Wall clock time and date at job start Tue Mar 31 2020 22:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99868 * 2 1 4 4 H 1.48501 * 109.47205 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47140 * 119.99948 * 3 2 1 6 6 H 1.48500 * 109.47465 * 240.00103 * 3 2 1 7 7 C 1.37872 * 120.00438 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00653 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99886 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47333 * 180.02562 * 9 7 2 11 11 O 1.45201 * 109.47494 * 179.97438 * 10 9 7 12 12 C 1.34228 * 116.99986 * 180.02562 * 11 10 9 13 13 O 1.20815 * 120.00291 * 359.97438 * 12 11 10 14 14 C 1.50705 * 119.99679 * 179.97438 * 12 11 10 15 15 H 1.09001 * 110.85640 * 303.79073 * 14 12 11 16 16 C 1.54629 * 110.96796 * 67.62206 * 14 12 11 17 17 C 1.51277 * 104.19456 * 142.91428 * 16 14 12 18 18 O 1.21295 * 124.94159 * 163.74771 * 17 16 14 19 19 N 1.34414 * 110.11802 * 343.75154 * 17 16 14 20 20 C 1.40018 * 124.35256 * 179.61661 * 19 17 16 21 21 C 1.38869 * 120.03818 * 174.17905 * 20 19 17 22 22 C 1.38127 * 119.99783 * 179.97438 * 21 20 19 23 23 C 1.38420 * 120.07260 * 0.02562 * 22 21 20 24 24 F 1.35106 * 119.96723 * 179.97438 * 23 22 21 25 25 C 1.38672 * 120.07292 * 0.02562 * 23 22 21 26 26 F 1.35102 * 120.00357 * 179.97438 * 25 23 22 27 27 C 1.38322 * 119.99667 * 359.69673 * 25 23 22 28 28 C 1.46762 * 111.30065 * 359.58662 * 19 17 16 29 29 H 0.97001 * 119.99477 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47219 * 299.99874 * 9 7 2 31 31 H 1.08996 * 109.47265 * 59.99658 * 9 7 2 32 32 H 1.09000 * 109.47343 * 300.00463 * 10 9 7 33 33 H 1.09004 * 109.47180 * 59.99836 * 10 9 7 34 34 H 1.09005 * 110.48539 * 261.59456 * 16 14 12 35 35 H 1.08997 * 110.48776 * 24.23598 * 16 14 12 36 36 H 1.08000 * 120.00147 * 0.02562 * 21 20 19 37 37 H 1.08003 * 119.96256 * 180.02562 * 22 21 20 38 38 H 1.08001 * 120.03916 * 180.29570 * 27 25 23 39 39 H 1.09002 * 110.24819 * 258.02416 * 28 19 17 40 40 H 1.08999 * 110.31694 * 136.05737 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 8 1.5195 -4.9195 0.0001 12 6 2.2506 -6.0452 0.0007 13 8 3.4571 -5.9819 0.0002 14 6 1.5665 -7.3880 0.0019 15 1 0.8858 -7.4760 0.8487 16 6 0.8251 -7.6325 -1.3328 17 6 1.0219 -9.1081 -1.6016 18 8 0.3752 -9.7627 -2.3919 19 7 2.0178 -9.5885 -0.8372 20 6 2.4445 -10.9220 -0.8419 21 6 3.5607 -11.2973 -0.1058 22 6 3.9807 -12.6132 -0.1105 23 6 3.2904 -13.5589 -0.8489 24 9 3.7034 -14.8453 -0.8525 25 6 2.1761 -13.1872 -1.5859 26 9 1.5037 -14.1113 -2.3065 27 6 1.7495 -11.8714 -1.5787 28 6 2.6008 -8.5354 0.0024 29 1 -0.4849 -0.8401 0.0004 30 1 0.6248 -2.5571 0.8897 31 1 0.6241 -2.5567 -0.8902 32 1 2.8721 -3.6042 -0.8905 33 1 2.8721 -3.6042 0.8895 34 1 -0.2352 -7.4019 -1.2281 35 1 1.2690 -7.0369 -2.1304 36 1 4.0999 -10.5604 0.4711 37 1 4.8485 -12.9044 0.4625 38 1 0.8789 -11.5822 -2.1486 39 1 3.5442 -8.1930 -0.4228 40 1 2.7561 -8.9028 1.0168 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000859916007.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:34 Heat of formation + Delta-G solvation = -184.736852 kcal Electronic energy + Delta-G solvation = -27884.324943 eV Core-core repulsion = 23300.191005 eV Total energy + Delta-G solvation = -4584.133938 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.80337 -48.87469 -41.87686 -40.26847 -38.88619 -37.25868 -36.33224 -33.91244 -33.62372 -31.37466 -30.31946 -29.42579 -28.38241 -25.50554 -24.21944 -24.05772 -22.69059 -21.50736 -20.77114 -20.38411 -18.65904 -18.18759 -18.08459 -17.58325 -16.99526 -16.77465 -16.66311 -16.57322 -16.21991 -15.74347 -15.48098 -15.28601 -14.83541 -14.58510 -14.38073 -14.27150 -14.11764 -13.84059 -13.72307 -13.48684 -13.28155 -12.96681 -12.69507 -12.18210 -12.17974 -11.97921 -11.94158 -11.71505 -11.50151 -10.80308 -10.70200 -10.59877 -10.28391 -10.21261 -10.04856 -9.96024 -9.52276 -8.84455 -8.49805 -8.48996 -6.54660 -4.26783 0.35220 0.50013 1.91147 1.96842 2.09607 2.68139 2.94001 3.36382 3.37427 3.38758 3.56193 3.56769 3.70648 3.92946 4.10212 4.23587 4.33692 4.38861 4.44980 4.56377 4.68874 4.84059 4.90652 5.01612 5.20100 5.23888 5.29982 5.31950 5.38176 5.42937 5.54235 5.76290 5.79465 5.84130 6.32140 6.33571 6.35182 6.58377 7.13135 7.19882 7.39777 7.74824 7.94081 8.24718 8.67007 9.45862 10.86625 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.034741 B = 0.001808 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.765371 B =15480.853444 C =16090.890401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.020 3.980 3 Si 1.073 2.927 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.610 4.610 8 H 0.053 0.947 9 C 0.011 3.989 10 C 0.082 3.918 11 O -0.352 6.352 12 C 0.469 3.531 13 O -0.507 6.507 14 C -0.097 4.097 15 H 0.135 0.865 16 C -0.139 4.139 17 C 0.524 3.476 18 O -0.498 6.498 19 N -0.559 5.559 20 C 0.192 3.808 21 C -0.139 4.139 22 C -0.093 4.093 23 C 0.038 3.962 24 F -0.130 7.130 25 C 0.101 3.899 26 F -0.124 7.124 27 C -0.169 4.169 28 C 0.106 3.894 29 H 0.271 0.729 30 H 0.020 0.980 31 H 0.020 0.980 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.128 0.872 35 H 0.120 0.880 36 H 0.147 0.853 37 H 0.152 0.848 38 H 0.177 0.823 39 H 0.107 0.893 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.472 -24.924 1.170 25.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.185 4.185 3 Si 0.900 3.100 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.213 1.213 7 C -0.648 4.648 8 H 0.072 0.928 9 C -0.026 4.026 10 C 0.010 3.990 11 O -0.267 6.267 12 C 0.311 3.689 13 O -0.396 6.396 14 C -0.117 4.117 15 H 0.152 0.848 16 C -0.179 4.179 17 C 0.313 3.687 18 O -0.372 6.372 19 N -0.282 5.282 20 C 0.097 3.903 21 C -0.160 4.160 22 C -0.113 4.113 23 C 0.016 3.984 24 F -0.109 7.109 25 C 0.080 3.920 26 F -0.102 7.102 27 C -0.190 4.190 28 C -0.016 4.016 29 H 0.081 0.919 30 H 0.038 0.962 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.146 0.854 35 H 0.138 0.862 36 H 0.164 0.836 37 H 0.170 0.830 38 H 0.194 0.806 39 H 0.125 0.875 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.243 -23.593 0.702 24.179 hybrid contribution 0.388 -2.022 -0.032 2.059 sum 5.631 -25.616 0.670 26.236 Atomic orbital electron populations 1.70788 1.06870 1.30832 1.45475 1.25903 0.96475 1.02767 0.93314 0.83486 0.74873 0.74947 0.76702 1.20568 1.21250 1.21252 1.21800 0.94471 0.91043 1.57469 0.92841 1.19312 0.94849 0.90700 0.97716 1.23575 0.96071 0.77928 1.01477 1.86514 1.42332 1.15744 1.82134 1.22705 0.86226 0.86797 0.73173 1.90668 1.15416 1.88028 1.45515 1.21849 0.98311 0.90012 1.01515 0.84752 1.22347 1.05142 0.92980 0.97406 1.21069 0.78340 0.90183 0.79093 1.90665 1.47943 1.63957 1.34680 1.45861 1.34596 1.06919 1.40840 1.17417 0.93891 0.82475 0.96479 1.20763 0.96583 0.96541 1.02109 1.20852 1.00226 0.91553 0.98623 1.17645 0.96893 0.80345 1.03471 1.91530 1.89652 1.34300 1.95404 1.17396 0.92275 0.87116 0.95225 1.91552 1.78864 1.64491 1.75293 1.21453 1.04057 0.89867 1.03646 1.22293 0.97379 0.85105 0.96781 0.91887 0.96162 0.96138 0.91830 0.91803 0.85363 0.86167 0.83555 0.82998 0.80631 0.87458 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.51 13.65 55.43 0.76 -25.75 16 2 C 0.02 0.56 5.46 -17.82 -0.10 0.46 16 3 Si 1.07 24.10 29.90 -169.99 -5.08 19.02 16 4 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 6 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.61 -16.49 9.11 -34.44 -0.31 -16.80 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 9 C 0.01 0.27 4.66 -27.88 -0.13 0.14 16 10 C 0.08 1.62 5.40 37.16 0.20 1.82 16 11 O -0.35 -5.76 10.22 -39.25 -0.40 -6.16 16 12 C 0.47 6.13 7.19 36.01 0.26 6.39 16 13 O -0.51 -7.79 15.25 -18.74 -0.29 -8.08 16 14 C -0.10 -0.80 3.66 -90.14 -0.33 -1.13 16 15 H 0.13 0.80 8.14 -51.93 -0.42 0.38 16 16 C -0.14 -1.16 6.41 -26.74 -0.17 -1.33 16 17 C 0.52 5.26 7.92 -10.86 -0.09 5.18 16 18 O -0.50 -6.46 14.82 5.54 0.08 -6.38 16 19 N -0.56 -4.78 3.14 -112.26 -0.35 -5.13 16 20 C 0.19 1.68 6.60 -83.67 -0.55 1.13 16 21 C -0.14 -0.91 9.40 -39.39 -0.37 -1.28 16 22 C -0.09 -0.61 10.02 -39.56 -0.40 -1.01 16 23 C 0.04 0.34 7.30 -39.35 -0.29 0.05 16 24 F -0.13 -1.31 17.18 2.25 0.04 -1.27 16 25 C 0.10 1.03 7.30 -39.39 -0.29 0.75 16 26 F -0.12 -1.42 17.18 2.25 0.04 -1.38 16 27 C -0.17 -1.73 9.26 -39.33 -0.36 -2.09 16 28 C 0.11 0.74 5.63 -3.12 -0.02 0.73 16 29 H 0.27 7.86 7.22 -40.82 -0.29 7.56 16 30 H 0.02 0.50 8.01 -51.93 -0.42 0.09 16 31 H 0.02 0.51 8.01 -51.93 -0.42 0.09 16 32 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 33 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 34 H 0.13 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.12 1.04 7.89 -51.93 -0.41 0.63 16 36 H 0.15 0.61 7.01 -52.49 -0.37 0.25 16 37 H 0.15 0.61 8.06 -52.48 -0.42 0.18 16 38 H 0.18 2.04 5.26 -52.49 -0.28 1.77 16 39 H 0.11 0.84 6.96 -51.93 -0.36 0.48 16 40 H 0.10 0.47 7.70 -51.93 -0.40 0.07 16 LS Contribution 354.41 15.07 5.34 5.34 Total: -1.00 -32.39 354.41 -7.07 -39.46 By element: Atomic # 1 Polarization: 1.56 SS G_CDS: -4.26 Total: -2.69 kcal Atomic # 6 Polarization: -4.04 SS G_CDS: -2.94 Total: -6.98 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: 0.40 Total: -30.88 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: -0.60 Total: -20.61 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.08 Total: -2.65 kcal Atomic # 14 Polarization: 24.10 SS G_CDS: -5.08 Total: 19.02 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.39 -7.07 -39.46 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859916007.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.281 kcal (2) G-P(sol) polarization free energy of solvation -32.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds