Wall clock time and date at job start Tue Mar 31 2020 22:37:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 119.99988 * 2 1 4 4 H 1.48506 * 109.46955 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47446 * 59.99892 * 3 2 1 6 6 H 1.48505 * 109.47171 * 299.99649 * 3 2 1 7 7 C 1.37871 * 119.99720 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00235 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00231 * 0.02562 * 7 2 1 10 10 O 1.42899 * 109.47154 * 180.02562 * 9 7 2 11 11 C 1.42898 * 113.99769 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.46992 * 179.97438 * 11 10 9 13 13 O 1.45201 * 109.47316 * 65.00134 * 12 11 10 14 14 C 1.34228 * 117.00229 * 180.02562 * 13 12 11 15 15 O 1.20823 * 119.99876 * 359.97438 * 14 13 12 16 16 C 1.50702 * 119.99756 * 180.02562 * 14 13 12 17 17 H 1.09003 * 109.60313 * 5.89654 * 16 14 13 18 18 C 1.52920 * 109.60358 * 126.38967 * 16 14 13 19 19 N 1.45753 * 110.48659 * 170.50651 * 18 16 14 20 20 C 1.33356 * 124.10809 * 340.92374 * 19 18 16 21 21 O 1.21279 * 118.24661 * 182.24781 * 20 19 18 22 22 C 1.50173 * 123.50597 * 2.22344 * 20 19 18 23 23 C 1.53073 * 109.89395 * 342.41831 * 22 20 19 24 24 H 1.09002 * 109.67050 * 289.16823 * 23 22 20 25 25 C 1.53000 * 109.70202 * 168.65466 * 23 22 20 26 26 F 1.39898 * 109.46876 * 295.17213 * 25 23 22 27 27 F 1.39891 * 109.47574 * 55.17440 * 25 23 22 28 28 F 1.39903 * 109.46878 * 175.17885 * 25 23 22 29 29 H 0.97002 * 120.00648 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46486 * 299.99751 * 9 7 2 31 31 H 1.08997 * 109.47433 * 59.99372 * 9 7 2 32 32 H 1.09000 * 109.47550 * 299.99239 * 11 10 9 33 33 H 1.08994 * 109.47488 * 59.99993 * 11 10 9 34 34 H 1.09003 * 109.47129 * 184.99907 * 12 11 10 35 35 H 1.09001 * 109.47498 * 304.99983 * 12 11 10 36 36 H 1.08999 * 109.29605 * 290.81469 * 18 16 14 37 37 H 1.08997 * 109.29934 * 50.19185 * 18 16 14 38 38 H 0.97005 * 117.94638 * 160.92418 * 19 18 16 39 39 H 1.09002 * 109.39958 * 222.28947 * 22 20 19 40 40 H 1.08999 * 109.33137 * 102.50617 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8904 2.3965 1.2124 6 1 1.8904 2.3964 -1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 8 2.1795 -3.5853 0.0017 11 6 1.5649 -4.8754 0.0024 12 6 2.6478 -5.9562 0.0030 13 8 3.3991 -5.8880 1.2437 14 6 4.3938 -6.7750 1.4034 15 8 4.6287 -7.5820 0.5355 16 6 5.2168 -6.7650 2.6658 17 1 4.7970 -6.0470 3.3704 18 6 5.2165 -8.1612 3.2896 19 7 6.1807 -8.2328 4.3803 20 6 7.1889 -7.3756 4.5446 21 8 7.9538 -7.5592 5.4677 22 6 7.4281 -6.1953 3.6474 23 6 6.6624 -6.3755 2.3343 24 1 7.1284 -7.1638 1.7430 25 6 6.6749 -5.0644 1.5458 26 9 5.9694 -4.0868 2.2555 27 9 7.9963 -4.6440 1.3609 28 9 6.0702 -5.2637 0.3001 29 1 -0.4851 -0.8400 -0.0004 30 1 0.6239 -2.5566 0.8904 31 1 0.6245 -2.5571 -0.8896 32 1 0.9444 -4.9819 0.8923 33 1 0.9451 -4.9831 -0.8877 34 1 2.1818 -6.9376 -0.0860 35 1 3.3214 -5.7962 -0.8388 36 1 4.2210 -8.3840 3.6735 37 1 5.4785 -8.8959 2.5282 38 1 6.0828 -8.9490 5.0272 39 1 8.4942 -6.1112 3.4363 40 1 7.0850 -5.2883 4.1452 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000873452529.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:22 Heat of formation + Delta-G solvation = -354.258483 kcal Electronic energy + Delta-G solvation = -31145.706047 eV Core-core repulsion = 26123.451875 eV Total energy + Delta-G solvation = -5022.254172 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.117 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -51.31080 -48.82771 -48.74495 -42.18842 -41.08899 -39.01143 -38.10210 -37.28877 -35.26451 -34.95713 -32.12790 -31.17368 -28.58107 -28.22428 -26.07163 -24.78674 -24.15495 -23.40636 -22.35442 -20.66666 -19.69186 -19.60568 -19.26341 -19.22602 -18.94679 -18.14900 -17.97725 -17.52674 -17.33958 -16.75222 -16.50397 -16.16838 -15.81804 -15.75702 -15.64240 -15.39108 -15.19568 -15.14370 -14.92605 -14.89149 -14.70959 -14.56333 -14.45509 -14.31347 -13.72229 -13.58402 -13.35786 -13.15523 -12.95983 -12.69027 -12.59752 -12.56718 -12.24529 -11.93742 -11.79286 -11.65846 -11.17566 -10.90583 -10.84871 -10.39281 -10.27262 -8.84175 -6.54985 0.84919 1.29162 1.39969 1.47458 1.51572 1.60801 1.80366 2.10383 2.46868 2.50793 2.54890 2.73065 2.92239 3.02390 3.21536 3.24868 3.35525 3.50131 3.63511 3.73346 3.83612 4.01155 4.03921 4.32077 4.36010 4.38470 4.42232 4.48679 4.54098 4.62097 4.65505 4.88839 5.27829 5.64955 5.66686 5.91153 6.06885 6.33098 6.48479 6.62180 7.00727 7.24501 8.57566 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.014235 B = 0.003269 C = 0.002955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1966.524562 B = 8562.020312 C = 9471.997361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C -0.026 4.026 3 Si 1.129 2.871 4 H -0.276 1.276 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.624 4.624 8 H 0.048 0.952 9 C 0.196 3.804 10 O -0.403 6.403 11 C 0.048 3.952 12 C 0.079 3.921 13 O -0.352 6.352 14 C 0.466 3.534 15 O -0.509 6.509 16 C -0.100 4.100 17 H 0.135 0.865 18 C 0.134 3.866 19 N -0.702 5.702 20 C 0.532 3.468 21 O -0.585 6.585 22 C -0.127 4.127 23 C -0.116 4.116 24 H 0.153 0.847 25 C 0.444 3.556 26 F -0.181 7.181 27 F -0.176 7.176 28 F -0.190 7.190 29 H 0.258 0.742 30 H -0.013 1.013 31 H -0.011 1.011 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.120 0.880 35 H 0.068 0.932 36 H 0.124 0.876 37 H 0.100 0.900 38 H 0.419 0.581 39 H 0.136 0.864 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.705 -19.975 6.948 24.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.224 4.224 3 Si 0.948 3.052 4 H -0.201 1.201 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.662 4.662 8 H 0.066 0.934 9 C 0.121 3.879 10 O -0.323 6.323 11 C -0.028 4.028 12 C 0.006 3.994 13 O -0.268 6.268 14 C 0.308 3.692 15 O -0.398 6.398 16 C -0.120 4.120 17 H 0.153 0.847 18 C 0.010 3.990 19 N -0.355 5.355 20 C 0.319 3.681 21 O -0.466 6.466 22 C -0.167 4.167 23 C -0.135 4.135 24 H 0.171 0.829 25 C 0.390 3.610 26 F -0.162 7.162 27 F -0.157 7.157 28 F -0.172 7.172 29 H 0.067 0.933 30 H 0.005 0.995 31 H 0.006 0.994 32 H 0.079 0.921 33 H 0.100 0.900 34 H 0.137 0.863 35 H 0.086 0.914 36 H 0.142 0.858 37 H 0.118 0.882 38 H 0.257 0.743 39 H 0.154 0.846 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 12.144 -18.453 6.946 23.157 hybrid contribution -0.604 -1.630 -0.429 1.791 sum 11.540 -20.083 6.516 24.062 Atomic orbital electron populations 1.70868 1.07583 1.30002 1.47933 1.27500 0.96492 1.06353 0.92008 0.82800 0.73850 0.70310 0.78223 1.20074 1.19529 1.19555 1.22294 0.95219 0.92256 1.56392 0.93365 1.19986 0.89157 0.85485 0.93240 1.87909 1.34984 1.14146 1.95257 1.22740 0.94791 0.83245 1.02031 1.23228 0.92916 0.99416 0.83815 1.86590 1.43864 1.54624 1.41733 1.23314 0.79095 0.77985 0.88766 1.90670 1.67363 1.38298 1.43457 1.21412 0.92072 1.03880 0.94593 0.84702 1.21328 0.95472 0.92074 0.90172 1.45280 1.28320 1.31734 1.30117 1.19799 0.80015 0.83572 0.84675 1.90810 1.46418 1.74920 1.34447 1.21780 1.04476 0.99029 0.91411 1.22647 0.97494 0.94157 0.99228 0.82908 1.20824 0.73811 0.87939 0.78441 1.93249 1.79020 1.66070 1.77906 1.93197 1.35384 1.91680 1.95461 1.93216 1.83625 1.94978 1.45369 0.93264 0.99502 0.99358 0.92087 0.89960 0.86256 0.91382 0.85760 0.88161 0.74259 0.84554 0.85633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.65 13.65 21.45 0.29 -56.36 16 2 C -0.03 -1.50 5.46 84.65 0.46 -1.04 16 3 Si 1.13 50.85 29.90 68.60 2.05 52.91 16 4 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 5 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 7 C -0.62 -37.74 9.43 25.60 0.24 -37.50 16 8 H 0.05 2.98 7.81 -2.91 -0.02 2.95 16 9 C 0.20 10.78 5.00 71.24 0.36 11.14 16 10 O -0.40 -19.54 10.30 -145.57 -1.50 -21.04 16 11 C 0.05 1.65 6.33 71.98 0.46 2.11 16 12 C 0.08 2.23 5.84 71.98 0.42 2.65 16 13 O -0.35 -10.11 10.18 -48.76 -0.50 -10.61 16 14 C 0.47 10.50 4.26 71.24 0.30 10.80 16 15 O -0.51 -12.63 16.00 21.97 0.35 -12.28 16 16 C -0.10 -1.47 1.99 -11.45 -0.02 -1.49 16 17 H 0.13 1.90 7.91 -2.39 -0.02 1.88 16 18 C 0.13 1.03 6.44 86.49 0.56 1.59 16 19 N -0.70 -6.53 5.45 -467.32 -2.55 -9.08 16 20 C 0.53 8.12 7.71 87.71 0.68 8.80 16 21 O -0.59 -13.97 17.78 -3.03 -0.05 -14.02 16 22 C -0.13 -1.65 5.02 29.71 0.15 -1.50 16 23 C -0.12 -1.73 1.94 -10.65 -0.02 -1.75 16 24 H 0.15 1.77 8.13 -2.39 -0.02 1.75 16 25 C 0.44 10.32 2.56 71.98 0.18 10.50 16 26 F -0.18 -5.04 16.26 44.97 0.73 -4.30 16 27 F -0.18 -3.94 16.85 44.97 0.76 -3.19 16 28 F -0.19 -5.64 14.74 44.97 0.66 -4.98 16 29 H 0.26 15.77 7.22 -92.71 -0.67 15.10 16 30 H -0.01 -0.70 8.01 -2.38 -0.02 -0.72 16 31 H -0.01 -0.62 8.01 -2.39 -0.02 -0.64 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.12 2.42 8.13 -2.39 -0.02 2.40 16 35 H 0.07 2.08 8.13 -2.39 -0.02 2.06 16 36 H 0.12 0.41 8.14 -2.39 -0.02 0.39 16 37 H 0.10 0.70 7.73 -2.39 -0.02 0.68 16 38 H 0.42 2.77 8.80 -92.70 -0.82 1.96 16 39 H 0.14 1.52 8.04 -2.39 -0.02 1.50 16 40 H 0.13 1.58 7.69 -2.39 -0.02 1.56 16 Total: -1.00 -80.48 354.46 4.40 -76.08 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: 0.38 Total: 2.56 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 3.76 Total: 4.30 kcal Atomic # 7 Polarization: -63.18 SS G_CDS: -2.25 Total: -65.44 kcal Atomic # 8 Polarization: -56.25 SS G_CDS: -1.70 Total: -57.95 kcal Atomic # 9 Polarization: -14.62 SS G_CDS: 2.15 Total: -12.47 kcal Atomic # 14 Polarization: 50.85 SS G_CDS: 2.05 Total: 52.91 kcal Total: -80.48 4.40 -76.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000873452529.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -278.181 kcal (2) G-P(sol) polarization free energy of solvation -80.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -358.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -354.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds