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.13579 -50.11701 -41.83639 -41.10488 -39.22699 -38.63230 -37.13508 -35.86050 -34.02198 -32.71116 -31.57225 -30.04257 -28.26085 -27.19861 -25.38991 -23.94548 -23.00766 -22.23211 -21.87450 -21.20612 -20.11965 -18.70927 -18.38180 -18.32202 -17.81013 -17.67543 -17.46802 -17.16584 -17.15406 -16.68923 -16.51251 -16.42147 -16.34610 -16.28957 -15.62169 -15.43573 -15.03218 -14.76211 -14.42630 -13.93242 -13.76729 -13.61744 -13.52200 -13.16365 -13.04925 -13.00384 -12.91384 -12.83909 -12.39738 -12.08635 -11.82250 -11.72143 -11.48685 -11.42279 -10.77678 -10.55886 -10.49158 -10.26178 -10.09046 -9.98766 -8.14762 -6.25333 -0.67328 -0.24160 1.05741 1.26158 1.41300 1.41538 1.44033 1.53285 2.07130 2.34392 2.42153 2.65370 3.09883 3.14489 3.25513 3.37175 3.57740 3.66690 3.77709 3.83020 4.12738 4.19325 4.20204 4.34327 4.39135 4.47127 4.56093 4.65029 4.67045 4.76028 4.80072 4.85558 4.96379 4.98725 5.20057 5.43256 5.49273 5.57882 5.63916 5.75095 6.16082 6.35268 6.63640 6.80317 6.84200 7.43689 8.93831 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017654 B = 0.002084 C = 0.002045 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1585.689914 B =13429.741878 C =13691.483335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.024 3.976 3 Si 0.949 3.051 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.267 1.267 7 C -0.505 4.505 8 H 0.056 0.944 9 C 0.002 3.998 10 C 0.129 3.871 11 O -0.340 6.340 12 C 0.453 3.547 13 O -0.538 6.538 14 C 0.135 3.865 15 N -0.708 5.708 16 C 0.570 3.430 17 O -0.553 6.553 18 C -0.081 4.081 19 C -0.103 4.103 20 C 0.124 3.876 21 F -0.128 7.128 22 C -0.152 4.152 23 C 0.123 3.877 24 F -0.128 7.128 25 C -0.124 4.124 26 C -0.178 4.178 27 C -0.146 4.146 28 H 0.261 0.739 29 H 0.045 0.955 30 H 0.056 0.944 31 H 0.134 0.866 32 H 0.125 0.875 33 H 0.417 0.583 34 H 0.158 0.842 35 H 0.177 0.823 36 H 0.160 0.840 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.065 -15.007 -18.114 23.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.176 4.176 3 Si 0.775 3.225 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.542 4.542 8 H 0.074 0.926 9 C 0.001 3.999 10 C 0.056 3.944 11 O -0.255 6.255 12 C 0.298 3.702 13 O -0.429 6.429 14 C 0.010 3.990 15 N -0.365 5.365 16 C 0.358 3.642 17 O -0.432 6.432 18 C -0.085 4.085 19 C -0.123 4.123 20 C 0.104 3.896 21 F -0.106 7.106 22 C -0.171 4.171 23 C 0.104 3.896 24 F -0.107 7.107 25 C -0.144 4.144 26 C -0.215 4.215 27 C -0.184 4.184 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.152 0.848 32 H 0.143 0.857 33 H 0.257 0.743 34 H 0.175 0.825 35 H 0.195 0.805 36 H 0.177 0.823 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.087 0.913 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.378 -14.855 -18.062 23.506 hybrid contribution -0.671 1.094 -0.022 1.284 sum 1.707 -13.761 -18.083 22.788 Atomic orbital electron populations 1.70095 1.07038 1.27299 1.50161 1.25687 0.95585 1.02012 0.94336 0.85694 0.78976 0.79661 0.78174 1.20386 1.20953 1.19141 1.20649 0.93012 0.89839 1.50722 0.92613 1.18893 1.00652 0.94741 0.85574 1.22595 0.85295 0.96641 0.89916 1.86501 1.41002 1.70714 1.27271 1.23905 0.90227 0.73898 0.82219 1.90606 1.22975 1.53198 1.76147 1.20713 0.91897 1.02958 0.83396 1.45616 1.11841 1.62738 1.16267 1.18069 0.85936 0.77453 0.82762 1.90827 1.14833 1.56693 1.80824 1.19198 0.92778 1.02112 0.94379 1.21327 1.02504 0.97281 0.91189 1.17022 0.87738 0.98889 0.85951 1.91570 1.73168 1.86975 1.58883 1.21451 0.91711 1.02556 1.01431 1.17065 0.77536 1.00387 0.94648 1.91580 1.29057 1.94040 1.96002 1.21528 0.94575 0.99896 0.98356 1.23032 0.97555 0.96533 1.04338 1.22482 0.93758 1.01295 1.00856 0.93002 0.93691 0.92599 0.84819 0.85734 0.74274 0.82460 0.80546 0.82282 0.88811 0.89772 0.91332 0.90223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.43 12.88 21.45 0.28 -50.15 16 2 C 0.02 1.29 5.38 84.66 0.46 1.75 16 3 Si 0.95 42.33 29.54 68.60 2.03 44.36 16 4 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 6 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 7 C -0.50 -26.66 8.77 25.60 0.22 -26.43 16 8 H 0.06 2.96 7.82 -2.91 -0.02 2.93 16 9 C 0.00 0.09 1.62 -52.93 -0.09 0.00 16 10 C 0.13 5.71 5.28 71.98 0.38 6.09 16 11 O -0.34 -13.33 10.16 -51.34 -0.52 -13.85 16 12 C 0.45 14.59 8.03 71.24 0.57 15.16 16 13 O -0.54 -19.10 15.42 21.97 0.34 -18.76 16 14 C 0.13 3.17 6.27 85.63 0.54 3.71 16 15 N -0.71 -14.87 5.48 -469.69 -2.57 -17.45 16 16 C 0.57 12.26 7.77 86.79 0.67 12.93 16 17 O -0.55 -15.07 16.35 -3.88 -0.06 -15.14 16 18 C -0.08 -1.37 5.87 -20.10 -0.12 -1.49 16 19 C -0.10 -1.62 9.57 22.58 0.22 -1.40 16 20 C 0.12 1.69 7.29 22.33 0.16 1.85 16 21 F -0.13 -1.88 17.26 44.97 0.78 -1.11 16 22 C -0.15 -1.73 10.00 22.41 0.22 -1.51 16 23 C 0.12 1.66 7.29 22.33 0.16 1.83 16 24 F -0.13 -1.96 17.26 44.97 0.78 -1.18 16 25 C -0.12 -1.77 9.52 22.58 0.21 -1.55 16 26 C -0.18 -7.08 9.96 30.62 0.30 -6.78 16 27 C -0.15 -6.45 9.37 30.62 0.29 -6.16 16 28 H 0.26 13.90 8.31 -92.70 -0.77 13.13 16 29 H 0.04 2.26 8.14 -2.38 -0.02 2.24 16 30 H 0.06 2.26 8.08 -2.39 -0.02 2.24 16 31 H 0.13 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.12 2.82 8.14 -2.39 -0.02 2.80 16 33 H 0.42 8.08 5.47 -92.71 -0.51 7.57 16 34 H 0.16 2.49 7.65 -2.91 -0.02 2.47 16 35 H 0.18 1.19 8.06 -2.91 -0.02 1.16 16 36 H 0.16 1.94 6.40 -2.91 -0.02 1.92 16 37 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 38 H 0.08 3.31 8.14 -2.39 -0.02 3.29 16 39 H 0.07 3.26 8.14 -2.39 -0.02 3.24 16 40 H 0.08 3.23 8.14 -2.39 -0.02 3.21 16 Total: -1.00 -63.21 366.45 5.85 -57.37 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.60 Total: 17.94 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 4.21 Total: -2.03 kcal Atomic # 7 Polarization: -65.30 SS G_CDS: -2.30 Total: -67.60 kcal Atomic # 8 Polarization: -47.50 SS G_CDS: -0.25 Total: -47.75 kcal Atomic # 9 Polarization: -3.84 SS G_CDS: 1.55 Total: -2.29 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -63.21 5.85 -57.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000849712908.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -113.900 kcal (2) G-P(sol) polarization free energy of solvation -63.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds