Wall clock time and date at job start Tue Mar 31 2020 22:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47502 * 49.87851 * 3 2 1 5 5 C 1.36931 * 119.99924 * 273.26078 * 4 3 2 6 6 H 1.08003 * 119.99846 * 186.69023 * 5 4 3 7 7 C 1.38808 * 120.00461 * 6.69049 * 5 4 3 8 8 N 1.31628 * 119.99775 * 25.19063 * 7 5 4 9 9 Si 1.86800 * 120.00445 * 205.18972 * 7 5 4 10 10 H 1.48502 * 109.46873 * 60.00227 * 9 7 5 11 11 H 1.48496 * 109.47039 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.46914 * 300.00301 * 9 7 5 13 13 S 1.65603 * 119.99702 * 93.25898 * 4 3 2 14 14 O 1.42101 * 106.39833 * 156.45922 * 13 4 3 15 15 O 1.42101 * 106.40154 * 23.54354 * 13 4 3 16 16 C 1.76195 * 107.21904 * 270.00087 * 13 4 3 17 17 C 1.38265 * 119.98829 * 90.00127 * 16 13 4 18 18 C 1.38229 * 120.05222 * 180.02562 * 17 16 13 19 19 C 1.38218 * 120.02440 * 0.25701 * 18 17 16 20 20 C 1.50701 * 120.01200 * 179.74713 * 19 18 17 21 21 C 1.52994 * 109.46995 * 359.97438 * 20 19 18 22 22 C 1.52996 * 109.47294 * 119.99737 * 20 19 18 23 23 C 1.52996 * 109.46898 * 239.99718 * 20 19 18 24 24 C 1.38441 * 119.97494 * 359.49001 * 19 18 17 25 25 F 1.35097 * 120.02658 * 180.25271 * 24 19 18 26 26 C 1.38182 * 119.98737 * 270.02669 * 16 13 4 27 27 H 4.40643 * 5.51444 * 180.02562 * 4 1 2 28 28 H 1.09008 * 109.47047 * 289.87508 * 3 2 1 29 29 H 1.09003 * 109.46488 * 169.87949 * 3 2 1 30 30 H 0.96996 * 120.00108 * 179.97438 * 8 7 5 31 31 H 1.07998 * 119.97311 * 0.02562 * 17 16 13 32 32 H 1.07995 * 119.98540 * 179.97438 * 18 17 16 33 33 H 1.09003 * 109.47021 * 60.00727 * 21 20 19 34 34 H 1.09008 * 109.47216 * 180.02562 * 21 20 19 35 35 H 1.08995 * 109.47582 * 300.00484 * 21 20 19 36 36 H 1.09001 * 109.47212 * 59.99620 * 22 20 19 37 37 H 1.09002 * 109.47370 * 179.97438 * 22 20 19 38 38 H 1.08995 * 109.47163 * 300.00269 * 22 20 19 39 39 H 1.09000 * 109.47577 * 60.00101 * 23 20 19 40 40 H 1.09000 * 109.47443 * 179.97438 * 23 20 19 41 41 H 1.09004 * 109.47617 * 299.99900 * 23 20 19 42 42 H 1.08003 * 120.00855 * 359.95086 * 26 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -0.8892 -1.0561 5 6 3.3001 -2.2249 -0.8040 6 1 3.7610 -2.8613 -1.5449 7 6 2.8752 -2.7610 0.4039 8 7 1.9120 -2.1737 1.0821 9 14 3.6703 -4.3159 1.0669 10 1 5.1227 -4.0814 1.2695 11 1 3.0417 -4.6797 2.3621 12 1 3.4784 -5.4227 0.0957 13 16 3.4874 -0.2796 -2.5550 14 8 4.4132 -1.1806 -3.1469 15 8 3.7575 1.1035 -2.3722 16 6 2.0145 -0.3761 -3.5171 17 6 1.1226 0.6805 -3.5232 18 6 -0.0336 0.6059 -4.2771 19 6 -0.3020 -0.5273 -5.0216 20 6 -1.5654 -0.6105 -5.8389 21 6 -2.3682 0.6808 -5.6696 22 6 -1.2069 -0.7991 -7.3142 23 6 -2.4039 -1.7981 -5.3620 24 6 0.5928 -1.5837 -5.0203 25 9 0.3340 -2.6897 -5.7516 26 6 1.7508 -1.5079 -4.2647 27 1 -1.0499 -0.0001 -0.0004 28 1 3.0095 -0.3486 0.9665 29 1 3.0088 1.0126 -0.1806 30 1 1.6149 -2.5485 1.9259 31 1 1.3295 1.5646 -2.9386 32 1 -0.7297 1.4316 -4.2808 33 1 -1.7710 1.5270 -6.0092 34 1 -3.2823 0.6204 -6.2604 35 1 -2.6236 0.8148 -4.6185 36 1 -0.6350 -1.7192 -7.4345 37 1 -2.1207 -0.8597 -7.9053 38 1 -0.6095 0.0469 -7.6539 39 1 -2.6593 -1.6639 -4.3109 40 1 -3.3179 -1.8581 -5.9528 41 1 -1.8321 -2.7183 -5.4822 42 1 2.4479 -2.3328 -4.2600 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867226993.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:06 Heat of formation + Delta-G solvation = -43.413675 kcal Electronic energy + Delta-G solvation = -28382.201155 eV Core-core repulsion = 24370.408626 eV Total energy + Delta-G solvation = -4011.792529 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -50.05698 -40.56638 -38.12329 -37.84112 -37.43081 -36.43415 -33.79954 -32.88965 -31.84584 -31.08915 -28.37909 -28.33445 -28.22214 -25.68246 -24.60494 -23.57746 -20.58805 -20.39917 -19.87906 -19.22046 -18.45993 -18.12965 -17.61857 -17.07166 -16.76041 -16.57373 -16.42614 -16.11870 -15.31001 -15.21829 -15.20054 -15.01261 -14.65758 -14.40897 -14.24739 -14.03517 -13.57664 -13.42675 -13.14844 -13.10315 -12.92380 -12.86905 -12.70459 -12.65051 -12.61108 -12.59242 -12.32479 -12.10964 -11.99680 -11.95744 -11.72675 -11.54101 -11.23037 -10.93576 -10.57145 -10.17121 -10.07578 -9.78156 -8.38975 -5.83894 -0.34514 -0.06835 0.11718 1.49597 1.54708 1.63528 2.01163 2.33539 2.34582 2.48506 2.79208 2.88868 3.14082 3.22186 3.40544 3.53370 3.78819 3.94812 4.00335 4.00574 4.13683 4.25408 4.31029 4.53676 4.56429 4.70056 4.70172 4.81263 4.83301 4.91806 4.96218 4.96439 4.97725 5.07667 5.12971 5.15023 5.23980 5.30274 5.33765 5.41535 5.44830 5.52543 5.82950 6.32040 6.71891 7.14158 7.25036 8.51984 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013512 B = 0.004459 C = 0.004325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.688498 B = 6277.737908 C = 6471.709525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.147 4.147 3 C 0.233 3.767 4 N -0.801 5.801 5 C -0.274 4.274 6 H 0.113 0.887 7 C 0.004 3.996 8 N -0.830 5.830 9 Si 0.987 3.013 10 H -0.265 1.265 11 H -0.272 1.272 12 H -0.270 1.270 13 S 2.540 3.460 14 O -1.009 7.009 15 O -1.008 7.008 16 C -0.653 4.653 17 C -0.043 4.043 18 C -0.112 4.112 19 C -0.067 4.067 20 C -0.030 4.030 21 C -0.142 4.142 22 C -0.144 4.144 23 C -0.144 4.144 24 C 0.065 3.935 25 F -0.138 7.138 26 C -0.078 4.078 27 H 0.227 0.773 28 H 0.111 0.889 29 H 0.091 0.909 30 H 0.281 0.719 31 H 0.139 0.861 32 H 0.172 0.828 33 H 0.066 0.934 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.084 0.916 38 H 0.056 0.944 39 H 0.052 0.948 40 H 0.085 0.915 41 H 0.046 0.954 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.317 3.191 -6.746 12.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.150 4.150 3 C 0.108 3.892 4 N -0.622 5.622 5 C -0.421 4.421 6 H 0.130 0.870 7 C -0.207 4.207 8 N -0.467 5.467 9 Si 0.810 3.190 10 H -0.189 1.189 11 H -0.197 1.197 12 H -0.194 1.194 13 S 2.641 3.359 14 O -0.999 6.999 15 O -0.998 6.998 16 C -0.734 4.734 17 C -0.063 4.063 18 C -0.130 4.130 19 C -0.068 4.068 20 C -0.030 4.030 21 C -0.198 4.198 22 C -0.201 4.201 23 C -0.201 4.201 24 C 0.045 3.955 25 F -0.117 7.117 26 C -0.099 4.099 27 H 0.243 0.757 28 H 0.128 0.872 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.157 0.843 32 H 0.189 0.811 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.103 0.897 38 H 0.075 0.925 39 H 0.071 0.929 40 H 0.104 0.896 41 H 0.066 0.934 42 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -9.613 3.677 -7.128 12.520 hybrid contribution -0.391 -1.372 0.095 1.430 sum -10.005 2.305 -7.033 12.444 Atomic orbital electron populations 1.24923 0.96086 1.04272 1.01514 1.23513 0.94961 0.97063 0.99433 1.18505 0.84629 0.92747 0.93288 1.55272 1.72446 1.15428 1.19103 1.20198 1.32630 0.86230 1.03009 0.86978 1.26248 0.95112 1.01882 0.97503 1.70292 1.21286 1.39978 1.15183 0.85067 0.79031 0.77130 0.77799 1.18943 1.19671 1.19449 1.10991 0.78419 0.72982 0.73475 1.93314 1.63540 1.65114 1.77958 1.93315 1.86216 1.34334 1.85925 1.32061 1.26649 1.00231 1.14438 1.21078 0.92744 0.96501 0.95937 1.21501 0.97222 0.98315 0.95938 1.20424 0.96072 0.92483 0.97807 1.19647 0.90477 0.98460 0.94466 1.21974 1.00131 0.94855 1.02883 1.21951 1.02717 1.01852 0.93602 1.21942 1.00059 0.96611 1.01504 1.17698 0.96361 0.85015 0.96442 1.91401 1.93902 1.51170 1.75178 1.20815 0.96265 0.97834 0.94938 0.75675 0.87154 0.89150 0.90835 0.84274 0.81057 0.91454 0.90059 0.91729 0.93303 0.89666 0.92465 0.92910 0.89619 0.93448 0.85266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.58 19.25 74.32 1.43 -8.15 16 2 C -0.15 -6.29 11.25 31.12 0.35 -5.94 16 3 C 0.23 10.23 5.45 84.57 0.46 10.69 16 4 N -0.80 -37.97 2.88 -352.51 -1.02 -38.98 16 5 C -0.27 -13.37 9.48 84.03 0.80 -12.57 16 6 H 0.11 5.57 7.22 -2.91 -0.02 5.55 16 7 C 0.00 0.18 4.92 84.86 0.42 0.60 16 8 N -0.83 -38.21 8.96 21.65 0.19 -38.02 16 9 Si 0.99 36.92 29.62 68.60 2.03 38.95 16 10 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 11 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 12 H -0.27 -10.09 7.11 99.48 0.71 -9.38 16 13 S 2.54 120.17 5.65 -56.49 -0.32 119.85 16 14 O -1.01 -52.67 16.06 -128.00 -2.06 -54.72 16 15 O -1.01 -48.80 15.85 -128.00 -2.03 -50.83 16 16 C -0.65 -27.76 5.97 22.26 0.13 -27.62 16 17 C -0.04 -1.58 9.52 22.27 0.21 -1.37 16 18 C -0.11 -3.31 8.97 22.26 0.20 -3.11 16 19 C -0.07 -2.01 4.76 -19.82 -0.09 -2.10 16 20 C -0.03 -0.68 0.75 -52.93 -0.04 -0.72 16 21 C -0.14 -2.31 7.13 71.98 0.51 -1.80 16 22 C -0.14 -2.97 8.26 71.98 0.59 -2.37 16 23 C -0.14 -3.16 8.26 71.98 0.59 -2.56 16 24 C 0.06 2.33 6.79 22.38 0.15 2.49 16 25 F -0.14 -4.74 13.38 44.97 0.60 -4.14 16 26 C -0.08 -3.27 9.50 22.31 0.21 -3.06 16 27 H 0.23 6.83 7.80 -4.42 -0.03 6.80 16 28 H 0.11 4.90 6.41 -2.38 -0.02 4.89 16 29 H 0.09 3.70 6.95 -2.39 -0.02 3.68 16 30 H 0.28 12.18 8.31 -92.71 -0.77 11.41 16 31 H 0.14 4.86 7.62 -2.91 -0.02 4.84 16 32 H 0.17 3.72 5.90 -2.91 -0.02 3.70 16 33 H 0.07 1.03 7.51 -2.39 -0.02 1.01 16 34 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.06 1.04 7.51 -2.39 -0.02 1.02 16 36 H 0.05 1.17 6.29 -2.39 -0.02 1.15 16 37 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 38 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.05 1.20 6.33 -2.38 -0.02 1.19 16 42 H 0.13 5.55 7.62 -2.91 -0.02 5.53 16 Total: -1.00 -60.60 360.19 4.38 -56.22 By element: Atomic # 1 Polarization: 28.24 SS G_CDS: 1.04 Total: 29.28 kcal Atomic # 6 Polarization: -63.54 SS G_CDS: 5.93 Total: -57.60 kcal Atomic # 7 Polarization: -76.18 SS G_CDS: -0.82 Total: -77.00 kcal Atomic # 8 Polarization: -101.47 SS G_CDS: -4.08 Total: -105.56 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.60 Total: -4.14 kcal Atomic # 14 Polarization: 36.92 SS G_CDS: 2.03 Total: 38.95 kcal Atomic # 16 Polarization: 120.17 SS G_CDS: -0.32 Total: 119.85 kcal Total: -60.60 4.38 -56.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867226993.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.810 kcal (2) G-P(sol) polarization free energy of solvation -60.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds