Wall clock time and date at job start Tue Mar 31 2020 22:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00005 * 2 1 4 4 H 1.48501 * 109.47236 * 270.00088 * 3 2 1 5 5 H 1.48500 * 109.47336 * 30.00083 * 3 2 1 6 6 H 1.48502 * 109.46825 * 150.00230 * 3 2 1 7 7 C 1.37879 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00068 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99940 * 0.02562 * 7 2 1 10 10 O 1.42895 * 109.46893 * 179.97438 * 9 7 2 11 11 C 1.42906 * 114.00021 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47292 * 179.97438 * 11 10 9 13 13 O 1.45198 * 109.46750 * 65.00475 * 12 11 10 14 14 C 1.34234 * 116.99763 * 180.02562 * 13 12 11 15 15 O 1.20832 * 119.99884 * 359.71919 * 14 13 12 16 16 C 1.50700 * 120.00093 * 179.97438 * 14 13 12 17 17 H 1.08997 * 109.60133 * 336.63636 * 16 14 13 18 18 C 1.52911 * 109.60348 * 216.31124 * 16 14 13 19 19 N 1.45753 * 110.48885 * 290.99608 * 18 16 14 20 20 C 1.33353 * 124.10727 * 340.95048 * 19 18 16 21 21 O 1.21280 * 118.24705 * 182.18091 * 20 19 18 22 22 C 1.50175 * 123.50571 * 2.19643 * 20 19 18 23 23 C 1.53076 * 109.89284 * 342.42349 * 22 20 19 24 24 H 1.09004 * 109.68880 * 289.17691 * 23 22 20 25 25 C 1.53001 * 109.67166 * 168.63851 * 23 22 20 26 26 F 1.39908 * 109.46736 * 301.04931 * 25 23 22 27 27 F 1.39895 * 109.47093 * 61.04760 * 25 23 22 28 28 F 1.39898 * 109.47061 * 181.05070 * 25 23 22 29 29 H 0.97004 * 119.99994 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47013 * 59.99622 * 9 7 2 31 31 H 1.09007 * 109.46858 * 299.99755 * 9 7 2 32 32 H 1.09007 * 109.46691 * 59.99902 * 11 10 9 33 33 H 1.08998 * 109.46857 * 300.00220 * 11 10 9 34 34 H 1.08999 * 109.47081 * 305.00314 * 12 11 10 35 35 H 1.09000 * 109.47028 * 185.00012 * 12 11 10 36 36 H 1.08996 * 109.30296 * 51.30923 * 18 16 14 37 37 H 1.08999 * 109.30469 * 170.89340 * 18 16 14 38 38 H 0.97001 * 117.95014 * 160.92512 * 19 18 16 39 39 H 1.09005 * 109.40121 * 102.55064 * 22 20 19 40 40 H 1.09000 * 109.40456 * 222.37519 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5650 -4.8754 0.0011 12 6 2.6480 -5.9562 0.0004 13 8 3.4001 -5.8885 1.2406 14 6 4.3950 -6.7756 1.3992 15 8 4.6263 -7.5852 0.5326 16 6 5.2197 -6.7654 2.6605 17 1 5.1713 -5.7787 3.1210 18 6 6.6726 -7.1049 2.3261 19 7 6.7894 -8.4983 1.9149 20 6 5.8781 -9.4351 2.1801 21 8 6.1023 -10.5718 1.8215 22 6 4.5890 -9.1577 2.8988 23 6 4.6811 -7.8191 3.6357 24 1 5.3580 -7.9132 4.4849 25 6 3.2924 -7.4048 4.1265 26 9 2.4247 -7.2971 3.0343 27 9 2.8053 -8.3688 5.0157 28 9 3.3774 -6.1698 4.7782 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8904 32 1 0.9446 -4.9827 -0.8887 33 1 0.9452 -4.9822 0.8913 34 1 3.3210 -5.7957 -0.8419 35 1 2.1819 -6.9375 -0.0887 36 1 7.0162 -6.4605 1.5170 37 1 7.2932 -6.9392 3.2068 38 1 7.5792 -8.7607 1.4167 39 1 3.7732 -9.1183 2.1769 40 1 4.3972 -9.9534 3.6187 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873452527.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:18 Heat of formation + Delta-G solvation = -321.208065 kcal Electronic energy + Delta-G solvation = -31229.470684 eV Core-core repulsion = 26208.649686 eV Total energy + Delta-G solvation = -5020.820999 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.42287 -47.91045 -47.84735 -41.55460 -39.82734 -37.53837 -36.69268 -35.98826 -34.22732 -32.80814 -30.98150 -29.96017 -27.43686 -27.00471 -25.27441 -23.25815 -22.49683 -22.22628 -21.51487 -19.67819 -18.81177 -18.57172 -18.41051 -17.97454 -17.20798 -16.79203 -16.52784 -16.40944 -15.95592 -15.78314 -15.39846 -14.88152 -14.69380 -14.67399 -14.36214 -14.29652 -14.20516 -14.05529 -13.94742 -13.92016 -13.83252 -13.36476 -13.20099 -12.87000 -12.57706 -12.26234 -12.00115 -11.98823 -11.90393 -11.48430 -10.98657 -10.89071 -10.81582 -10.56555 -10.44748 -10.23823 -10.08989 -9.45839 -9.16831 -8.91626 -8.25183 -6.15062 -4.17055 1.86931 2.20932 2.32792 2.41672 2.84567 3.27440 3.28550 3.32596 3.35115 3.37438 3.44670 3.85742 4.04024 4.18664 4.28260 4.29619 4.40753 4.52687 4.68323 4.76803 4.92831 4.98083 5.02785 5.13820 5.18615 5.21584 5.38044 5.81195 5.86946 6.02211 6.37365 6.41529 6.91146 7.02017 7.36382 7.57794 7.74251 7.85051 8.08841 8.47951 8.95045 9.47770 10.96475 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016286 B = 0.002937 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.822575 B = 9530.003281 C = 9953.716952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.909 3.091 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.516 4.516 8 H 0.067 0.933 9 C 0.195 3.805 10 O -0.391 6.391 11 C 0.062 3.938 12 C 0.077 3.923 13 O -0.327 6.327 14 C 0.459 3.541 15 O -0.498 6.498 16 C -0.104 4.104 17 H 0.142 0.858 18 C 0.131 3.869 19 N -0.711 5.711 20 C 0.544 3.456 21 O -0.550 6.550 22 C -0.141 4.141 23 C -0.129 4.129 24 H 0.143 0.857 25 C 0.455 3.545 26 F -0.169 7.169 27 F -0.178 7.178 28 F -0.171 7.171 29 H 0.264 0.736 30 H 0.006 0.994 31 H 0.008 0.992 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.406 0.594 39 H 0.115 0.885 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.340 -17.137 9.660 22.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.736 3.264 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.121 3.879 10 O -0.311 6.311 11 C -0.016 4.016 12 C 0.003 3.997 13 O -0.242 6.242 14 C 0.300 3.700 15 O -0.386 6.386 16 C -0.124 4.124 17 H 0.160 0.840 18 C 0.006 3.994 19 N -0.364 5.364 20 C 0.331 3.669 21 O -0.428 6.428 22 C -0.180 4.180 23 C -0.149 4.149 24 H 0.161 0.839 25 C 0.401 3.599 26 F -0.150 7.150 27 F -0.160 7.160 28 F -0.152 7.152 29 H 0.074 0.926 30 H 0.024 0.976 31 H 0.025 0.975 32 H 0.081 0.919 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.243 0.757 39 H 0.133 0.867 40 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 11.279 -17.712 9.327 22.976 hybrid contribution -0.112 1.045 -0.256 1.081 sum 11.167 -16.667 9.071 22.017 Atomic orbital electron populations 1.69958 1.06119 1.27239 1.50398 1.24952 0.94986 0.99463 0.95089 0.86325 0.79661 0.82200 0.78236 1.20466 1.21047 1.19595 1.21033 0.94057 0.89273 1.51012 0.91525 1.20239 0.88737 0.83444 0.95527 1.87900 1.35363 1.12599 1.95246 1.22317 0.93209 0.85401 1.00687 1.23257 0.93624 0.99001 0.83772 1.86621 1.42561 1.53262 1.41782 1.23045 0.79784 0.78962 0.88187 1.90713 1.67608 1.37308 1.42945 1.21446 0.95214 1.02891 0.92812 0.83989 1.21239 0.92522 0.83214 1.02436 1.45229 1.24165 1.08748 1.58222 1.19349 0.84274 0.84564 0.78747 1.90781 1.77443 1.21016 1.53537 1.21855 0.98594 0.96178 1.01412 1.22624 0.94015 0.96889 1.01328 0.83907 1.20222 0.88305 0.75404 0.75964 1.93262 1.72320 1.95789 1.53668 1.93206 1.89688 1.63549 1.69538 1.93245 1.96406 1.43728 1.81800 0.92594 0.97640 0.97456 0.91885 0.93065 0.90379 0.90351 0.88618 0.88960 0.75716 0.86692 0.86172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.52 13.29 55.43 0.74 -25.78 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 21.45 29.54 -169.99 -5.02 16.43 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.52 -14.94 9.43 -34.44 -0.32 -15.27 16 8 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 9 C 0.19 5.24 5.69 36.01 0.20 5.44 16 10 O -0.39 -9.21 10.30 -38.79 -0.40 -9.61 16 11 C 0.06 1.10 6.33 37.16 0.24 1.33 16 12 C 0.08 1.16 5.84 37.16 0.22 1.37 16 13 O -0.33 -4.90 8.62 -42.03 -0.36 -5.26 16 14 C 0.46 5.62 4.73 36.01 0.17 5.79 16 15 O -0.50 -6.96 13.43 -18.75 -0.25 -7.21 16 16 C -0.10 -0.81 2.57 -91.64 -0.24 -1.05 16 17 H 0.14 0.93 7.65 -51.93 -0.40 0.54 16 18 C 0.13 0.72 6.36 -4.49 -0.03 0.69 16 19 N -0.71 -5.62 4.86 -61.40 -0.30 -5.92 16 20 C 0.54 5.82 6.50 -11.87 -0.08 5.75 16 21 O -0.55 -8.12 17.78 5.56 0.10 -8.02 16 22 C -0.14 -1.22 4.47 -28.10 -0.13 -1.35 16 23 C -0.13 -0.90 2.14 -90.40 -0.19 -1.09 16 24 H 0.14 0.51 8.13 -51.93 -0.42 0.08 16 25 C 0.46 4.28 2.70 37.16 0.10 4.38 16 26 F -0.17 -2.02 13.35 2.25 0.03 -1.99 16 27 F -0.18 -1.65 17.05 2.25 0.04 -1.61 16 28 F -0.17 -1.77 16.71 2.25 0.04 -1.73 16 29 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 30 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 31 H 0.01 0.21 8.14 -51.92 -0.42 -0.21 16 32 H 0.06 1.02 8.14 -51.92 -0.42 0.60 16 33 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 35 H 0.08 1.01 8.13 -51.93 -0.42 0.59 16 36 H 0.10 0.50 8.12 -51.93 -0.42 0.08 16 37 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 38 H 0.41 2.86 8.80 -40.82 -0.36 2.50 16 39 H 0.12 1.19 6.34 -51.93 -0.33 0.86 16 40 H 0.12 0.86 8.12 -51.93 -0.42 0.43 16 LS Contribution 348.73 15.07 5.26 5.26 Total: -1.00 -36.21 348.73 -5.15 -41.35 By element: Atomic # 1 Polarization: 1.45 SS G_CDS: -4.85 Total: -3.41 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -0.15 Total: 7.51 kcal Atomic # 7 Polarization: -32.14 SS G_CDS: 0.44 Total: -31.70 kcal Atomic # 8 Polarization: -29.19 SS G_CDS: -0.91 Total: -30.10 kcal Atomic # 9 Polarization: -5.44 SS G_CDS: 0.11 Total: -5.34 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -36.21 -5.15 -41.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873452527.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -279.855 kcal (2) G-P(sol) polarization free energy of solvation -36.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -316.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -321.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds