Wall clock time and date at job start Tue Mar 31 2020 22:37:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99988 * 2 1 4 4 H 1.48506 * 109.46955 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47446 * 59.99892 * 3 2 1 6 6 H 1.48505 * 109.47171 * 299.99649 * 3 2 1 7 7 C 1.37871 * 119.99720 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00235 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00231 * 0.02562 * 7 2 1 10 10 O 1.42899 * 109.47154 * 180.02562 * 9 7 2 11 11 C 1.42898 * 113.99769 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46992 * 179.97438 * 11 10 9 13 13 O 1.45201 * 109.47316 * 65.00134 * 12 11 10 14 14 C 1.34228 * 117.00229 * 180.02562 * 13 12 11 15 15 O 1.20823 * 119.99876 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99756 * 180.02562 * 14 13 12 17 17 H 1.09003 * 109.60313 * 5.89654 * 16 14 13 18 18 C 1.52920 * 109.60358 * 126.38967 * 16 14 13 19 19 N 1.45753 * 110.48659 * 170.50651 * 18 16 14 20 20 C 1.33356 * 124.10809 * 340.92374 * 19 18 16 21 21 O 1.21279 * 118.24661 * 182.24781 * 20 19 18 22 22 C 1.50173 * 123.50597 * 2.22344 * 20 19 18 23 23 C 1.53073 * 109.89395 * 342.41831 * 22 20 19 24 24 H 1.09002 * 109.67050 * 289.16823 * 23 22 20 25 25 C 1.53000 * 109.70202 * 168.65466 * 23 22 20 26 26 F 1.39898 * 109.46876 * 295.17213 * 25 23 22 27 27 F 1.39891 * 109.47574 * 55.17440 * 25 23 22 28 28 F 1.39903 * 109.46878 * 175.17885 * 25 23 22 29 29 H 0.97002 * 120.00648 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46486 * 299.99751 * 9 7 2 31 31 H 1.08997 * 109.47433 * 59.99372 * 9 7 2 32 32 H 1.09000 * 109.47550 * 299.99239 * 11 10 9 33 33 H 1.08994 * 109.47488 * 59.99993 * 11 10 9 34 34 H 1.09003 * 109.47129 * 184.99907 * 12 11 10 35 35 H 1.09001 * 109.47498 * 304.99983 * 12 11 10 36 36 H 1.08999 * 109.29605 * 290.81469 * 18 16 14 37 37 H 1.08997 * 109.29934 * 50.19185 * 18 16 14 38 38 H 0.97005 * 117.94638 * 160.92418 * 19 18 16 39 39 H 1.09002 * 109.39958 * 222.28947 * 22 20 19 40 40 H 1.08999 * 109.33137 * 102.50617 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 1.2124 6 1 1.8904 2.3964 -1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0017 11 6 1.5649 -4.8754 0.0024 12 6 2.6478 -5.9562 0.0030 13 8 3.3991 -5.8880 1.2437 14 6 4.3938 -6.7750 1.4034 15 8 4.6287 -7.5820 0.5355 16 6 5.2168 -6.7650 2.6658 17 1 4.7970 -6.0470 3.3704 18 6 5.2165 -8.1612 3.2896 19 7 6.1807 -8.2328 4.3803 20 6 7.1889 -7.3756 4.5446 21 8 7.9538 -7.5592 5.4677 22 6 7.4281 -6.1953 3.6474 23 6 6.6624 -6.3755 2.3343 24 1 7.1284 -7.1638 1.7430 25 6 6.6749 -5.0644 1.5458 26 9 5.9694 -4.0868 2.2555 27 9 7.9963 -4.6440 1.3609 28 9 6.0702 -5.2637 0.3001 29 1 -0.4851 -0.8400 -0.0004 30 1 0.6239 -2.5566 0.8904 31 1 0.6245 -2.5571 -0.8896 32 1 0.9444 -4.9819 0.8923 33 1 0.9451 -4.9831 -0.8877 34 1 2.1818 -6.9376 -0.0860 35 1 3.3214 -5.7962 -0.8388 36 1 4.2210 -8.3840 3.6735 37 1 5.4785 -8.8959 2.5282 38 1 6.0828 -8.9490 5.0272 39 1 8.4942 -6.1112 3.4363 40 1 7.0850 -5.2883 4.1452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000873452529.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:23 Heat of formation + Delta-G solvation = -327.905911 kcal Electronic energy + Delta-G solvation = -31144.563314 eV Core-core repulsion = 26123.451875 eV Total energy + Delta-G solvation = -5021.111439 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.31133 -47.81499 -47.71806 -41.37481 -40.23996 -37.67730 -36.90487 -36.19529 -34.33475 -33.07979 -31.17322 -29.99872 -27.45535 -26.52011 -25.30996 -23.17897 -22.59728 -22.34718 -21.41639 -19.94642 -18.75745 -18.70918 -18.34992 -18.05722 -17.22841 -17.13263 -16.90985 -16.52770 -16.32168 -15.59686 -15.27801 -15.06231 -14.82320 -14.60444 -14.47617 -14.15450 -14.08638 -14.02592 -13.85299 -13.80371 -13.75697 -13.59808 -13.16569 -12.96346 -12.57762 -12.38052 -12.02328 -11.95415 -11.86220 -11.77541 -11.36705 -10.78019 -10.75112 -10.64010 -10.43594 -10.34457 -10.12844 -9.70930 -8.97132 -8.67249 -8.30352 -6.49653 -4.18473 1.76130 2.06790 2.17971 2.29837 2.72681 3.27793 3.39682 3.42133 3.45964 3.54710 3.61681 3.86976 4.04238 4.19585 4.25103 4.29658 4.33830 4.50170 4.58357 4.60334 4.82581 4.93536 5.01796 5.06328 5.19025 5.28159 5.29905 5.64941 5.72332 5.87402 6.14853 6.29733 6.65551 6.66463 7.05567 7.46939 7.60614 7.81141 8.11536 8.59473 8.76122 9.51829 10.90777 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014235 B = 0.003269 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.524562 B = 8562.020312 C = 9471.997361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.017 3.983 3 Si 1.083 2.917 4 H -0.286 1.286 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.596 4.596 8 H 0.062 0.938 9 C 0.186 3.814 10 O -0.380 6.380 11 C 0.058 3.942 12 C 0.075 3.925 13 O -0.330 6.330 14 C 0.465 3.535 15 O -0.497 6.497 16 C -0.101 4.101 17 H 0.130 0.870 18 C 0.127 3.873 19 N -0.716 5.716 20 C 0.529 3.471 21 O -0.542 6.542 22 C -0.133 4.133 23 C -0.128 4.128 24 H 0.136 0.864 25 C 0.453 3.547 26 F -0.165 7.165 27 F -0.177 7.177 28 F -0.170 7.170 29 H 0.267 0.733 30 H -0.003 1.003 31 H -0.004 1.004 32 H 0.051 0.949 33 H 0.064 0.936 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.409 0.591 39 H 0.126 0.874 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.277 -19.038 6.465 23.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.186 4.186 3 Si 0.910 3.090 4 H -0.212 1.212 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.634 4.634 8 H 0.080 0.920 9 C 0.111 3.889 10 O -0.300 6.300 11 C -0.019 4.019 12 C 0.002 3.998 13 O -0.245 6.245 14 C 0.306 3.694 15 O -0.385 6.385 16 C -0.121 4.121 17 H 0.148 0.852 18 C 0.002 3.998 19 N -0.370 5.370 20 C 0.315 3.685 21 O -0.420 6.420 22 C -0.173 4.173 23 C -0.148 4.148 24 H 0.154 0.846 25 C 0.398 3.602 26 F -0.147 7.147 27 F -0.158 7.158 28 F -0.151 7.151 29 H 0.077 0.923 30 H 0.015 0.985 31 H 0.014 0.986 32 H 0.069 0.931 33 H 0.082 0.918 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.116 0.884 37 H 0.108 0.892 38 H 0.246 0.754 39 H 0.144 0.856 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 11.747 -17.458 6.473 22.015 hybrid contribution -0.446 -1.825 -0.235 1.893 sum 11.301 -19.282 6.237 23.204 Atomic orbital electron populations 1.70751 1.06839 1.30445 1.46790 1.25934 0.96396 1.02701 0.93525 0.83348 0.74517 0.74020 0.77080 1.21204 1.21102 1.21132 1.21949 0.95573 0.90270 1.55576 0.91984 1.20330 0.89360 0.84960 0.94223 1.87972 1.34572 1.12299 1.95110 1.22370 0.93322 0.85616 1.00628 1.23288 0.93605 0.98893 0.84006 1.86601 1.42780 1.53313 1.41845 1.22763 0.79767 0.78956 0.87885 1.90679 1.67239 1.37910 1.42680 1.21272 0.92930 1.01719 0.96150 0.85166 1.21222 0.94305 0.94032 0.90226 1.45372 1.29263 1.32247 1.30097 1.19723 0.80125 0.83346 0.85259 1.90819 1.44713 1.73799 1.32637 1.21793 1.03950 0.99227 0.92304 1.22619 0.97128 0.95992 0.99063 0.84635 1.20240 0.74202 0.86803 0.78905 1.93284 1.78582 1.65085 1.77720 1.93201 1.35634 1.91503 1.95473 1.93260 1.83179 1.94861 1.43824 0.92286 0.98512 0.98619 0.93120 0.91789 0.90036 0.90078 0.88431 0.89165 0.75371 0.85610 0.85993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -27.75 13.65 55.43 0.76 -27.00 16 2 C 0.02 0.51 5.46 -17.82 -0.10 0.41 16 3 Si 1.08 25.62 29.90 -169.99 -5.08 20.54 16 4 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 6 H -0.29 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.60 -17.72 9.43 -34.44 -0.32 -18.04 16 8 H 0.06 1.88 7.81 -52.48 -0.41 1.47 16 9 C 0.19 4.99 5.00 36.01 0.18 5.17 16 10 O -0.38 -9.08 10.30 -38.80 -0.40 -9.48 16 11 C 0.06 1.01 6.33 37.16 0.24 1.24 16 12 C 0.08 1.10 5.84 37.16 0.22 1.32 16 13 O -0.33 -4.90 10.18 -42.02 -0.43 -5.33 16 14 C 0.47 5.60 4.26 36.01 0.15 5.75 16 15 O -0.50 -6.61 16.00 -18.75 -0.30 -6.91 16 16 C -0.10 -0.84 1.99 -91.63 -0.18 -1.03 16 17 H 0.13 1.03 7.91 -51.93 -0.41 0.62 16 18 C 0.13 0.69 6.44 -4.49 -0.03 0.66 16 19 N -0.72 -4.27 5.45 -61.39 -0.33 -4.60 16 20 C 0.53 4.51 7.71 -11.87 -0.09 4.41 16 21 O -0.54 -6.75 17.78 5.56 0.10 -6.65 16 22 C -0.13 -0.97 5.02 -28.10 -0.14 -1.11 16 23 C -0.13 -1.06 1.94 -90.40 -0.17 -1.24 16 24 H 0.14 0.94 8.13 -51.93 -0.42 0.52 16 25 C 0.45 5.37 2.56 37.16 0.10 5.47 16 26 F -0.17 -2.30 16.26 2.25 0.04 -2.26 16 27 F -0.18 -2.03 16.85 2.25 0.04 -1.99 16 28 F -0.17 -2.51 14.74 2.25 0.03 -2.48 16 29 H 0.27 8.03 7.22 -40.82 -0.29 7.73 16 30 H 0.00 -0.08 8.01 -51.93 -0.42 -0.49 16 31 H 0.00 -0.10 8.01 -51.93 -0.42 -0.52 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 0.93 8.13 -51.93 -0.42 0.50 16 35 H 0.08 1.25 8.13 -51.93 -0.42 0.83 16 36 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.09 0.47 7.73 -51.93 -0.40 0.07 16 38 H 0.41 1.90 8.80 -40.82 -0.36 1.54 16 39 H 0.13 0.80 8.04 -51.93 -0.42 0.38 16 40 H 0.12 0.84 7.69 -51.93 -0.40 0.44 16 LS Contribution 354.46 15.07 5.34 5.34 Total: -1.00 -36.87 354.46 -5.26 -42.12 By element: Atomic # 1 Polarization: 0.52 SS G_CDS: -4.86 Total: -4.34 kcal Atomic # 6 Polarization: 3.19 SS G_CDS: -0.16 Total: 3.03 kcal Atomic # 7 Polarization: -32.02 SS G_CDS: 0.42 Total: -31.60 kcal Atomic # 8 Polarization: -27.34 SS G_CDS: -1.03 Total: -28.37 kcal Atomic # 9 Polarization: -6.84 SS G_CDS: 0.11 Total: -6.73 kcal Atomic # 14 Polarization: 25.62 SS G_CDS: -5.08 Total: 20.54 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.87 -5.26 -42.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873452529.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -285.781 kcal (2) G-P(sol) polarization free energy of solvation -36.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -322.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -327.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds