Wall clock time and date at job start Tue Mar 31 2020 22:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86801 * 120.00005 * 2 1 4 4 H 1.48501 * 109.47236 * 270.00088 * 3 2 1 5 5 H 1.48500 * 109.47336 * 30.00083 * 3 2 1 6 6 H 1.48502 * 109.46825 * 150.00230 * 3 2 1 7 7 C 1.37879 * 119.99980 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00068 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99940 * 0.02562 * 7 2 1 10 10 O 1.42895 * 109.46893 * 179.97438 * 9 7 2 11 11 C 1.42906 * 114.00021 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47292 * 179.97438 * 11 10 9 13 13 O 1.45198 * 109.46750 * 65.00475 * 12 11 10 14 14 C 1.34234 * 116.99763 * 180.02562 * 13 12 11 15 15 O 1.20832 * 119.99884 * 359.71919 * 14 13 12 16 16 C 1.50700 * 120.00093 * 179.97438 * 14 13 12 17 17 H 1.08997 * 109.60133 * 336.63636 * 16 14 13 18 18 C 1.52911 * 109.60348 * 216.31124 * 16 14 13 19 19 N 1.45753 * 110.48885 * 290.99608 * 18 16 14 20 20 C 1.33353 * 124.10727 * 340.95048 * 19 18 16 21 21 O 1.21280 * 118.24705 * 182.18091 * 20 19 18 22 22 C 1.50175 * 123.50571 * 2.19643 * 20 19 18 23 23 C 1.53076 * 109.89284 * 342.42349 * 22 20 19 24 24 H 1.09004 * 109.68880 * 289.17691 * 23 22 20 25 25 C 1.53001 * 109.67166 * 168.63851 * 23 22 20 26 26 F 1.39908 * 109.46736 * 301.04931 * 25 23 22 27 27 F 1.39895 * 109.47093 * 61.04760 * 25 23 22 28 28 F 1.39898 * 109.47061 * 181.05070 * 25 23 22 29 29 H 0.97004 * 119.99994 * 0.02562 * 1 2 3 30 30 H 1.09003 * 109.47013 * 59.99622 * 9 7 2 31 31 H 1.09007 * 109.46858 * 299.99755 * 9 7 2 32 32 H 1.09007 * 109.46691 * 59.99902 * 11 10 9 33 33 H 1.08998 * 109.46857 * 300.00220 * 11 10 9 34 34 H 1.08999 * 109.47081 * 305.00314 * 12 11 10 35 35 H 1.09000 * 109.47028 * 185.00012 * 12 11 10 36 36 H 1.08996 * 109.30296 * 51.30923 * 18 16 14 37 37 H 1.08999 * 109.30469 * 170.89340 * 18 16 14 38 38 H 0.97001 * 117.95014 * 160.92512 * 19 18 16 39 39 H 1.09005 * 109.40121 * 102.55064 * 22 20 19 40 40 H 1.09000 * 109.40456 * 222.37519 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 2.1796 -3.5853 0.0005 11 6 1.5650 -4.8754 0.0011 12 6 2.6480 -5.9562 0.0004 13 8 3.4001 -5.8885 1.2406 14 6 4.3950 -6.7756 1.3992 15 8 4.6263 -7.5852 0.5326 16 6 5.2197 -6.7654 2.6605 17 1 5.1713 -5.7787 3.1210 18 6 6.6726 -7.1049 2.3261 19 7 6.7894 -8.4983 1.9149 20 6 5.8781 -9.4351 2.1801 21 8 6.1023 -10.5718 1.8215 22 6 4.5890 -9.1577 2.8988 23 6 4.6811 -7.8191 3.6357 24 1 5.3580 -7.9132 4.4849 25 6 3.2924 -7.4048 4.1265 26 9 2.4247 -7.2971 3.0343 27 9 2.8053 -8.3688 5.0157 28 9 3.3774 -6.1698 4.7782 29 1 -0.4850 0.8401 -0.0004 30 1 0.6246 -2.5571 -0.8897 31 1 0.6240 -2.5567 0.8904 32 1 0.9446 -4.9827 -0.8887 33 1 0.9452 -4.9822 0.8913 34 1 3.3210 -5.7957 -0.8419 35 1 2.1819 -6.9375 -0.0887 36 1 7.0162 -6.4605 1.5170 37 1 7.2932 -6.9392 3.2068 38 1 7.5792 -8.7607 1.4167 39 1 3.7732 -9.1183 2.1769 40 1 4.3972 -9.9534 3.6187 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873452527.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:18 Heat of formation + Delta-G solvation = -347.229361 kcal Electronic energy + Delta-G solvation = -31230.599052 eV Core-core repulsion = 26208.649686 eV Total energy + Delta-G solvation = -5021.949367 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -51.19001 -48.67564 -48.64410 -42.38954 -40.76596 -38.86020 -37.98327 -37.08111 -34.95938 -34.85406 -32.01893 -31.13737 -29.03852 -28.13224 -26.04351 -24.58006 -24.07903 -23.36097 -22.49639 -20.49608 -19.58137 -19.33887 -19.15994 -18.80017 -18.66766 -18.14640 -17.84060 -17.29623 -17.15766 -16.82822 -16.61771 -16.23988 -16.16784 -15.61627 -15.49152 -15.24630 -15.06863 -15.01104 -14.80753 -14.74599 -14.60398 -14.47695 -14.08995 -13.99875 -13.78056 -13.57961 -13.19709 -12.99946 -12.89452 -12.70025 -12.64528 -12.59106 -12.43414 -12.00196 -11.72473 -11.53887 -11.28240 -11.09037 -10.89839 -10.28684 -10.11360 -8.31781 -6.44269 0.94810 1.41820 1.44447 1.45182 1.54363 1.56528 1.57974 2.20377 2.35036 2.60491 2.67890 2.77662 3.02485 3.03539 3.21931 3.36324 3.51404 3.56709 3.66860 3.88862 3.92863 4.06906 4.24619 4.38517 4.40239 4.46376 4.48885 4.54027 4.62764 4.67891 4.84826 5.16482 5.37532 5.54654 5.75298 5.94793 6.22315 6.48166 6.58291 6.78714 7.11505 7.27404 8.80504 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.016286 B = 0.002937 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1718.822575 B = 9530.003281 C = 9953.716952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.006 3.994 3 Si 0.984 3.016 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.262 1.262 7 C -0.548 4.548 8 H 0.063 0.937 9 C 0.208 3.792 10 O -0.405 6.405 11 C 0.055 3.945 12 C 0.083 3.917 13 O -0.346 6.346 14 C 0.454 3.546 15 O -0.519 6.519 16 C -0.103 4.103 17 H 0.161 0.839 18 C 0.129 3.871 19 N -0.703 5.703 20 C 0.540 3.460 21 O -0.601 6.601 22 C -0.139 4.139 23 C -0.115 4.115 24 H 0.189 0.811 25 C 0.450 3.550 26 F -0.189 7.189 27 F -0.178 7.178 28 F -0.176 7.176 29 H 0.271 0.729 30 H -0.010 1.010 31 H -0.012 1.012 32 H 0.078 0.922 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.142 0.858 38 H 0.411 0.589 39 H 0.094 0.906 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.303 -16.275 10.884 23.670 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.192 4.192 3 Si 0.806 3.194 4 H -0.194 1.194 5 H -0.200 1.200 6 H -0.186 1.186 7 C -0.586 4.586 8 H 0.082 0.918 9 C 0.133 3.867 10 O -0.325 6.325 11 C -0.022 4.022 12 C 0.009 3.991 13 O -0.262 6.262 14 C 0.297 3.703 15 O -0.408 6.408 16 C -0.122 4.122 17 H 0.178 0.822 18 C 0.006 3.994 19 N -0.354 5.354 20 C 0.328 3.672 21 O -0.483 6.483 22 C -0.178 4.178 23 C -0.134 4.134 24 H 0.207 0.793 25 C 0.396 3.604 26 F -0.170 7.170 27 F -0.160 7.160 28 F -0.157 7.157 29 H 0.080 0.920 30 H 0.007 0.993 31 H 0.006 0.994 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.093 0.907 35 H 0.118 0.882 36 H 0.120 0.880 37 H 0.160 0.840 38 H 0.248 0.752 39 H 0.112 0.888 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 13.257 -16.838 10.555 23.888 hybrid contribution -0.768 0.708 -0.639 1.225 sum 12.489 -16.129 9.916 22.681 Atomic orbital electron populations 1.70067 1.07799 1.28691 1.50446 1.25969 0.95956 1.03425 0.93888 0.85175 0.78471 0.76930 0.78801 1.19393 1.20046 1.18571 1.21381 0.94184 0.90718 1.52320 0.91830 1.19867 0.88599 0.84489 0.93725 1.87844 1.35349 1.13995 1.95298 1.22600 0.94584 0.83555 1.01489 1.23093 0.93118 0.98672 0.84184 1.86617 1.43614 1.54578 1.41404 1.23978 0.79070 0.77775 0.89452 1.90706 1.68041 1.37882 1.44193 1.21698 0.95574 1.04288 0.90648 0.82168 1.21602 0.91434 0.81543 1.04829 1.45277 1.23564 1.09400 1.57154 1.19621 0.84906 0.84221 0.78481 1.90755 1.78583 1.23130 1.55823 1.21792 0.96900 0.97823 1.01317 1.22722 0.93186 0.95212 1.02263 0.79337 1.20602 0.89065 0.75212 0.75491 1.93225 1.73241 1.95882 1.54699 1.93206 1.89852 1.63426 1.69477 1.93232 1.96437 1.44203 1.81876 0.92033 0.99262 0.99447 0.90402 0.92967 0.90734 0.88196 0.87970 0.84034 0.75242 0.88773 0.84727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.29 13.29 21.45 0.28 -55.00 16 2 C 0.01 0.35 5.46 84.66 0.46 0.81 16 3 Si 0.98 43.39 29.54 68.60 2.03 45.42 16 4 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 5 H -0.28 -11.66 7.11 99.48 0.71 -10.95 16 6 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 7 C -0.55 -32.16 9.43 25.60 0.24 -31.92 16 8 H 0.06 3.67 7.81 -2.91 -0.02 3.64 16 9 C 0.21 11.52 5.69 71.24 0.41 11.93 16 10 O -0.40 -19.42 10.30 -145.57 -1.50 -20.92 16 11 C 0.05 1.97 6.33 71.98 0.46 2.42 16 12 C 0.08 2.49 5.84 71.98 0.42 2.91 16 13 O -0.35 -10.24 8.62 -48.81 -0.42 -10.66 16 14 C 0.45 10.65 4.73 71.24 0.34 10.99 16 15 O -0.52 -14.26 13.43 21.95 0.29 -13.96 16 16 C -0.10 -1.32 2.57 -11.45 -0.03 -1.35 16 17 H 0.16 1.57 7.65 -2.39 -0.02 1.55 16 18 C 0.13 0.96 6.36 86.49 0.55 1.51 16 19 N -0.70 -9.57 4.86 -467.34 -2.27 -11.85 16 20 C 0.54 10.96 6.50 87.71 0.57 11.53 16 21 O -0.60 -17.81 17.78 -3.03 -0.05 -17.86 16 22 C -0.14 -2.23 4.47 29.71 0.13 -2.10 16 23 C -0.11 -1.29 2.14 -10.65 -0.02 -1.31 16 24 H 0.19 0.43 8.13 -2.39 -0.02 0.41 16 25 C 0.45 7.75 2.70 71.98 0.19 7.94 16 26 F -0.19 -4.47 13.35 44.97 0.60 -3.87 16 27 F -0.18 -3.03 17.05 44.97 0.77 -2.26 16 28 F -0.18 -3.34 16.71 44.97 0.75 -2.59 16 29 H 0.27 14.90 8.31 -92.70 -0.77 14.13 16 30 H -0.01 -0.59 8.14 -2.39 -0.02 -0.61 16 31 H -0.01 -0.71 8.14 -2.38 -0.02 -0.73 16 32 H 0.08 2.55 8.14 -2.38 -0.02 2.53 16 33 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 34 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 35 H 0.10 2.55 8.13 -2.39 -0.02 2.53 16 36 H 0.10 0.73 8.12 -2.39 -0.02 0.71 16 37 H 0.14 -0.17 8.14 -2.39 -0.02 -0.19 16 38 H 0.41 5.05 8.80 -92.71 -0.82 4.23 16 39 H 0.09 1.96 6.34 -2.38 -0.02 1.94 16 40 H 0.13 1.73 8.12 -2.39 -0.02 1.71 16 Total: -1.00 -80.69 348.73 4.48 -76.21 By element: Atomic # 1 Polarization: 3.69 SS G_CDS: 0.28 Total: 3.97 kcal Atomic # 6 Polarization: 9.65 SS G_CDS: 3.72 Total: 13.36 kcal Atomic # 7 Polarization: -64.86 SS G_CDS: -1.99 Total: -66.85 kcal Atomic # 8 Polarization: -61.72 SS G_CDS: -1.68 Total: -63.40 kcal Atomic # 9 Polarization: -10.84 SS G_CDS: 2.12 Total: -8.72 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -80.69 4.48 -76.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873452527.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -271.021 kcal (2) G-P(sol) polarization free energy of solvation -80.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -351.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.480 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -347.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds