Wall clock time and date at job start Tue Mar 31 2020 22:25:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99868 * 2 1 4 4 H 1.48501 * 109.47205 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.47140 * 119.99948 * 3 2 1 6 6 H 1.48500 * 109.47465 * 240.00103 * 3 2 1 7 7 C 1.37872 * 120.00438 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00653 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99886 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47333 * 180.02562 * 9 7 2 11 11 O 1.45201 * 109.47494 * 179.97438 * 10 9 7 12 12 C 1.34228 * 116.99986 * 180.02562 * 11 10 9 13 13 O 1.20815 * 120.00291 * 359.97438 * 12 11 10 14 14 C 1.50705 * 119.99679 * 179.97438 * 12 11 10 15 15 H 1.09001 * 110.85640 * 303.79073 * 14 12 11 16 16 C 1.54629 * 110.96796 * 67.62206 * 14 12 11 17 17 C 1.51277 * 104.19456 * 142.91428 * 16 14 12 18 18 O 1.21295 * 124.94159 * 163.74771 * 17 16 14 19 19 N 1.34414 * 110.11802 * 343.75154 * 17 16 14 20 20 C 1.40018 * 124.35256 * 179.61661 * 19 17 16 21 21 C 1.38869 * 120.03818 * 174.17905 * 20 19 17 22 22 C 1.38127 * 119.99783 * 179.97438 * 21 20 19 23 23 C 1.38420 * 120.07260 * 0.02562 * 22 21 20 24 24 F 1.35106 * 119.96723 * 179.97438 * 23 22 21 25 25 C 1.38672 * 120.07292 * 0.02562 * 23 22 21 26 26 F 1.35102 * 120.00357 * 179.97438 * 25 23 22 27 27 C 1.38322 * 119.99667 * 359.69673 * 25 23 22 28 28 C 1.46762 * 111.30065 * 359.58662 * 19 17 16 29 29 H 0.97001 * 119.99477 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47219 * 299.99874 * 9 7 2 31 31 H 1.08996 * 109.47265 * 59.99658 * 9 7 2 32 32 H 1.09000 * 109.47343 * 300.00463 * 10 9 7 33 33 H 1.09004 * 109.47180 * 59.99836 * 10 9 7 34 34 H 1.09005 * 110.48539 * 261.59456 * 16 14 12 35 35 H 1.08997 * 110.48776 * 24.23598 * 16 14 12 36 36 H 1.08000 * 120.00147 * 0.02562 * 21 20 19 37 37 H 1.08003 * 119.96256 * 180.02562 * 22 21 20 38 38 H 1.08001 * 120.03916 * 180.29570 * 27 25 23 39 39 H 1.09002 * 110.24819 * 258.02416 * 28 19 17 40 40 H 1.08999 * 110.31694 * 136.05737 * 28 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 1.2841 2.7465 -0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1028 1.6965 -1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 8 1.5195 -4.9195 0.0001 12 6 2.2506 -6.0452 0.0007 13 8 3.4571 -5.9819 0.0002 14 6 1.5665 -7.3880 0.0019 15 1 0.8858 -7.4760 0.8487 16 6 0.8251 -7.6325 -1.3328 17 6 1.0219 -9.1081 -1.6016 18 8 0.3752 -9.7627 -2.3919 19 7 2.0178 -9.5885 -0.8372 20 6 2.4445 -10.9220 -0.8419 21 6 3.5607 -11.2973 -0.1058 22 6 3.9807 -12.6132 -0.1105 23 6 3.2904 -13.5589 -0.8489 24 9 3.7034 -14.8453 -0.8525 25 6 2.1761 -13.1872 -1.5859 26 9 1.5037 -14.1113 -2.3065 27 6 1.7495 -11.8714 -1.5787 28 6 2.6008 -8.5354 0.0024 29 1 -0.4849 -0.8401 0.0004 30 1 0.6248 -2.5571 0.8897 31 1 0.6241 -2.5567 -0.8902 32 1 2.8721 -3.6042 -0.8905 33 1 2.8721 -3.6042 0.8895 34 1 -0.2352 -7.4019 -1.2281 35 1 1.2690 -7.0369 -2.1304 36 1 4.0999 -10.5604 0.4711 37 1 4.8485 -12.9044 0.4625 38 1 0.8789 -11.5822 -2.1486 39 1 3.5442 -8.1930 -0.4228 40 1 2.7561 -8.9028 1.0168 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000859916007.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:33 Heat of formation + Delta-G solvation = -202.455779 kcal Electronic energy + Delta-G solvation = -27885.093293 eV Core-core repulsion = 23300.191005 eV Total energy + Delta-G solvation = -4584.902288 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.57418 -49.64478 -42.64533 -41.37142 -39.59050 -38.25884 -37.45129 -35.80855 -34.43488 -32.14030 -31.96856 -30.21255 -29.06516 -26.94615 -25.48530 -24.78458 -23.65359 -23.09190 -21.65143 -21.24067 -19.48557 -19.17141 -18.80486 -18.69607 -18.27035 -17.98648 -17.57209 -17.46355 -17.30701 -16.59340 -16.35896 -16.07627 -15.63665 -15.58080 -15.47476 -15.29133 -15.12529 -14.96207 -14.79600 -14.49882 -14.30917 -13.87142 -13.65576 -13.62763 -13.37039 -13.18413 -12.76437 -12.69547 -12.60551 -12.47939 -12.09827 -11.89444 -11.66776 -11.54997 -11.26561 -11.05011 -10.84359 -10.57514 -10.19085 -9.16940 -8.73692 -6.46515 -0.32776 -0.13943 1.00773 1.18223 1.23558 1.55587 1.63410 1.66531 1.83116 2.29560 2.56453 2.71484 2.85016 3.02434 3.12418 3.24199 3.44836 3.53377 3.61822 3.81058 3.89709 3.96102 4.06384 4.13378 4.14939 4.32975 4.44796 4.57784 4.60120 4.70352 4.71380 4.76878 4.86520 4.89527 5.04564 5.17224 5.24702 5.49069 5.65448 5.68872 5.85101 6.11121 6.49230 6.58868 6.66127 7.35176 8.68397 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.034741 B = 0.001808 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.765371 B =15480.853444 C =16090.890401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.032 4.032 3 Si 1.119 2.881 4 H -0.284 1.284 5 H -0.267 1.267 6 H -0.269 1.269 7 C -0.624 4.624 8 H 0.057 0.943 9 C 0.012 3.988 10 C 0.098 3.902 11 O -0.359 6.359 12 C 0.472 3.528 13 O -0.527 6.527 14 C -0.083 4.083 15 H 0.167 0.833 16 C -0.136 4.136 17 C 0.520 3.480 18 O -0.535 6.535 19 N -0.554 5.554 20 C 0.182 3.818 21 C -0.121 4.121 22 C -0.078 4.078 23 C 0.028 3.972 24 F -0.138 7.138 25 C 0.079 3.921 26 F -0.139 7.139 27 C -0.183 4.183 28 C 0.108 3.892 29 H 0.259 0.741 30 H 0.006 0.994 31 H 0.004 0.996 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.141 0.859 35 H 0.116 0.884 36 H 0.181 0.819 37 H 0.187 0.813 38 H 0.156 0.844 39 H 0.104 0.896 40 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.622 -25.059 2.812 26.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.231 4.231 3 Si 0.940 3.060 4 H -0.209 1.209 5 H -0.192 1.192 6 H -0.194 1.194 7 C -0.662 4.662 8 H 0.076 0.924 9 C -0.025 4.025 10 C 0.025 3.975 11 O -0.275 6.275 12 C 0.315 3.685 13 O -0.416 6.416 14 C -0.102 4.102 15 H 0.184 0.816 16 C -0.176 4.176 17 C 0.311 3.689 18 O -0.412 6.412 19 N -0.276 5.276 20 C 0.088 3.912 21 C -0.141 4.141 22 C -0.097 4.097 23 C 0.007 3.993 24 F -0.117 7.117 25 C 0.058 3.942 26 F -0.118 7.118 27 C -0.204 4.204 28 C -0.013 4.013 29 H 0.068 0.932 30 H 0.024 0.976 31 H 0.022 0.978 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.159 0.841 35 H 0.134 0.866 36 H 0.199 0.801 37 H 0.204 0.796 38 H 0.173 0.827 39 H 0.122 0.878 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.420 -23.768 2.359 25.011 hybrid contribution -0.252 -2.079 -0.545 2.164 sum 7.168 -25.847 1.814 26.884 Atomic orbital electron populations 1.70912 1.07935 1.30197 1.47739 1.27429 0.96553 1.06728 0.92372 0.82905 0.74112 0.70850 0.78169 1.20930 1.19178 1.19370 1.22235 0.94983 0.92432 1.56550 0.92429 1.19163 0.95185 0.92045 0.96135 1.22993 0.94512 0.78579 1.01427 1.86493 1.42460 1.15653 1.82896 1.23518 0.86101 0.87063 0.71798 1.90666 1.16458 1.88217 1.46269 1.21915 0.98768 0.87099 1.02457 0.81583 1.22352 1.06025 0.91754 0.97450 1.21321 0.78296 0.90596 0.78718 1.90662 1.49419 1.64808 1.36324 1.45889 1.34054 1.07146 1.40537 1.17584 0.94621 0.82192 0.96848 1.21128 0.95155 0.97107 1.00715 1.21243 1.00300 0.90813 0.97298 1.17897 0.96882 0.80572 1.03942 1.91508 1.89666 1.35025 1.95506 1.17610 0.93246 0.87056 0.96260 1.91501 1.79390 1.65018 1.75890 1.21309 1.04147 0.90418 1.04553 1.22460 0.96347 0.84146 0.98319 0.93162 0.97598 0.97755 0.91980 0.91660 0.84145 0.86586 0.80138 0.79603 0.82712 0.87797 0.84376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.31 13.65 21.45 0.29 -55.01 16 2 C -0.03 -1.79 5.46 84.65 0.46 -1.32 16 3 Si 1.12 47.64 29.90 68.60 2.05 49.69 16 4 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 5 H -0.27 -10.45 7.11 99.48 0.71 -9.74 16 6 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 7 C -0.62 -33.74 9.11 25.60 0.23 -33.50 16 8 H 0.06 3.00 7.74 -2.91 -0.02 2.97 16 9 C 0.01 0.58 4.66 29.85 0.14 0.72 16 10 C 0.10 3.82 5.40 71.98 0.39 4.21 16 11 O -0.36 -11.30 10.22 -51.40 -0.53 -11.82 16 12 C 0.47 11.26 7.19 71.24 0.51 11.78 16 13 O -0.53 -14.97 15.25 22.00 0.34 -14.63 16 14 C -0.08 -1.11 3.66 -10.48 -0.04 -1.15 16 15 H 0.17 1.27 8.14 -2.39 -0.02 1.25 16 16 C -0.14 -2.06 6.41 30.59 0.20 -1.86 16 17 C 0.52 10.01 7.92 87.90 0.70 10.71 16 18 O -0.54 -14.26 14.82 -3.08 -0.05 -14.31 16 19 N -0.55 -8.23 3.14 -627.66 -1.97 -10.20 16 20 C 0.18 2.84 6.60 38.12 0.25 3.09 16 21 C -0.12 -1.11 9.40 22.39 0.21 -0.90 16 22 C -0.08 -0.75 10.02 22.29 0.22 -0.53 16 23 C 0.03 0.47 7.30 22.42 0.16 0.64 16 24 F -0.14 -2.66 17.18 44.97 0.77 -1.89 16 25 C 0.08 1.65 7.30 22.39 0.16 1.81 16 26 F -0.14 -3.41 17.18 44.97 0.77 -2.63 16 27 C -0.18 -3.78 9.26 22.43 0.21 -3.58 16 28 C 0.11 1.11 5.63 86.83 0.49 1.60 16 29 H 0.26 15.46 7.22 -92.71 -0.67 14.79 16 30 H 0.01 0.29 8.01 -2.39 -0.02 0.27 16 31 H 0.00 0.21 8.01 -2.39 -0.02 0.19 16 32 H 0.06 2.42 8.13 -2.39 -0.02 2.40 16 33 H 0.07 2.51 8.13 -2.38 -0.02 2.49 16 34 H 0.14 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.12 1.89 7.89 -2.39 -0.02 1.88 16 36 H 0.18 0.45 7.01 -2.91 -0.02 0.43 16 37 H 0.19 0.56 8.06 -2.91 -0.02 0.54 16 38 H 0.16 3.88 5.26 -2.91 -0.02 3.87 16 39 H 0.10 1.24 6.96 -2.39 -0.02 1.23 16 40 H 0.14 0.50 7.70 -2.39 -0.02 0.48 16 Total: -1.00 -72.79 354.41 7.18 -65.61 By element: Atomic # 1 Polarization: 2.28 SS G_CDS: 1.20 Total: 3.48 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 4.30 Total: -8.27 kcal Atomic # 7 Polarization: -63.54 SS G_CDS: -1.68 Total: -65.22 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -0.24 Total: -40.77 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 1.55 Total: -4.52 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.05 Total: 49.69 kcal Total: -72.79 7.18 -65.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000859916007.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -136.847 kcal (2) G-P(sol) polarization free energy of solvation -72.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds