Wall clock time and date at job start Tue Mar 31 2020 22:37:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86807 * 119.99861 * 2 1 4 4 H 1.48495 * 109.46726 * 269.99527 * 3 2 1 5 5 H 1.48497 * 109.47092 * 29.99508 * 3 2 1 6 6 H 1.48494 * 109.47339 * 149.99642 * 3 2 1 7 7 C 1.37880 * 120.00346 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99941 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99697 * 0.27878 * 7 2 1 10 10 O 1.42897 * 110.88736 * 297.29559 * 9 7 2 11 11 C 1.55157 * 111.00399 * 61.17882 * 9 7 2 12 12 C 1.54316 * 102.94288 * 153.57221 * 11 9 7 13 13 N 1.47023 * 107.27321 * 337.80792 * 12 11 9 14 14 C 1.34774 * 125.64997 * 178.97934 * 13 12 11 15 15 O 1.21281 * 120.00002 * 175.32472 * 14 13 12 16 16 C 1.50704 * 120.00217 * 355.33317 * 14 13 12 17 17 H 1.08998 * 109.52133 * 351.95754 * 16 14 13 18 18 O 1.43070 * 109.52506 * 231.76522 * 16 14 13 19 19 C 1.43079 * 113.59006 * 298.04657 * 18 16 14 20 20 C 1.53140 * 109.15052 * 302.04655 * 19 18 16 21 21 O 1.43076 * 109.14857 * 55.31585 * 20 19 18 22 22 C 1.43067 * 113.59275 * 302.04148 * 21 20 19 23 23 H 1.08999 * 109.53060 * 298.05790 * 22 21 20 24 24 C 1.53001 * 109.57858 * 177.88932 * 22 21 20 25 25 F 1.39898 * 109.47319 * 305.85907 * 24 22 21 26 26 F 1.39894 * 109.47266 * 65.86490 * 24 22 21 27 27 F 1.39906 * 109.47108 * 185.86107 * 24 22 21 28 28 C 1.47426 * 108.70190 * 358.94239 * 13 12 11 29 29 H 0.97000 * 120.00259 * 0.02562 * 1 2 3 30 30 H 0.96709 * 113.99845 * 59.29997 * 10 9 7 31 31 H 1.08994 * 110.72118 * 271.94140 * 11 9 7 32 32 H 1.09005 * 110.71966 * 35.20777 * 11 9 7 33 33 H 1.09001 * 109.88279 * 97.22193 * 12 11 9 34 34 H 1.09001 * 109.88414 * 218.23410 * 12 11 9 35 35 H 1.08998 * 109.52514 * 182.14719 * 19 18 16 36 36 H 1.08999 * 109.57812 * 61.98428 * 19 18 16 37 37 H 1.08998 * 109.52641 * 295.41119 * 20 19 18 38 38 H 1.09007 * 109.57306 * 175.24417 * 20 19 18 39 39 H 1.09000 * 110.36327 * 265.28857 * 28 13 12 40 40 H 1.08994 * 110.36677 * 142.96943 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4404 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 -0.0052 10 8 0.4611 -2.6366 1.1776 11 6 0.3736 -2.6291 -1.2783 12 6 0.2585 -4.1567 -1.4642 13 7 1.3944 -4.7691 -0.7597 14 6 1.6420 -6.0907 -0.6684 15 8 2.6573 -6.4819 -0.1326 16 6 0.6573 -7.0826 -1.2322 17 1 -0.2484 -6.5610 -1.5414 18 8 0.3335 -8.0550 -0.2340 19 6 1.4578 -8.8260 0.2003 20 6 2.0787 -9.5335 -1.0076 21 8 2.4025 -8.5609 -2.0058 22 6 1.2783 -7.7900 -2.4402 23 1 0.5391 -8.4487 -2.8961 24 6 1.7354 -6.7485 -3.4635 25 9 2.7756 -5.9866 -2.9206 26 9 2.1855 -7.3961 -4.6189 27 9 0.6629 -5.9102 -3.7866 28 6 2.2183 -3.6979 -0.1704 29 1 -0.4850 0.8400 -0.0004 30 1 -0.1932 -1.9347 1.2973 31 1 -0.6086 -2.1852 -1.1166 32 1 0.8680 -2.1724 -2.1357 33 1 -0.6786 -4.5127 -1.0362 34 1 0.2996 -4.4052 -2.5247 35 1 1.1311 -9.5681 0.9288 36 1 2.1973 -8.1682 0.6570 37 1 1.3665 -10.2508 -1.4154 38 1 2.9850 -10.0548 -0.6994 39 1 3.0362 -3.4357 -0.8415 40 1 2.6069 -4.0082 0.7995 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869076063.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:51 Heat of formation + Delta-G solvation = -321.042342 kcal Electronic energy + Delta-G solvation = -32975.142998 eV Core-core repulsion = 27954.329186 eV Total energy + Delta-G solvation = -5020.813812 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -51.34828 -48.87307 -48.79018 -42.13154 -40.34673 -38.71459 -37.36059 -36.15842 -34.21952 -33.83293 -31.51335 -30.21081 -29.77810 -28.18418 -26.66718 -24.63999 -24.32936 -23.07533 -21.58070 -20.50836 -19.90891 -19.75830 -19.27481 -19.13918 -18.61544 -17.93319 -17.45147 -17.15725 -16.92438 -16.65768 -16.43676 -16.09947 -15.73789 -15.61034 -15.44710 -15.29957 -15.24967 -14.92684 -14.90342 -14.81181 -14.60828 -14.28118 -13.91306 -13.71417 -13.51466 -13.31179 -13.23909 -13.05900 -12.97479 -12.65506 -12.55606 -12.36799 -12.26720 -11.87500 -11.84117 -11.27913 -11.00593 -10.66342 -10.23040 -10.09880 -9.61167 -8.24537 -6.39627 1.17482 1.26919 1.41815 1.45103 1.53659 1.76283 2.11375 2.32112 2.39737 2.61201 2.69094 2.99624 3.13234 3.20185 3.30866 3.72718 3.79940 3.82776 3.85327 3.97178 4.19577 4.27969 4.30784 4.35385 4.55471 4.63237 4.67877 4.82648 4.89348 5.13475 5.20428 5.43825 5.52330 5.55468 5.59159 5.76229 6.06103 6.48145 6.63946 6.94711 7.30575 7.39096 8.81203 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.019520 B = 0.003985 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1434.093342 B = 7023.931688 C = 7600.541944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.040 3.960 3 Si 0.958 3.042 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.278 1.278 7 C -0.564 4.564 8 H 0.052 0.948 9 C 0.236 3.764 10 O -0.592 6.592 11 C -0.123 4.123 12 C 0.088 3.912 13 N -0.600 5.600 14 C 0.493 3.507 15 O -0.555 6.555 16 C 0.050 3.950 17 H 0.157 0.843 18 O -0.346 6.346 19 C -0.011 4.011 20 C 0.035 3.965 21 O -0.371 6.371 22 C 0.032 3.968 23 H 0.165 0.835 24 C 0.458 3.542 25 F -0.182 7.182 26 F -0.170 7.170 27 F -0.163 7.163 28 C 0.130 3.870 29 H 0.272 0.728 30 H 0.379 0.621 31 H 0.079 0.921 32 H 0.060 0.940 33 H 0.079 0.921 34 H 0.089 0.911 35 H 0.142 0.858 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.132 0.868 39 H 0.068 0.932 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.074 -17.553 -7.173 19.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.162 4.162 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.203 1.203 7 C -0.602 4.602 8 H 0.071 0.929 9 C 0.196 3.804 10 O -0.400 6.400 11 C -0.162 4.162 12 C -0.033 4.033 13 N -0.333 5.333 14 C 0.281 3.719 15 O -0.435 6.435 16 C -0.012 4.012 17 H 0.175 0.825 18 O -0.263 6.263 19 C -0.086 4.086 20 C -0.040 4.040 21 O -0.290 6.290 22 C -0.029 4.029 23 H 0.182 0.818 24 C 0.404 3.596 25 F -0.163 7.163 26 F -0.151 7.151 27 F -0.144 7.144 28 C 0.008 3.992 29 H 0.081 0.919 30 H 0.228 0.772 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.097 0.903 34 H 0.107 0.893 35 H 0.160 0.840 36 H 0.087 0.913 37 H 0.116 0.884 38 H 0.150 0.850 39 H 0.086 0.914 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.309 -18.263 -6.831 19.634 hybrid contribution 0.395 1.991 0.024 2.030 sum -1.914 -16.271 -6.807 17.741 Atomic orbital electron populations 1.69765 1.06523 1.28419 1.49559 1.25559 0.95835 1.01830 0.92931 0.85560 0.78552 0.79176 0.78333 1.19840 1.20395 1.20273 1.21644 0.93516 0.91660 1.53425 0.92930 1.19737 0.87517 0.90520 0.82594 1.86121 1.54224 1.53700 1.45973 1.22923 1.01926 0.91987 0.99342 1.22517 0.88646 0.94970 0.97183 1.48665 1.27460 1.04797 1.52387 1.21183 0.87440 0.82383 0.80858 1.90582 1.28469 1.78183 1.46258 1.22814 0.99769 0.89253 0.89317 0.82543 1.88253 1.33073 1.48618 1.56379 1.23959 0.89951 0.96284 0.98420 1.23575 1.04027 0.89497 0.86934 1.88151 1.30272 1.51690 1.58866 1.23777 0.92513 0.93840 0.92750 0.81797 1.20238 0.75572 0.81966 0.81846 1.93264 1.59959 1.77748 1.85355 1.93211 1.89507 1.80911 1.51459 1.93165 1.55372 1.72719 1.93162 1.22092 0.93876 0.86618 0.96642 0.91870 0.77179 0.90218 0.92146 0.90261 0.89348 0.84046 0.91305 0.88428 0.85038 0.91433 0.93452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -45.63 10.73 21.45 0.23 -45.40 16 2 C 0.04 2.05 5.27 84.66 0.45 2.49 16 3 Si 0.96 41.11 29.54 68.60 2.03 43.13 16 4 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 5 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 6 H -0.28 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.56 -29.77 8.27 25.60 0.21 -29.56 16 8 H 0.05 2.82 7.79 -2.91 -0.02 2.80 16 9 C 0.24 11.51 0.88 -10.15 -0.01 11.50 16 10 O -0.59 -30.21 13.18 -148.98 -1.96 -32.17 16 11 C -0.12 -5.24 5.38 31.78 0.17 -5.06 16 12 C 0.09 3.08 5.97 86.73 0.52 3.60 16 13 N -0.60 -23.61 3.13 -811.81 -2.54 -26.15 16 14 C 0.49 18.15 4.36 87.66 0.38 18.53 16 15 O -0.56 -23.49 13.52 17.85 0.24 -23.25 16 16 C 0.05 1.34 2.95 29.90 0.09 1.43 16 17 H 0.16 3.51 6.26 -2.39 -0.01 3.49 16 18 O -0.35 -8.85 10.65 -126.79 -1.35 -10.20 16 19 C -0.01 -0.23 6.56 72.03 0.47 0.24 16 20 C 0.03 0.61 7.05 72.03 0.51 1.12 16 21 O -0.37 -9.30 9.58 -126.85 -1.22 -10.51 16 22 C 0.03 0.71 2.63 30.64 0.08 0.79 16 23 H 0.16 2.22 8.14 -2.39 -0.02 2.20 16 24 C 0.46 11.93 2.76 71.98 0.20 12.13 16 25 F -0.18 -6.25 14.63 44.97 0.66 -5.59 16 26 F -0.17 -4.18 17.31 44.97 0.78 -3.40 16 27 F -0.16 -3.87 14.00 44.97 0.63 -3.24 16 28 C 0.13 6.02 6.07 86.85 0.53 6.55 16 29 H 0.27 13.05 8.31 -92.71 -0.77 12.28 16 30 H 0.38 19.25 7.51 -74.05 -0.56 18.70 16 31 H 0.08 3.51 7.54 -2.39 -0.02 3.49 16 32 H 0.06 2.63 8.03 -2.38 -0.02 2.61 16 33 H 0.08 2.48 7.75 -2.39 -0.02 2.46 16 34 H 0.09 2.66 5.26 -2.39 -0.01 2.64 16 35 H 0.14 2.11 8.14 -2.39 -0.02 2.09 16 36 H 0.07 2.09 5.41 -2.39 -0.01 2.08 16 37 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.13 1.83 8.14 -2.38 -0.02 1.81 16 39 H 0.07 3.14 8.03 -2.39 -0.02 3.12 16 40 H 0.05 2.35 8.08 -2.39 -0.02 2.33 16 Total: -1.00 -64.54 328.26 1.65 -62.89 By element: Atomic # 1 Polarization: 29.58 SS G_CDS: 0.56 Total: 30.14 kcal Atomic # 6 Polarization: 20.16 SS G_CDS: 3.59 Total: 23.76 kcal Atomic # 7 Polarization: -69.25 SS G_CDS: -2.31 Total: -71.55 kcal Atomic # 8 Polarization: -71.85 SS G_CDS: -4.29 Total: -76.13 kcal Atomic # 9 Polarization: -14.30 SS G_CDS: 2.07 Total: -12.23 kcal Atomic # 14 Polarization: 41.11 SS G_CDS: 2.03 Total: 43.13 kcal Total: -64.54 1.65 -62.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869076063.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -258.152 kcal (2) G-P(sol) polarization free energy of solvation -64.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -322.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -321.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds