Wall clock time and date at job start Tue Mar 31 2020 22:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99839 * 2 1 4 4 H 1.48504 * 109.46867 * 269.99916 * 3 2 1 5 5 H 1.48494 * 109.47641 * 29.99975 * 3 2 1 6 6 H 1.48500 * 109.46951 * 150.00162 * 3 2 1 7 7 C 1.37880 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99931 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99795 * 359.97438 * 7 2 1 10 10 N 1.46905 * 109.47136 * 179.97438 * 9 7 2 11 11 C 1.46958 * 110.99753 * 170.00050 * 10 9 7 12 12 C 1.53053 * 109.35981 * 183.19043 * 11 10 9 13 13 N 1.46962 * 109.36363 * 301.59803 * 12 11 10 14 14 C 1.46902 * 110.99604 * 183.19083 * 13 12 11 15 15 C 1.50706 * 109.46577 * 169.99972 * 14 13 12 16 16 C 1.38258 * 119.99261 * 269.71811 * 15 14 13 17 17 C 1.38223 * 120.02634 * 179.76966 * 16 15 14 18 18 C 1.38234 * 120.01124 * 0.51309 * 17 16 15 19 19 N 1.48016 * 120.00964 * 179.76877 * 18 17 16 20 20 O 1.21801 * 120.00025 * 359.97438 * 19 18 17 21 21 O 1.21797 * 120.00751 * 179.97438 * 19 18 17 22 22 C 1.38333 * 119.98481 * 359.74132 * 18 17 16 23 23 Cl 1.73603 * 120.01266 * 179.97438 * 22 18 17 24 24 C 1.38189 * 119.98998 * 90.00007 * 15 14 13 25 25 C 1.46952 * 110.87866 * 59.32024 * 13 12 11 26 26 C 1.46952 * 110.99968 * 293.80150 * 10 9 7 27 27 H 0.96993 * 119.99937 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46962 * 59.99875 * 9 7 2 29 29 H 1.08998 * 109.47513 * 300.00010 * 9 7 2 30 30 H 1.08999 * 109.49097 * 63.22812 * 11 10 9 31 31 H 1.09000 * 109.48830 * 303.15378 * 11 10 9 32 32 H 1.09004 * 109.48868 * 181.63526 * 12 11 10 33 33 H 1.08996 * 109.49096 * 61.56557 * 12 11 10 34 34 H 1.09000 * 109.46894 * 50.00205 * 14 13 12 35 35 H 1.09000 * 109.47263 * 289.99771 * 14 13 12 36 36 H 1.08003 * 119.99089 * 0.02826 * 16 15 14 37 37 H 1.08002 * 119.99665 * 180.28087 * 17 16 15 38 38 H 1.07997 * 120.00992 * 359.97438 * 24 15 14 39 39 H 1.09000 * 109.48724 * 60.65076 * 25 13 12 40 40 H 1.09001 * 109.48623 * 180.70590 * 25 13 12 41 41 H 1.08996 * 109.48806 * 296.77717 * 26 10 9 42 42 H 1.08994 * 109.49073 * 56.82039 * 26 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0017 10 7 2.2057 -3.6157 0.0015 11 6 1.5211 -4.8939 0.2408 12 6 2.5567 -6.0186 0.3122 13 7 3.3188 -6.0597 -0.9437 14 6 4.2734 -7.1763 -0.9439 15 6 4.8563 -7.3384 -2.3241 16 6 4.2428 -8.1731 -3.2398 17 6 4.7742 -8.3187 -4.5075 18 6 5.9254 -7.6379 -4.8569 19 7 6.4973 -7.7978 -6.2128 20 8 5.9538 -8.5297 -7.0206 21 8 7.5114 -7.1976 -6.5208 22 6 6.5426 -6.8068 -3.9394 23 17 7.9888 -5.9520 -4.3774 24 6 6.0072 -6.6573 -2.6723 25 6 4.0032 -4.7815 -1.1830 26 6 2.9678 -3.6568 -1.2543 27 1 -0.4850 0.8400 0.0004 28 1 0.6241 -2.5574 -0.8880 29 1 0.6248 -2.5563 0.8919 30 1 0.8249 -5.0918 -0.5743 31 1 0.9742 -4.8428 1.1823 32 1 2.0489 -6.9716 0.4607 33 1 3.2364 -5.8348 1.1442 34 1 3.7595 -8.0935 -0.6564 35 1 5.0738 -6.9701 -0.2333 36 1 3.3456 -8.7084 -2.9659 37 1 4.2920 -8.9673 -5.2239 38 1 6.4887 -6.0086 -1.9555 39 1 4.6995 -4.5837 -0.3680 40 1 4.5502 -4.8326 -2.1245 41 1 2.2880 -3.8406 -2.0863 42 1 3.4752 -2.7037 -1.4031 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000877747879.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:59 Heat of formation + Delta-G solvation = 20.690052 kcal Electronic energy + Delta-G solvation = -26691.176136 eV Core-core repulsion = 22700.039608 eV Total energy + Delta-G solvation = -3991.136528 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.29807 -41.09946 -39.85960 -38.00201 -37.59042 -36.78951 -34.74848 -33.39964 -32.36572 -31.77857 -30.31363 -28.53137 -26.76771 -25.12292 -24.62162 -24.12570 -23.30632 -22.48939 -20.67415 -20.48487 -19.77988 -18.68569 -18.50830 -17.56545 -17.19727 -17.06453 -16.49216 -16.08298 -15.82703 -15.78633 -15.40578 -15.36883 -15.14420 -14.83730 -14.64395 -14.05666 -13.54610 -13.39943 -13.20768 -13.07833 -12.97636 -12.82074 -12.71601 -12.66733 -12.55223 -12.37753 -12.28482 -12.25489 -12.11913 -11.93234 -11.58619 -11.45426 -11.20270 -10.65823 -10.61165 -10.21019 -9.38569 -9.04127 -8.22875 -6.33075 -1.38416 -0.27355 0.14446 0.20122 0.72543 1.39869 1.40513 1.52065 2.00721 2.38165 2.96205 3.08725 3.09804 3.29481 3.33868 3.59189 3.71135 3.84415 3.96889 4.20012 4.21538 4.30592 4.38594 4.41111 4.49172 4.58043 4.62903 4.67871 4.74734 4.87053 4.97155 5.02622 5.03563 5.08321 5.11523 5.21435 5.27973 5.30898 5.61820 5.93671 5.99343 6.04849 6.31665 6.43808 6.62191 6.83187 7.36981 8.88273 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013631 B = 0.002665 C = 0.002405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.597894 B =10502.923032 C =11637.729954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.002 3.998 3 Si 0.967 3.033 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.523 4.523 8 H 0.063 0.937 9 C 0.209 3.791 10 N -0.544 5.544 11 C 0.050 3.950 12 C 0.073 3.927 13 N -0.541 5.541 14 C 0.085 3.915 15 C -0.004 4.004 16 C -0.082 4.082 17 C -0.040 4.040 18 C -0.064 4.064 19 N 0.029 4.971 20 O -0.174 6.174 21 O -0.171 6.171 22 C 0.004 3.996 23 Cl -0.021 7.021 24 C -0.107 4.107 25 C 0.066 3.934 26 C 0.069 3.931 27 H 0.264 0.736 28 H -0.043 1.043 29 H 0.005 0.995 30 H 0.020 0.980 31 H 0.072 0.928 32 H 0.112 0.888 33 H 0.046 0.954 34 H 0.127 0.873 35 H 0.068 0.932 36 H 0.187 0.813 37 H 0.178 0.822 38 H 0.166 0.834 39 H 0.047 0.953 40 H 0.084 0.916 41 H 0.011 0.989 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.593 -21.443 -3.362 24.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.196 4.196 3 Si 0.792 3.208 4 H -0.200 1.200 5 H -0.207 1.207 6 H -0.187 1.187 7 C -0.561 4.561 8 H 0.081 0.919 9 C 0.083 3.917 10 N -0.269 5.269 11 C -0.078 4.078 12 C -0.054 4.054 13 N -0.266 5.266 14 C -0.041 4.041 15 C -0.005 4.005 16 C -0.101 4.101 17 C -0.059 4.059 18 C -0.149 4.149 19 N 0.544 4.456 20 O -0.387 6.387 21 O -0.385 6.385 22 C -0.024 4.024 23 Cl 0.009 6.991 24 C -0.127 4.127 25 C -0.062 4.062 26 C -0.060 4.060 27 H 0.073 0.927 28 H -0.025 1.025 29 H 0.023 0.977 30 H 0.039 0.961 31 H 0.090 0.910 32 H 0.130 0.870 33 H 0.064 0.936 34 H 0.145 0.855 35 H 0.086 0.914 36 H 0.204 0.796 37 H 0.195 0.805 38 H 0.184 0.816 39 H 0.065 0.935 40 H 0.102 0.898 41 H 0.029 0.971 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.311 -21.178 -2.746 24.166 hybrid contribution 0.280 1.499 -0.738 1.694 sum 11.592 -19.679 -3.484 23.103 Atomic orbital electron populations 1.70079 1.07742 1.27918 1.51772 1.25908 0.95720 1.03190 0.94821 0.85414 0.78679 0.78369 0.78375 1.19994 1.20733 1.18722 1.21453 0.93579 0.91086 1.50013 0.91894 1.19330 0.90075 0.89057 0.93248 1.62228 1.27320 1.03258 1.34069 1.22220 0.96000 0.89523 1.00084 1.22121 0.95177 0.98544 0.89548 1.62157 1.25948 1.02894 1.35613 1.21308 0.95516 0.96393 0.90886 1.20401 0.91410 0.91531 0.97134 1.21568 1.00571 0.97859 0.90111 1.21394 0.90373 0.95438 0.98670 1.21119 1.01586 1.09082 0.83083 1.43762 1.00050 0.98639 1.03176 1.94507 1.62563 1.35100 1.46504 1.94615 1.13571 1.46352 1.83917 1.20896 0.91626 0.95285 0.94622 1.98469 1.33467 1.74472 1.92725 1.21348 0.96922 1.00833 0.93565 1.22166 0.94804 0.88053 1.01191 1.21940 0.95755 0.98470 0.89832 0.92674 1.02511 0.97697 0.96123 0.90983 0.87037 0.93555 0.85534 0.91388 0.79613 0.80507 0.81648 0.93506 0.89774 0.97082 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.05 13.29 21.45 0.28 -55.76 16 2 C 0.00 0.09 5.46 84.66 0.46 0.56 16 3 Si 0.97 43.88 29.54 68.60 2.03 45.91 16 4 H -0.27 -12.10 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 6 H -0.26 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.52 -29.28 8.47 25.60 0.22 -29.06 16 8 H 0.06 3.44 7.13 -2.91 -0.02 3.42 16 9 C 0.21 11.02 4.72 85.55 0.40 11.42 16 10 N -0.54 -22.37 4.70 -900.31 -4.23 -26.60 16 11 C 0.05 1.62 5.61 86.31 0.48 2.10 16 12 C 0.07 1.55 5.61 86.31 0.48 2.03 16 13 N -0.54 -10.64 4.70 -900.27 -4.23 -14.87 16 14 C 0.09 0.93 5.12 85.56 0.44 1.36 16 15 C 0.00 -0.04 4.89 -19.87 -0.10 -0.14 16 16 C -0.08 -0.80 9.70 22.27 0.22 -0.59 16 17 C -0.04 -0.53 9.55 22.27 0.21 -0.32 16 18 C -0.06 -1.27 6.86 36.40 0.25 -1.02 16 19 N 0.03 0.72 4.45 -46.41 -0.21 0.52 16 20 O -0.17 -4.43 18.45 18.89 0.35 -4.09 16 21 O -0.17 -4.74 16.02 18.89 0.30 -4.44 16 22 C 0.00 0.08 6.32 22.32 0.14 0.22 16 23 Cl -0.02 -0.44 25.94 -2.72 -0.07 -0.51 16 24 C -0.11 -1.55 7.70 22.29 0.17 -1.38 16 25 C 0.07 1.66 5.25 86.31 0.45 2.11 16 26 C 0.07 2.53 5.43 86.31 0.47 3.00 16 27 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 28 H -0.04 -2.49 8.12 -2.39 -0.02 -2.51 16 29 H 0.00 0.28 8.03 -2.39 -0.02 0.26 16 30 H 0.02 0.70 8.14 -2.39 -0.02 0.69 16 31 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 32 H 0.11 1.59 8.07 -2.39 -0.02 1.57 16 33 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.13 0.68 7.97 -2.39 -0.02 0.66 16 35 H 0.07 0.65 8.06 -2.39 -0.02 0.63 16 36 H 0.19 0.69 8.06 -2.91 -0.02 0.67 16 37 H 0.18 1.77 7.61 -2.91 -0.02 1.75 16 38 H 0.17 2.01 7.99 -2.91 -0.02 1.99 16 39 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.08 1.89 5.95 -2.39 -0.01 1.87 16 41 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 42 H 0.06 2.59 6.79 -2.39 -0.02 2.58 16 Total: -1.00 -70.52 361.83 -0.44 -70.96 By element: Atomic # 1 Polarization: -2.45 SS G_CDS: 1.04 Total: -1.41 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: 4.30 Total: -9.71 kcal Atomic # 7 Polarization: -88.33 SS G_CDS: -8.39 Total: -96.72 kcal Atomic # 8 Polarization: -9.17 SS G_CDS: 0.65 Total: -8.52 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -0.07 Total: -0.51 kcal Total: -70.52 -0.44 -70.96 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000877747879.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.651 kcal (2) G-P(sol) polarization free energy of solvation -70.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds