Wall clock time and date at job start Tue Mar 31 2020 22:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47032 * 2 1 4 4 C 1.52997 * 109.47018 * 240.00019 * 2 1 3 5 5 C 1.50700 * 109.46995 * 120.00066 * 2 1 3 6 6 C 1.38125 * 119.54369 * 74.98141 * 5 2 1 7 7 C 1.39837 * 119.03333 * 179.70268 * 6 5 2 8 8 C 1.48146 * 120.91666 * 180.29662 * 7 6 5 9 9 O 1.21518 * 120.00189 * 0.25884 * 8 7 6 10 10 N 1.34780 * 119.99865 * 180.26530 * 8 7 6 11 11 C 1.46502 * 119.99673 * 179.97438 * 10 8 7 12 12 C 1.50700 * 109.46998 * 179.97438 * 11 10 8 13 13 O 1.21299 * 119.99873 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00324 * 179.97438 * 12 11 10 15 15 C 1.37098 * 120.00118 * 180.02562 * 14 12 11 16 16 H 1.07999 * 120.00271 * 359.97438 * 15 14 12 17 17 C 1.38955 * 120.00027 * 180.02562 * 15 14 12 18 18 N 1.31417 * 119.99848 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00127 * 179.97438 * 17 15 14 20 20 H 1.48494 * 109.47010 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47292 * 120.00302 * 19 17 15 22 22 H 1.48502 * 109.47039 * 240.00223 * 19 17 15 23 23 C 1.39778 * 118.16774 * 0.55323 * 7 6 5 24 24 C 1.38311 * 118.99066 * 359.48364 * 23 7 6 25 25 Cl 1.73593 * 119.56884 * 180.25362 * 24 23 7 26 26 N 1.31824 * 119.54220 * 254.99601 * 5 2 1 27 27 H 1.09002 * 109.47002 * 299.99992 * 1 2 3 28 28 H 1.09002 * 109.47559 * 60.00055 * 1 2 3 29 29 H 1.08998 * 109.46977 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47505 * 179.97438 * 3 2 1 31 31 H 1.09002 * 109.47550 * 299.99958 * 3 2 1 32 32 H 1.09002 * 109.47220 * 60.00142 * 3 2 1 33 33 H 1.08998 * 109.47074 * 299.99729 * 4 2 1 34 34 H 1.09002 * 109.47384 * 59.99991 * 4 2 1 35 35 H 1.09004 * 109.47301 * 179.97438 * 4 2 1 36 36 H 1.08004 * 120.48676 * 0.02562 * 6 5 2 37 37 H 0.96993 * 119.99872 * 359.97438 * 10 8 7 38 38 H 1.09001 * 109.47493 * 299.99648 * 11 10 8 39 39 H 1.08997 * 109.47551 * 60.00061 * 11 10 8 40 40 H 0.96996 * 119.99988 * 0.02562 * 14 12 11 41 41 H 0.96998 * 120.00142 * 179.97438 * 18 17 15 42 42 H 1.08002 * 120.50817 * 179.76776 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.9657 -2.0885 1.2961 7 6 2.4406 -2.7371 2.4403 8 6 2.3955 -4.2137 2.5523 9 8 1.9455 -4.8787 1.6402 10 7 2.8534 -4.8194 3.6658 11 6 2.8081 -6.2795 3.7767 12 6 3.3759 -6.6999 5.1079 13 8 3.7782 -5.8623 5.8875 14 7 3.4357 -8.0066 5.4326 15 6 3.9517 -8.3890 6.6438 16 1 4.3107 -7.6433 7.3376 17 6 4.0138 -9.7363 6.9784 18 7 3.5774 -10.6438 6.1340 19 14 4.7176 -10.2574 8.6284 20 1 5.1369 -9.0537 9.3901 21 1 3.6830 -10.9948 9.3972 22 1 5.8929 -11.1382 8.4093 23 6 2.9541 -1.9537 3.4778 24 6 2.9822 -0.5789 3.3288 25 17 3.6228 0.4081 4.6051 26 7 2.5289 -0.0080 2.2294 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6767 -1.7489 -1.2492 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7209 -1.2495 36 1 1.5577 -2.6572 0.4736 37 1 3.2128 -4.2885 4.3937 38 1 1.7750 -6.6180 3.6988 39 1 3.3974 -6.7233 2.9744 40 1 3.1136 -8.6764 4.8094 41 1 3.6211 -11.5843 6.3674 42 1 3.3275 -2.4150 4.3801 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000868315031.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:10 Heat of formation + Delta-G solvation = -58.453873 kcal Electronic energy + Delta-G solvation = -26059.453285 eV Core-core repulsion = 22064.884819 eV Total energy + Delta-G solvation = -3994.568466 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.18562 -39.54466 -38.20074 -37.36581 -36.42723 -34.67437 -33.88251 -33.01029 -31.45471 -30.68851 -28.21158 -27.61498 -27.49895 -25.19091 -24.41023 -23.56611 -21.28486 -19.92201 -19.48586 -18.34030 -17.94399 -17.05906 -16.26809 -15.97822 -15.61712 -15.57564 -15.30645 -15.05145 -14.94253 -14.53725 -14.19372 -14.14853 -14.00356 -13.81142 -13.48188 -12.80628 -12.54283 -12.42066 -12.25903 -12.13408 -11.97427 -11.84150 -11.69430 -11.59020 -11.56504 -11.24471 -11.19005 -11.15445 -10.45815 -10.44483 -10.35078 -10.21209 -9.82139 -9.71318 -9.19743 -9.04248 -8.73225 -8.17271 -6.57828 -4.00014 0.35274 0.55708 1.49522 2.65583 2.97027 3.05930 3.19443 3.26199 3.42047 3.65428 3.73396 4.04867 4.27680 4.41152 4.57059 4.62563 4.67076 4.68150 4.77454 4.88118 5.10496 5.12381 5.26454 5.28886 5.39720 5.45854 5.57944 5.59939 5.63332 5.70029 5.78252 5.81924 5.82483 5.94968 5.95510 6.04836 6.13555 6.40994 7.34691 7.40548 7.50192 7.84406 8.10242 8.37211 8.98003 9.31372 9.78539 10.58908 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018596 B = 0.002263 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.344448 B =12367.844253 C =13676.825532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.018 4.018 3 C -0.128 4.128 4 C -0.145 4.145 5 C 0.155 3.845 6 C -0.109 4.109 7 C -0.065 4.065 8 C 0.556 3.444 9 O -0.532 6.532 10 N -0.695 5.695 11 C 0.108 3.892 12 C 0.425 3.575 13 O -0.597 6.597 14 N -0.546 5.546 15 C -0.305 4.305 16 H 0.107 0.893 17 C 0.026 3.974 18 N -0.893 5.893 19 Si 0.933 3.067 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.280 1.280 23 C -0.129 4.129 24 C 0.175 3.825 25 Cl -0.023 7.023 26 N -0.458 5.458 27 H 0.059 0.941 28 H 0.067 0.933 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.156 0.844 37 H 0.412 0.588 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.396 0.604 41 H 0.274 0.726 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.344 19.757 -12.476 23.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.019 4.019 3 C -0.186 4.186 4 C -0.202 4.202 5 C 0.016 3.984 6 C -0.130 4.130 7 C -0.076 4.076 8 C 0.341 3.659 9 O -0.410 6.410 10 N -0.349 5.349 11 C -0.020 4.020 12 C 0.211 3.789 13 O -0.484 6.484 14 N -0.181 5.181 15 C -0.435 4.435 16 H 0.125 0.875 17 C -0.177 4.177 18 N -0.533 5.533 19 Si 0.760 3.240 20 H -0.191 1.191 21 H -0.206 1.206 22 H -0.206 1.206 23 C -0.150 4.150 24 C 0.011 3.989 25 Cl 0.006 6.994 26 N -0.170 5.170 27 H 0.078 0.922 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.079 0.921 36 H 0.174 0.826 37 H 0.251 0.749 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.230 0.770 41 H 0.084 0.916 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.288 20.547 -12.482 24.420 hybrid contribution 0.419 -1.410 1.132 1.856 sum -3.869 19.136 -11.350 22.583 Atomic orbital electron populations 1.21907 0.92643 1.02601 1.02596 1.19559 0.96135 0.96094 0.90101 1.21699 1.01329 0.93601 1.01961 1.21993 1.01610 1.00620 0.96020 1.21053 0.93962 0.89874 0.93485 1.22168 0.97823 0.94862 0.98156 1.20357 0.98650 0.94037 0.94547 1.17932 0.78836 0.86357 0.82743 1.90784 1.46037 1.65363 1.38820 1.45621 1.62071 1.08186 1.18995 1.21050 1.02682 0.80020 0.98210 1.19664 0.86611 0.84062 0.88563 1.90506 1.54566 1.50945 1.52378 1.41792 1.53378 1.05112 1.17782 1.19788 1.37552 0.92325 0.93801 0.87536 1.25347 0.97154 0.95440 0.99761 1.69620 1.45737 1.01862 1.36085 0.85746 0.78474 0.78825 0.80998 1.19084 1.20559 1.20565 1.22140 0.99906 0.92509 1.00447 1.21465 0.98085 0.88523 0.90795 1.98427 1.83800 1.71209 1.45999 1.66674 1.09343 1.41396 0.99545 0.92188 0.91410 0.92046 0.92442 0.92570 0.91517 0.91749 0.91369 0.92149 0.82616 0.74857 0.89339 0.89346 0.76992 0.91557 0.82824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 8.40 37.16 0.31 -0.66 16 2 C -0.02 -0.14 0.87 -155.66 -0.14 -0.28 16 3 C -0.13 -0.99 7.80 37.16 0.29 -0.70 16 4 C -0.14 -0.99 8.08 37.16 0.30 -0.69 16 5 C 0.15 1.62 5.56 -82.64 -0.46 1.16 16 6 C -0.11 -1.23 8.64 -39.03 -0.34 -1.56 16 7 C -0.06 -0.82 5.91 -104.66 -0.62 -1.44 16 8 C 0.56 8.40 7.80 -12.19 -0.10 8.31 16 9 O -0.53 -9.23 16.45 5.35 0.09 -9.14 16 10 N -0.69 -10.98 5.49 -62.33 -0.34 -11.32 16 11 C 0.11 1.87 6.15 -5.19 -0.03 1.84 16 12 C 0.43 9.36 7.85 -10.99 -0.09 9.27 16 13 O -0.60 -14.70 15.24 5.54 0.08 -14.62 16 14 N -0.55 -13.10 5.29 -10.96 -0.06 -13.16 16 15 C -0.31 -8.09 9.68 -14.93 -0.14 -8.24 16 16 H 0.11 2.95 7.16 -52.49 -0.38 2.58 16 17 C 0.03 0.67 5.50 -17.46 -0.10 0.57 16 18 N -0.89 -23.34 13.05 55.50 0.72 -22.62 16 19 Si 0.93 20.16 29.55 -169.99 -5.02 15.13 16 20 H -0.27 -5.76 7.11 56.52 0.40 -5.35 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 22 H -0.28 -5.97 7.11 56.52 0.40 -5.57 16 23 C -0.13 -1.52 9.38 -38.98 -0.37 -1.89 16 24 C 0.18 2.08 7.27 -17.49 -0.13 1.95 16 25 Cl -0.02 -0.25 29.10 -51.86 -1.51 -1.76 16 26 N -0.46 -5.35 8.97 -6.67 -0.06 -5.41 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.06 0.43 8.08 -51.93 -0.42 0.01 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.58 7.85 -51.93 -0.41 0.17 16 33 H 0.06 0.44 6.70 -51.93 -0.35 0.09 16 34 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.16 1.61 6.41 -52.48 -0.34 1.27 16 37 H 0.41 6.38 5.58 -40.82 -0.23 6.15 16 38 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 40 H 0.40 9.11 7.90 -40.82 -0.32 8.79 16 41 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 42 H 0.15 1.69 6.54 -52.49 -0.34 1.35 16 LS Contribution 373.01 15.07 5.62 5.62 Total: -1.00 -29.97 373.01 -7.37 -37.33 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: -5.30 Total: 12.31 kcal Atomic # 6 Polarization: 9.23 SS G_CDS: -1.59 Total: 7.64 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: 0.26 Total: -52.52 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: 0.17 Total: -23.76 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.51 Total: -1.76 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.97 -7.37 -37.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000868315031.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.121 kcal (2) G-P(sol) polarization free energy of solvation -29.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds