Wall clock time and date at job start Tue Mar 31 2020 22:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47502 * 49.87851 * 3 2 1 5 5 C 1.36931 * 119.99924 * 273.26078 * 4 3 2 6 6 H 1.08003 * 119.99846 * 186.69023 * 5 4 3 7 7 C 1.38808 * 120.00461 * 6.69049 * 5 4 3 8 8 N 1.31628 * 119.99775 * 25.19063 * 7 5 4 9 9 Si 1.86800 * 120.00445 * 205.18972 * 7 5 4 10 10 H 1.48502 * 109.46873 * 60.00227 * 9 7 5 11 11 H 1.48496 * 109.47039 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.46914 * 300.00301 * 9 7 5 13 13 S 1.65603 * 119.99702 * 93.25898 * 4 3 2 14 14 O 1.42101 * 106.39833 * 156.45922 * 13 4 3 15 15 O 1.42101 * 106.40154 * 23.54354 * 13 4 3 16 16 C 1.76195 * 107.21904 * 270.00087 * 13 4 3 17 17 C 1.38265 * 119.98829 * 90.00127 * 16 13 4 18 18 C 1.38229 * 120.05222 * 180.02562 * 17 16 13 19 19 C 1.38218 * 120.02440 * 0.25701 * 18 17 16 20 20 C 1.50701 * 120.01200 * 179.74713 * 19 18 17 21 21 C 1.52994 * 109.46995 * 359.97438 * 20 19 18 22 22 C 1.52996 * 109.47294 * 119.99737 * 20 19 18 23 23 C 1.52996 * 109.46898 * 239.99718 * 20 19 18 24 24 C 1.38441 * 119.97494 * 359.49001 * 19 18 17 25 25 F 1.35097 * 120.02658 * 180.25271 * 24 19 18 26 26 C 1.38182 * 119.98737 * 270.02669 * 16 13 4 27 27 H 4.40643 * 5.51444 * 180.02562 * 4 1 2 28 28 H 1.09008 * 109.47047 * 289.87508 * 3 2 1 29 29 H 1.09003 * 109.46488 * 169.87949 * 3 2 1 30 30 H 0.96996 * 120.00108 * 179.97438 * 8 7 5 31 31 H 1.07998 * 119.97311 * 0.02562 * 17 16 13 32 32 H 1.07995 * 119.98540 * 179.97438 * 18 17 16 33 33 H 1.09003 * 109.47021 * 60.00727 * 21 20 19 34 34 H 1.09008 * 109.47216 * 180.02562 * 21 20 19 35 35 H 1.08995 * 109.47582 * 300.00484 * 21 20 19 36 36 H 1.09001 * 109.47212 * 59.99620 * 22 20 19 37 37 H 1.09002 * 109.47370 * 179.97438 * 22 20 19 38 38 H 1.08995 * 109.47163 * 300.00269 * 22 20 19 39 39 H 1.09000 * 109.47577 * 60.00101 * 23 20 19 40 40 H 1.09000 * 109.47443 * 179.97438 * 23 20 19 41 41 H 1.09004 * 109.47617 * 299.99900 * 23 20 19 42 42 H 1.08003 * 120.00855 * 359.95086 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.8892 -1.0561 5 6 3.3001 -2.2249 -0.8040 6 1 3.7610 -2.8613 -1.5449 7 6 2.8752 -2.7610 0.4039 8 7 1.9120 -2.1737 1.0821 9 14 3.6703 -4.3159 1.0669 10 1 5.1227 -4.0814 1.2695 11 1 3.0417 -4.6797 2.3621 12 1 3.4784 -5.4227 0.0957 13 16 3.4874 -0.2796 -2.5550 14 8 4.4132 -1.1806 -3.1469 15 8 3.7575 1.1035 -2.3722 16 6 2.0145 -0.3761 -3.5171 17 6 1.1226 0.6805 -3.5232 18 6 -0.0336 0.6059 -4.2771 19 6 -0.3020 -0.5273 -5.0216 20 6 -1.5654 -0.6105 -5.8389 21 6 -2.3682 0.6808 -5.6696 22 6 -1.2069 -0.7991 -7.3142 23 6 -2.4039 -1.7981 -5.3620 24 6 0.5928 -1.5837 -5.0203 25 9 0.3340 -2.6897 -5.7516 26 6 1.7508 -1.5079 -4.2647 27 1 -1.0499 -0.0001 -0.0004 28 1 3.0095 -0.3486 0.9665 29 1 3.0088 1.0126 -0.1806 30 1 1.6149 -2.5485 1.9259 31 1 1.3295 1.5646 -2.9386 32 1 -0.7297 1.4316 -4.2808 33 1 -1.7710 1.5270 -6.0092 34 1 -3.2823 0.6204 -6.2604 35 1 -2.6236 0.8148 -4.6185 36 1 -0.6350 -1.7192 -7.4345 37 1 -2.1207 -0.8597 -7.9053 38 1 -0.6095 0.0469 -7.6539 39 1 -2.6593 -1.6639 -4.3109 40 1 -3.3179 -1.8581 -5.9528 41 1 -1.8321 -2.7183 -5.4822 42 1 2.4479 -2.3328 -4.2600 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867226993.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:07 Heat of formation + Delta-G solvation = -29.261844 kcal Electronic energy + Delta-G solvation = -28381.587486 eV Core-core repulsion = 24370.408626 eV Total energy + Delta-G solvation = -4011.178860 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -48.64551 -39.26592 -36.41899 -36.24332 -35.93933 -34.51102 -32.11768 -31.21229 -30.43286 -29.69992 -27.46032 -27.28566 -26.67213 -23.94545 -23.20953 -22.16453 -19.42609 -18.69629 -18.23712 -17.60741 -16.71089 -16.47573 -16.14766 -15.70061 -15.35300 -15.17537 -14.72687 -14.43360 -14.27922 -13.94223 -13.63857 -13.49119 -13.40379 -13.05567 -12.65539 -12.54307 -12.32432 -12.01617 -11.92638 -11.91006 -11.66856 -11.46777 -11.31339 -11.04194 -11.00263 -10.88649 -10.84081 -10.83117 -10.61146 -10.55058 -10.36807 -9.94967 -9.63734 -9.30016 -8.94928 -8.70698 -8.39216 -8.32183 -6.69523 -4.04534 1.18632 1.58038 1.64601 3.05050 3.09766 3.16818 3.63060 3.84211 3.93871 4.11018 4.47302 4.50170 4.56571 4.62024 4.77808 4.93230 5.01628 5.10116 5.24985 5.44344 5.50837 5.55937 5.57691 5.64803 5.71334 5.78337 5.81110 5.84738 5.92443 5.99022 6.01493 6.21227 6.22548 6.27264 6.41149 6.44162 6.60580 6.64998 6.69199 6.92113 7.07061 7.17835 7.25941 8.06813 8.46240 8.84362 8.89434 10.21391 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013512 B = 0.004459 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.688498 B = 6277.737908 C = 6471.709525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.113 4.113 3 C 0.233 3.767 4 N -0.790 5.790 5 C -0.239 4.239 6 H 0.124 0.876 7 C 0.029 3.971 8 N -0.813 5.813 9 Si 0.933 3.067 10 H -0.265 1.265 11 H -0.280 1.280 12 H -0.267 1.267 13 S 2.521 3.479 14 O -0.981 6.981 15 O -0.995 6.995 16 C -0.632 4.632 17 C -0.035 4.035 18 C -0.121 4.121 19 C -0.078 4.078 20 C -0.028 4.028 21 C -0.142 4.142 22 C -0.145 4.145 23 C -0.144 4.144 24 C 0.072 3.928 25 F -0.141 7.141 26 C -0.056 4.056 27 H 0.195 0.805 28 H 0.117 0.883 29 H 0.083 0.917 30 H 0.278 0.722 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.059 0.941 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.058 0.942 41 H 0.064 0.936 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.534 2.452 -5.970 9.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.115 4.115 3 C 0.108 3.892 4 N -0.611 5.611 5 C -0.388 4.388 6 H 0.142 0.858 7 C -0.185 4.185 8 N -0.451 5.451 9 Si 0.757 3.243 10 H -0.190 1.190 11 H -0.205 1.205 12 H -0.192 1.192 13 S 2.619 3.381 14 O -0.971 6.971 15 O -0.985 6.985 16 C -0.708 4.708 17 C -0.054 4.054 18 C -0.140 4.140 19 C -0.079 4.079 20 C -0.028 4.028 21 C -0.199 4.199 22 C -0.202 4.202 23 C -0.202 4.202 24 C 0.053 3.947 25 F -0.120 7.120 26 C -0.076 4.076 27 H 0.212 0.788 28 H 0.134 0.866 29 H 0.101 0.899 30 H 0.089 0.911 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.077 0.923 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.855 2.946 -6.393 9.825 hybrid contribution -1.145 -1.211 0.010 1.667 sum -8.000 1.735 -6.382 10.380 Atomic orbital electron populations 1.24170 0.95257 1.05789 1.03066 1.23357 0.94519 0.95664 0.98002 1.18539 0.83950 0.92804 0.93956 1.55574 1.71174 1.15413 1.18921 1.20192 1.30456 0.85976 1.02139 0.85817 1.25656 0.95115 0.99696 0.97999 1.70229 1.20854 1.39034 1.14997 0.85868 0.79885 0.80179 0.78336 1.19000 1.20540 1.19225 1.12290 0.78602 0.73780 0.73462 1.93355 1.62122 1.64326 1.77283 1.93343 1.85732 1.33905 1.85506 1.32532 1.26788 0.98679 1.12834 1.20869 0.92118 0.97055 0.95362 1.21095 0.97881 0.97362 0.97661 1.19911 0.95483 0.93767 0.98760 1.19471 0.91963 0.96744 0.94646 1.21955 0.99496 0.96359 1.02114 1.21946 1.01615 1.02654 0.93977 1.21936 0.99268 0.97686 1.01277 1.17593 0.96470 0.84119 0.96548 1.91392 1.94003 1.51215 1.75388 1.20815 0.95104 0.98056 0.93600 0.78774 0.86552 0.89907 0.91061 0.84823 0.84939 0.92161 0.92325 0.92022 0.91638 0.92281 0.92568 0.92387 0.92325 0.91657 0.83959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.27 19.25 29.55 0.57 -4.70 16 2 C -0.11 -2.42 11.25 -37.12 -0.42 -2.84 16 3 C 0.23 4.99 5.45 -6.83 -0.04 4.95 16 4 N -0.79 -18.11 2.88 -62.77 -0.18 -18.29 16 5 C -0.24 -5.62 9.48 -15.06 -0.14 -5.76 16 6 H 0.12 2.89 7.22 -52.48 -0.38 2.51 16 7 C 0.03 0.65 4.92 -17.43 -0.09 0.56 16 8 N -0.81 -18.58 8.96 55.49 0.50 -18.08 16 9 Si 0.93 17.83 29.62 -169.99 -5.04 12.79 16 10 H -0.27 -5.05 7.11 56.52 0.40 -4.65 16 11 H -0.28 -5.30 7.11 56.52 0.40 -4.89 16 12 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 13 S 2.52 57.66 5.65 -107.50 -0.61 57.05 16 14 O -0.98 -24.46 16.06 -57.17 -0.92 -25.38 16 15 O -1.00 -23.62 15.85 -57.17 -0.91 -24.52 16 16 C -0.63 -13.21 5.97 -39.59 -0.24 -13.44 16 17 C -0.03 -0.65 9.52 -39.57 -0.38 -1.03 16 18 C -0.12 -1.96 8.97 -39.59 -0.36 -2.32 16 19 C -0.08 -1.26 4.76 -104.55 -0.50 -1.76 16 20 C -0.03 -0.36 0.75 -155.67 -0.12 -0.48 16 21 C -0.14 -1.50 7.13 37.15 0.26 -1.24 16 22 C -0.14 -1.72 8.26 37.16 0.31 -1.41 16 23 C -0.14 -1.80 8.26 37.16 0.31 -1.49 16 24 C 0.07 1.32 6.79 -39.42 -0.27 1.05 16 25 F -0.14 -2.44 13.38 2.25 0.03 -2.41 16 26 C -0.06 -1.13 9.50 -39.51 -0.38 -1.51 16 27 H 0.20 3.24 7.80 -54.10 -0.42 2.81 16 28 H 0.12 2.50 6.41 -51.92 -0.33 2.17 16 29 H 0.08 1.65 6.95 -51.93 -0.36 1.29 16 30 H 0.28 6.04 8.31 -40.82 -0.34 5.70 16 31 H 0.13 2.40 7.62 -52.49 -0.40 2.00 16 32 H 0.13 1.74 5.90 -52.49 -0.31 1.43 16 33 H 0.06 0.61 7.51 -51.93 -0.39 0.22 16 34 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 35 H 0.06 0.65 7.51 -51.93 -0.39 0.26 16 36 H 0.06 0.85 6.29 -51.93 -0.33 0.52 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.89 6.33 -51.93 -0.33 0.56 16 42 H 0.14 2.86 7.62 -52.48 -0.40 2.46 16 LS Contribution 360.19 15.07 5.43 5.43 Total: -1.00 -27.73 360.19 -8.44 -36.17 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -5.29 Total: 8.65 kcal Atomic # 6 Polarization: -29.95 SS G_CDS: -1.46 Total: -31.41 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.32 Total: -36.37 kcal Atomic # 8 Polarization: -48.08 SS G_CDS: -1.82 Total: -49.90 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.03 Total: -2.41 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.04 Total: 12.79 kcal Atomic # 16 Polarization: 57.66 SS G_CDS: -0.61 Total: 57.05 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -27.73 -8.44 -36.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867226993.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.909 kcal (2) G-P(sol) polarization free energy of solvation -27.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds