Wall clock time and date at job start Tue Mar 31 2020 22:37:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86802 * 120.00315 * 2 1 4 4 H 1.48498 * 109.47410 * 266.53640 * 3 2 1 5 5 H 1.48501 * 109.46825 * 26.53506 * 3 2 1 6 6 H 1.48508 * 109.47215 * 146.53263 * 3 2 1 7 7 C 1.37879 * 120.00073 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99992 * 350.79454 * 7 2 1 9 9 C 1.50698 * 120.00353 * 170.79636 * 7 2 1 10 10 O 1.42901 * 110.64282 * 325.39074 * 9 7 2 11 11 C 1.55156 * 110.87247 * 202.13705 * 9 7 2 12 12 C 1.55134 * 101.48605 * 205.89886 * 11 9 7 13 13 N 1.47428 * 104.72213 * 37.29734 * 12 11 9 14 14 C 1.34767 * 125.64627 * 155.81699 * 13 12 11 15 15 O 1.21284 * 119.99911 * 184.70743 * 14 13 12 16 16 C 1.50704 * 120.00261 * 4.70896 * 14 13 12 17 17 H 1.08998 * 109.51971 * 344.05281 * 16 14 13 18 18 O 1.43079 * 109.52149 * 223.85964 * 16 14 13 19 19 C 1.43071 * 113.59242 * 298.04465 * 18 16 14 20 20 C 1.53147 * 109.15633 * 302.05313 * 19 18 16 21 21 O 1.43074 * 109.14973 * 55.31046 * 20 19 18 22 22 C 1.43074 * 113.59364 * 302.04923 * 21 20 19 23 23 H 1.09005 * 109.52760 * 298.05446 * 22 21 20 24 24 C 1.53001 * 109.52788 * 177.91849 * 22 21 20 25 25 F 1.39897 * 109.46718 * 64.51390 * 24 22 21 26 26 F 1.39901 * 109.47391 * 184.51665 * 24 22 21 27 27 F 1.39898 * 109.47190 * 304.51685 * 24 22 21 28 28 C 1.47018 * 108.70040 * 335.55274 * 13 12 11 29 29 H 0.97002 * 120.00357 * 0.02562 * 1 2 3 30 30 H 0.96701 * 113.99472 * 297.95131 * 10 9 7 31 31 H 1.08993 * 111.00883 * 324.13672 * 11 9 7 32 32 H 1.09000 * 111.00258 * 87.95916 * 11 9 7 33 33 H 1.09002 * 110.49469 * 278.45905 * 12 11 9 34 34 H 1.09002 * 110.34349 * 156.06210 * 12 11 9 35 35 H 1.09005 * 109.52531 * 61.95193 * 19 18 16 36 36 H 1.09003 * 109.52409 * 182.08290 * 19 18 16 37 37 H 1.08996 * 109.51986 * 295.41048 * 20 19 18 38 38 H 1.09000 * 109.52389 * 175.21309 * 20 19 18 39 39 H 1.09002 * 109.88069 * 120.70581 * 28 13 12 40 40 H 1.09006 * 109.88573 * 241.86608 * 28 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.5700 2.0041 -1.3975 5 1 1.4119 2.6727 0.6255 6 1 3.5082 1.4624 0.7721 7 6 2.0045 -1.1941 -0.0005 8 1 1.4749 -2.1235 0.1487 9 6 3.4969 -1.2024 -0.2093 10 8 3.8845 -0.1685 -1.1164 11 6 3.9761 -2.5876 -0.7183 12 6 5.4466 -2.6065 -0.2242 13 7 5.4084 -1.9414 1.0910 14 6 6.3023 -2.1142 2.0846 15 8 6.1259 -1.5794 3.1588 16 6 7.5212 -2.9718 1.8611 17 1 7.3775 -3.5839 0.9707 18 8 7.7253 -3.8179 2.9967 19 6 7.9714 -3.0994 4.2092 20 6 9.1999 -2.2043 4.0224 21 8 8.9957 -1.3582 2.8868 22 6 8.7496 -2.0767 1.6742 23 1 9.6161 -2.6928 1.4335 24 6 8.4941 -1.0866 0.5360 25 9 9.6509 -0.3352 0.3033 26 9 8.1526 -1.7887 -0.6249 27 9 7.4453 -0.2308 0.8890 28 6 4.2373 -1.0538 1.1366 29 1 -0.4851 0.8400 -0.0004 30 1 3.5088 -0.2616 -2.0025 31 1 3.3977 -3.3922 -0.2645 32 1 3.9300 -2.6414 -1.8060 33 1 6.0870 -2.0528 -0.9108 34 1 5.7982 -3.6329 -0.1203 35 1 7.1050 -2.4833 4.4499 36 1 8.1534 -3.8048 5.0201 37 1 10.0814 -2.8246 3.8607 38 1 9.3427 -1.5914 4.9123 39 1 3.5808 -1.3482 1.9554 40 1 4.5598 -0.0211 1.2703 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869076064.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:53 Heat of formation + Delta-G solvation = -315.915397 kcal Electronic energy + Delta-G solvation = -33368.263752 eV Core-core repulsion = 28347.672261 eV Total energy + Delta-G solvation = -5020.591491 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -51.32578 -48.83687 -48.78996 -42.16455 -40.49424 -38.91375 -37.36896 -36.43971 -34.49456 -33.88660 -31.75717 -30.30650 -29.79587 -28.29046 -26.61169 -24.66739 -24.45715 -23.21446 -21.54100 -20.58457 -19.90034 -19.75295 -19.46983 -19.22243 -18.67278 -17.94080 -17.54031 -17.14791 -17.12005 -16.82596 -16.55320 -16.20341 -15.72429 -15.60478 -15.48725 -15.39238 -15.22167 -14.91199 -14.89392 -14.84373 -14.75498 -14.38197 -14.29191 -13.83527 -13.67848 -13.58350 -13.40002 -13.09915 -13.00941 -12.64348 -12.50529 -12.32002 -12.12134 -12.07172 -11.87843 -11.30182 -11.00764 -10.71215 -10.41853 -10.09188 -9.66996 -8.40705 -6.51617 1.16539 1.26138 1.40809 1.45040 1.63503 1.74346 2.10366 2.33015 2.36506 2.60486 2.69056 2.92360 3.12884 3.17134 3.30902 3.47778 3.73009 3.77170 3.80740 3.84362 4.18353 4.19827 4.26035 4.34118 4.47232 4.58106 4.67133 4.83060 4.90335 4.91636 5.11183 5.23658 5.31330 5.49641 5.54536 5.58101 6.03604 6.44414 6.56474 6.93516 7.00867 7.28067 8.72200 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.017408 B = 0.004725 C = 0.004431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1608.046592 B = 5925.041004 C = 6318.266009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.036 3.964 3 Si 0.985 3.015 4 H -0.269 1.269 5 H -0.332 1.332 6 H -0.278 1.278 7 C -0.546 4.546 8 H 0.052 0.948 9 C 0.216 3.784 10 O -0.567 6.567 11 C -0.136 4.136 12 C 0.088 3.912 13 N -0.605 5.605 14 C 0.492 3.508 15 O -0.561 6.561 16 C 0.052 3.948 17 H 0.169 0.831 18 O -0.344 6.344 19 C -0.014 4.014 20 C 0.033 3.967 21 O -0.377 6.377 22 C 0.030 3.970 23 H 0.167 0.833 24 C 0.457 3.543 25 F -0.173 7.173 26 F -0.160 7.160 27 F -0.185 7.185 28 C 0.125 3.875 29 H 0.268 0.732 30 H 0.388 0.612 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.087 0.913 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.141 0.859 37 H 0.098 0.902 38 H 0.128 0.872 39 H 0.053 0.947 40 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.207 -9.482 0.679 25.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.165 4.165 3 Si 0.819 3.181 4 H -0.195 1.195 5 H -0.264 1.264 6 H -0.204 1.204 7 C -0.584 4.584 8 H 0.070 0.930 9 C 0.176 3.824 10 O -0.377 6.377 11 C -0.174 4.174 12 C -0.033 4.033 13 N -0.339 5.339 14 C 0.280 3.720 15 O -0.441 6.441 16 C -0.009 4.009 17 H 0.186 0.814 18 O -0.261 6.261 19 C -0.090 4.090 20 C -0.042 4.042 21 O -0.296 6.296 22 C -0.030 4.030 23 H 0.184 0.816 24 C 0.402 3.598 25 F -0.154 7.154 26 F -0.141 7.141 27 F -0.166 7.166 28 C 0.002 3.998 29 H 0.077 0.923 30 H 0.238 0.762 31 H 0.093 0.907 32 H 0.125 0.875 33 H 0.105 0.895 34 H 0.127 0.873 35 H 0.093 0.907 36 H 0.159 0.841 37 H 0.116 0.884 38 H 0.146 0.854 39 H 0.071 0.929 40 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 23.339 -8.924 1.801 25.052 hybrid contribution -0.962 1.222 -0.270 1.578 sum 22.377 -7.702 1.531 23.715 Atomic orbital electron populations 1.70054 1.08140 1.28431 1.49929 1.25694 0.95148 1.02891 0.92767 0.85152 0.76534 0.77670 0.78774 1.19470 1.26367 1.20396 1.21457 0.91412 0.93983 1.51563 0.92950 1.19900 0.90951 0.85851 0.85738 1.86104 1.74771 1.51012 1.25779 1.23307 0.93950 0.97395 1.02724 1.22908 0.98806 0.98638 0.82985 1.48777 1.25581 1.43666 1.15828 1.21369 0.84858 0.82258 0.83470 1.90561 1.77340 1.50594 1.25562 1.22851 0.89782 0.93720 0.94589 0.81369 1.88233 1.91331 1.30160 1.16370 1.24020 0.99690 0.98155 0.87101 1.23586 0.97750 0.94476 0.88357 1.88157 1.92188 1.33191 1.16065 1.23830 1.01234 0.91824 0.86113 0.81565 1.20272 0.74403 0.81395 0.83684 1.93206 1.49035 1.78081 1.95094 1.93190 1.91954 1.78200 1.50738 1.93285 1.58761 1.72811 1.91748 1.22234 0.85894 0.92705 0.99012 0.92328 0.76209 0.90655 0.87509 0.89469 0.87268 0.90706 0.84135 0.88352 0.85376 0.92888 0.94233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.14 13.96 21.45 0.30 -55.84 16 2 C 0.04 2.04 5.45 84.66 0.46 2.50 16 3 Si 0.99 49.40 24.91 68.60 1.71 51.11 16 4 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 5 H -0.33 -17.14 7.11 99.48 0.71 -16.43 16 6 H -0.28 -14.34 5.25 99.48 0.52 -13.82 16 7 C -0.55 -29.10 8.70 25.60 0.22 -28.88 16 8 H 0.05 3.05 7.99 -2.91 -0.02 3.03 16 9 C 0.22 9.30 0.68 -10.35 -0.01 9.29 16 10 O -0.57 -23.34 8.96 -148.98 -1.33 -24.67 16 11 C -0.14 -4.37 6.26 32.06 0.20 -4.17 16 12 C 0.09 2.40 5.89 86.93 0.51 2.91 16 13 N -0.60 -21.75 2.58 -811.33 -2.09 -23.85 16 14 C 0.49 17.01 4.54 87.66 0.40 17.41 16 15 O -0.56 -23.47 13.64 16.10 0.22 -23.25 16 16 C 0.05 1.23 2.93 29.90 0.09 1.32 16 17 H 0.17 2.85 5.90 -2.39 -0.01 2.83 16 18 O -0.34 -7.80 10.65 -125.32 -1.33 -9.14 16 19 C -0.01 -0.29 6.57 72.03 0.47 0.18 16 20 C 0.03 0.56 7.05 72.03 0.51 1.07 16 21 O -0.38 -9.28 9.80 -130.40 -1.28 -10.56 16 22 C 0.03 0.63 2.63 30.64 0.08 0.71 16 23 H 0.17 1.94 8.14 -2.38 -0.02 1.92 16 24 C 0.46 11.51 2.76 71.98 0.20 11.70 16 25 F -0.17 -4.27 17.31 44.97 0.78 -3.49 16 26 F -0.16 -3.39 14.07 44.97 0.63 -2.75 16 27 F -0.18 -6.50 14.22 44.97 0.64 -5.86 16 28 C 0.12 5.64 5.64 86.73 0.49 6.13 16 29 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 30 H 0.39 13.32 9.07 -74.06 -0.67 12.65 16 31 H 0.07 2.52 7.99 -2.39 -0.02 2.50 16 32 H 0.11 2.85 8.14 -2.39 -0.02 2.83 16 33 H 0.09 2.23 6.04 -2.39 -0.01 2.22 16 34 H 0.11 2.10 6.91 -2.39 -0.02 2.08 16 35 H 0.07 2.21 5.18 -2.38 -0.01 2.19 16 36 H 0.14 1.92 8.14 -2.39 -0.02 1.91 16 37 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.13 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.05 2.65 7.82 -2.39 -0.02 2.63 16 40 H 0.04 2.01 6.31 -2.38 -0.02 1.99 16 Total: -1.00 -76.21 320.89 2.13 -74.08 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: 0.26 Total: 14.05 kcal Atomic # 6 Polarization: 16.56 SS G_CDS: 3.63 Total: 20.18 kcal Atomic # 7 Polarization: -77.89 SS G_CDS: -1.79 Total: -79.68 kcal Atomic # 8 Polarization: -63.90 SS G_CDS: -3.73 Total: -67.62 kcal Atomic # 9 Polarization: -14.16 SS G_CDS: 2.05 Total: -12.11 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 1.71 Total: 51.11 kcal Total: -76.21 2.13 -74.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869076064.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -241.832 kcal (2) G-P(sol) polarization free energy of solvation -76.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -318.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -315.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds