Wall clock time and date at job start Tue Mar 31 2020 22:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99861 * 2 1 4 4 H 1.48495 * 109.46726 * 269.99527 * 3 2 1 5 5 H 1.48497 * 109.47092 * 29.99508 * 3 2 1 6 6 H 1.48494 * 109.47339 * 149.99642 * 3 2 1 7 7 C 1.37880 * 120.00346 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99941 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99697 * 0.27878 * 7 2 1 10 10 O 1.42897 * 110.88736 * 297.29559 * 9 7 2 11 11 C 1.55157 * 111.00399 * 61.17882 * 9 7 2 12 12 C 1.54316 * 102.94288 * 153.57221 * 11 9 7 13 13 N 1.47023 * 107.27321 * 337.80792 * 12 11 9 14 14 C 1.34774 * 125.64997 * 178.97934 * 13 12 11 15 15 O 1.21281 * 120.00002 * 175.32472 * 14 13 12 16 16 C 1.50704 * 120.00217 * 355.33317 * 14 13 12 17 17 H 1.08998 * 109.52133 * 351.95754 * 16 14 13 18 18 O 1.43070 * 109.52506 * 231.76522 * 16 14 13 19 19 C 1.43079 * 113.59006 * 298.04657 * 18 16 14 20 20 C 1.53140 * 109.15052 * 302.04655 * 19 18 16 21 21 O 1.43076 * 109.14857 * 55.31585 * 20 19 18 22 22 C 1.43067 * 113.59275 * 302.04148 * 21 20 19 23 23 H 1.08999 * 109.53060 * 298.05790 * 22 21 20 24 24 C 1.53001 * 109.57858 * 177.88932 * 22 21 20 25 25 F 1.39898 * 109.47319 * 305.85907 * 24 22 21 26 26 F 1.39894 * 109.47266 * 65.86490 * 24 22 21 27 27 F 1.39906 * 109.47108 * 185.86107 * 24 22 21 28 28 C 1.47426 * 108.70190 * 358.94239 * 13 12 11 29 29 H 0.97000 * 120.00259 * 0.02562 * 1 2 3 30 30 H 0.96709 * 113.99845 * 59.29997 * 10 9 7 31 31 H 1.08994 * 110.72118 * 271.94140 * 11 9 7 32 32 H 1.09005 * 110.71966 * 35.20777 * 11 9 7 33 33 H 1.09001 * 109.88279 * 97.22193 * 12 11 9 34 34 H 1.09001 * 109.88414 * 218.23410 * 12 11 9 35 35 H 1.08998 * 109.52514 * 182.14719 * 19 18 16 36 36 H 1.08999 * 109.57812 * 61.98428 * 19 18 16 37 37 H 1.08998 * 109.52641 * 295.41119 * 20 19 18 38 38 H 1.09007 * 109.57306 * 175.24417 * 20 19 18 39 39 H 1.09000 * 110.36327 * 265.28857 * 28 13 12 40 40 H 1.08994 * 110.36677 * 142.96943 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 -0.0052 10 8 0.4611 -2.6366 1.1776 11 6 0.3736 -2.6291 -1.2783 12 6 0.2585 -4.1567 -1.4642 13 7 1.3944 -4.7691 -0.7597 14 6 1.6420 -6.0907 -0.6684 15 8 2.6573 -6.4819 -0.1326 16 6 0.6573 -7.0826 -1.2322 17 1 -0.2484 -6.5610 -1.5414 18 8 0.3335 -8.0550 -0.2340 19 6 1.4578 -8.8260 0.2003 20 6 2.0787 -9.5335 -1.0076 21 8 2.4025 -8.5609 -2.0058 22 6 1.2783 -7.7900 -2.4402 23 1 0.5391 -8.4487 -2.8961 24 6 1.7354 -6.7485 -3.4635 25 9 2.7756 -5.9866 -2.9206 26 9 2.1855 -7.3961 -4.6189 27 9 0.6629 -5.9102 -3.7866 28 6 2.2183 -3.6979 -0.1704 29 1 -0.4850 0.8400 -0.0004 30 1 -0.1932 -1.9347 1.2973 31 1 -0.6086 -2.1852 -1.1166 32 1 0.8680 -2.1724 -2.1357 33 1 -0.6786 -4.5127 -1.0362 34 1 0.2996 -4.4052 -2.5247 35 1 1.1311 -9.5681 0.9288 36 1 2.1973 -8.1682 0.6570 37 1 1.3665 -10.2508 -1.4154 38 1 2.9850 -10.0548 -0.6994 39 1 3.0362 -3.4357 -0.8415 40 1 2.6069 -4.0082 0.7995 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869076063.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:51 Heat of formation + Delta-G solvation = -299.879044 kcal Electronic energy + Delta-G solvation = -32974.225289 eV Core-core repulsion = 27954.329186 eV Total energy + Delta-G solvation = -5019.896103 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.26203 -47.82831 -47.63060 -40.96544 -38.89435 -37.17059 -36.29299 -34.40782 -32.77561 -32.24413 -29.86551 -28.89387 -28.48216 -26.83367 -24.98457 -23.63773 -22.92470 -21.80007 -19.80209 -19.14488 -18.84727 -18.63242 -18.17919 -17.47552 -17.09859 -16.88340 -16.29572 -16.06154 -15.32727 -15.06338 -14.96520 -14.71651 -14.51665 -14.41485 -14.33268 -14.16184 -13.86949 -13.80637 -13.75257 -13.44727 -13.04206 -12.84197 -12.66217 -12.17871 -12.01202 -11.94972 -11.73515 -11.52154 -11.37503 -11.25183 -10.98613 -10.89245 -10.60162 -10.50223 -10.05329 -9.91526 -9.41822 -8.93102 -8.70667 -8.24861 -8.04325 -6.30777 -4.39076 2.17430 2.60919 2.96350 3.18984 3.26409 3.28068 3.33544 3.39053 3.65421 3.73016 4.14947 4.25093 4.33139 4.47468 4.69533 4.75159 4.82293 4.91597 4.97409 5.11275 5.45917 5.49303 5.68789 5.80278 5.84731 6.00399 6.21624 6.38907 6.41402 6.58256 6.60269 6.86028 6.90485 7.28364 7.32380 7.71068 7.95803 8.00419 8.41000 8.63956 9.28079 9.36909 10.76450 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019520 B = 0.003985 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.093342 B = 7023.931688 C = 7600.541944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.074 3.926 3 Si 0.903 3.097 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.065 0.935 9 C 0.248 3.752 10 O -0.583 6.583 11 C -0.133 4.133 12 C 0.080 3.920 13 N -0.593 5.593 14 C 0.501 3.499 15 O -0.528 6.528 16 C 0.045 3.955 17 H 0.138 0.862 18 O -0.342 6.342 19 C -0.005 4.005 20 C 0.036 3.964 21 O -0.345 6.345 22 C 0.026 3.974 23 H 0.119 0.881 24 C 0.463 3.537 25 F -0.156 7.156 26 F -0.173 7.173 27 F -0.168 7.168 28 C 0.123 3.877 29 H 0.268 0.732 30 H 0.381 0.619 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.109 0.891 36 H 0.107 0.893 37 H 0.063 0.937 38 H 0.116 0.884 39 H 0.074 0.926 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.835 -16.012 -6.092 17.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.129 4.129 3 Si 0.730 3.270 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.574 4.574 8 H 0.083 0.917 9 C 0.208 3.792 10 O -0.392 6.392 11 C -0.171 4.171 12 C -0.042 4.042 13 N -0.326 5.326 14 C 0.287 3.713 15 O -0.406 6.406 16 C -0.017 4.017 17 H 0.156 0.844 18 O -0.259 6.259 19 C -0.081 4.081 20 C -0.040 4.040 21 O -0.264 6.264 22 C -0.035 4.035 23 H 0.137 0.863 24 C 0.408 3.592 25 F -0.137 7.137 26 F -0.155 7.155 27 F -0.149 7.149 28 C 0.002 3.998 29 H 0.078 0.922 30 H 0.231 0.769 31 H 0.106 0.894 32 H 0.088 0.912 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.127 0.873 36 H 0.124 0.876 37 H 0.081 0.919 38 H 0.134 0.866 39 H 0.092 0.908 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -1.055 -16.697 -5.742 17.688 hybrid contribution -0.035 1.551 -0.370 1.595 sum -1.089 -15.146 -6.112 16.369 Atomic orbital electron populations 1.69711 1.05949 1.27679 1.50060 1.24980 0.95015 0.99509 0.93414 0.86415 0.79919 0.82394 0.78270 1.20440 1.21026 1.19673 1.21437 0.93774 0.90093 1.52124 0.91676 1.19611 0.86958 0.90668 0.82008 1.86135 1.54164 1.53851 1.45003 1.23148 1.03298 0.89508 1.01168 1.22524 0.88458 0.97478 0.95738 1.48607 1.27403 1.04591 1.51998 1.20264 0.86956 0.82435 0.81610 1.90584 1.26968 1.77798 1.45258 1.22769 1.00361 0.89921 0.88634 0.84426 1.88249 1.32467 1.48845 1.56388 1.23820 0.91021 0.96416 0.96838 1.23324 1.02381 0.89901 0.88360 1.88175 1.29228 1.50877 1.58076 1.23615 0.91980 0.93881 0.94018 0.86329 1.19940 0.76073 0.81816 0.81330 1.93312 1.58574 1.76928 1.84903 1.93207 1.89506 1.81103 1.51652 1.93171 1.55876 1.72681 1.93170 1.22401 0.93816 0.85875 0.97706 0.92191 0.76867 0.89352 0.91249 0.92178 0.91759 0.87319 0.87553 0.91904 0.86635 0.90770 0.91134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.61 10.73 55.43 0.59 -22.02 16 2 C 0.07 1.86 5.27 -17.82 -0.09 1.77 16 3 Si 0.90 20.01 29.54 -169.99 -5.02 14.99 16 4 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 7 C -0.54 -13.80 8.27 -34.44 -0.28 -14.09 16 8 H 0.07 1.68 7.79 -52.49 -0.41 1.27 16 9 C 0.25 5.90 0.88 -89.62 -0.08 5.82 16 10 O -0.58 -14.58 13.18 -35.23 -0.46 -15.05 16 11 C -0.13 -2.82 5.38 -24.90 -0.13 -2.95 16 12 C 0.08 1.45 5.97 -3.07 -0.02 1.43 16 13 N -0.59 -11.69 3.13 -170.53 -0.53 -12.22 16 14 C 0.50 9.33 4.36 -10.98 -0.05 9.29 16 15 O -0.53 -10.97 13.52 -16.28 -0.22 -11.19 16 16 C 0.05 0.66 2.95 -27.81 -0.08 0.57 16 17 H 0.14 1.77 6.26 -51.93 -0.32 1.45 16 18 O -0.34 -4.83 10.65 -58.44 -0.62 -5.45 16 19 C -0.01 -0.06 6.56 37.23 0.24 0.18 16 20 C 0.04 0.38 7.05 37.23 0.26 0.64 16 21 O -0.34 -4.74 9.58 -58.37 -0.56 -5.30 16 22 C 0.03 0.33 2.63 -26.66 -0.07 0.26 16 23 H 0.12 1.10 8.14 -51.93 -0.42 0.67 16 24 C 0.46 6.49 2.76 37.16 0.10 6.59 16 25 F -0.16 -2.71 14.63 2.25 0.03 -2.68 16 26 F -0.17 -2.32 17.31 2.25 0.04 -2.28 16 27 F -0.17 -2.20 14.00 2.25 0.03 -2.17 16 28 C 0.12 2.75 6.07 -2.53 -0.02 2.74 16 29 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 30 H 0.38 9.51 7.51 45.56 0.34 9.86 16 31 H 0.09 1.95 7.54 -51.93 -0.39 1.56 16 32 H 0.07 1.50 8.03 -51.93 -0.42 1.09 16 33 H 0.06 1.01 7.75 -51.93 -0.40 0.60 16 34 H 0.06 1.03 5.26 -51.93 -0.27 0.76 16 35 H 0.11 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.11 1.63 5.41 -51.93 -0.28 1.34 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.12 0.96 8.14 -51.92 -0.42 0.54 16 39 H 0.07 1.64 8.03 -51.93 -0.42 1.22 16 40 H 0.07 1.66 8.08 -51.93 -0.42 1.24 16 LS Contribution 328.26 15.07 4.95 4.95 Total: -1.00 -29.24 328.26 -5.81 -35.05 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -3.82 Total: 11.11 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: -0.22 Total: 12.25 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.06 Total: -34.23 kcal Atomic # 8 Polarization: -35.12 SS G_CDS: -1.87 Total: -36.99 kcal Atomic # 9 Polarization: -7.23 SS G_CDS: 0.10 Total: -7.12 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.99 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.24 -5.81 -35.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869076063.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -264.833 kcal (2) G-P(sol) polarization free energy of solvation -29.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -294.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -299.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds