Wall clock time and date at job start Tue Mar 31 2020 22:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99710 * 2 1 4 4 H 1.48502 * 109.47202 * 264.78474 * 3 2 1 5 5 H 1.48501 * 109.47258 * 24.78789 * 3 2 1 6 6 H 1.48498 * 109.47106 * 144.78912 * 3 2 1 7 7 C 1.37879 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99833 * 3.20300 * 7 2 1 9 9 C 1.50700 * 120.00079 * 183.20435 * 7 2 1 10 10 O 1.42900 * 110.64406 * 61.96191 * 9 7 2 11 11 C 1.54586 * 110.72504 * 185.11806 * 9 7 2 12 12 C 1.54000 * 105.14162 * 140.49177 * 11 9 7 13 13 N 1.47898 * 107.22218 * 1.12521 * 12 11 9 14 14 C 1.38557 * 110.99784 * 214.25309 * 13 12 11 15 15 C 1.39559 * 120.52310 * 239.59502 * 14 13 12 16 16 C 1.38288 * 118.32170 * 179.75586 * 15 14 13 17 17 Cl 1.73597 * 120.41697 * 180.22114 * 16 15 14 18 18 N 1.32687 * 119.16608 * 0.52363 * 16 15 14 19 19 C 1.31765 * 120.98522 * 359.71793 * 18 16 15 20 20 C 1.50699 * 119.07019 * 180.02562 * 19 18 16 21 21 H 1.09004 * 110.32884 * 195.72603 * 20 19 18 22 22 C 1.54472 * 110.37480 * 73.47552 * 20 19 18 23 23 C 1.54510 * 104.06331 * 217.18474 * 22 20 19 24 24 C 1.54468 * 104.06367 * 0.02562 * 23 22 20 25 25 O 1.44421 * 110.37559 * 317.96947 * 20 19 18 26 26 N 1.31771 * 121.84928 * 0.02683 * 19 18 16 27 27 C 1.48809 * 105.68177 * 334.90546 * 13 12 11 28 28 H 0.96991 * 119.99893 * 0.02562 * 1 2 3 29 29 H 0.96696 * 113.99857 * 61.70553 * 10 9 7 30 30 H 1.09000 * 110.31048 * 21.57165 * 11 9 7 31 31 H 1.09001 * 110.39408 * 259.45034 * 11 9 7 32 32 H 1.08994 * 109.91397 * 120.57602 * 12 11 9 33 33 H 1.08998 * 109.91406 * 241.67406 * 12 11 9 34 34 H 1.08002 * 120.84317 * 0.02562 * 15 14 13 35 35 H 1.09000 * 110.51014 * 335.83350 * 22 20 19 36 36 H 1.09004 * 110.51097 * 98.40361 * 22 20 19 37 37 H 1.09002 * 110.50732 * 118.64980 * 23 22 20 38 38 H 1.09005 * 110.51122 * 241.34986 * 23 22 20 39 39 H 1.09003 * 110.37748 * 142.80556 * 24 23 22 40 40 H 1.09004 * 110.37143 * 265.03342 * 24 23 22 41 41 H 1.09003 * 110.51863 * 280.54179 * 27 13 12 42 42 H 1.08999 * 110.70073 * 157.49755 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.6068 1.9828 -1.3943 5 1 1.3958 2.6820 0.5870 6 1 3.4872 1.4745 0.8073 7 6 2.0046 -1.1941 0.0005 8 1 1.4659 -2.1286 -0.0513 9 6 3.5098 -1.1950 0.0735 10 8 3.9555 -0.5995 1.2936 11 6 4.0635 -2.6314 -0.0684 12 6 5.3225 -2.4925 -0.9443 13 7 5.4843 -1.0553 -1.2537 14 6 6.0107 -0.8768 -2.5229 15 6 7.2212 -0.2054 -2.7003 16 6 7.7070 -0.0575 -3.9866 17 17 9.2103 0.7633 -4.2693 18 7 7.0068 -0.5457 -5.0024 19 6 5.8643 -1.1703 -4.8007 20 6 5.1046 -1.7082 -5.9859 21 1 4.0779 -1.9412 -5.7036 22 6 5.8057 -2.9642 -6.5490 23 6 5.6250 -2.8411 -8.0786 24 6 4.8367 -1.5249 -8.2587 25 8 5.1237 -0.7545 -7.0703 26 7 5.3673 -1.3378 -3.5918 27 6 4.1223 -0.4653 -1.1484 28 1 -0.4849 0.8400 -0.0004 29 1 3.6632 -1.0659 2.0886 30 1 3.3307 -3.2726 -0.5582 31 1 4.3256 -3.0357 0.9093 32 1 6.1947 -2.8559 -0.4010 33 1 5.1973 -3.0591 -1.8669 34 1 7.7670 0.1850 -1.8541 35 1 6.8640 -2.9603 -6.2879 36 1 5.3249 -3.8690 -6.1772 37 1 6.5939 -2.7763 -8.5736 38 1 5.0534 -3.6850 -8.4648 39 1 5.1801 -0.9954 -9.1474 40 1 3.7682 -1.7291 -8.3287 41 1 3.5452 -0.6731 -2.0496 42 1 4.1802 0.6078 -0.9665 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000884542826.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:38:54 Heat of formation + Delta-G solvation = -18.286747 kcal Electronic energy + Delta-G solvation = -27809.957774 eV Core-core repulsion = 23817.131086 eV Total energy + Delta-G solvation = -3992.826688 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.47314 -39.50094 -38.64571 -37.01919 -35.46568 -33.18835 -32.67688 -32.39423 -32.17459 -29.70028 -28.96698 -28.52905 -25.01962 -24.68392 -23.69254 -22.29887 -21.49261 -20.85976 -19.74616 -18.30821 -17.64904 -17.32721 -16.38583 -16.15216 -15.58371 -15.49524 -15.20995 -14.99818 -14.92362 -14.52491 -14.06504 -13.95740 -13.51934 -13.35987 -12.88390 -12.66928 -12.38375 -12.31913 -12.01172 -11.89261 -11.65578 -11.63230 -11.54737 -11.42576 -11.07763 -10.92712 -10.83941 -10.58088 -10.37403 -10.18746 -10.03942 -9.95803 -9.56643 -9.45765 -9.04486 -8.73341 -8.58822 -8.34705 -6.23869 -4.35432 0.63017 0.76143 1.42061 3.15704 3.28508 3.40084 3.47595 3.61009 3.68264 4.04544 4.26526 4.40263 4.44075 4.61208 4.70416 4.78010 4.99956 5.01128 5.04745 5.10398 5.19236 5.32323 5.37099 5.45143 5.47461 5.51520 5.57225 5.72309 5.77433 5.79489 5.83514 6.09497 6.15102 6.36662 6.46805 6.54607 6.66950 6.74552 6.79065 7.09619 7.31213 7.50799 7.86812 8.19177 8.73338 8.95093 9.40109 10.86592 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011173 B = 0.004018 C = 0.003507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2505.530816 B = 6966.519206 C = 7982.005394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.090 3.910 3 Si 0.865 3.135 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.222 1.222 7 C -0.552 4.552 8 H 0.080 0.920 9 C 0.227 3.773 10 O -0.568 6.568 11 C -0.141 4.141 12 C 0.049 3.951 13 N -0.472 5.472 14 C 0.366 3.634 15 C -0.184 4.184 16 C 0.221 3.779 17 Cl -0.014 7.014 18 N -0.500 5.500 19 C 0.352 3.648 20 C 0.146 3.854 21 H 0.104 0.896 22 C -0.140 4.140 23 C -0.150 4.150 24 C 0.044 3.956 25 O -0.353 6.353 26 N -0.530 5.530 27 C 0.052 3.948 28 H 0.267 0.733 29 H 0.363 0.637 30 H 0.076 0.924 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.053 0.947 34 H 0.164 0.836 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.095 0.905 40 H 0.063 0.937 41 H 0.078 0.922 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.618 -5.439 -11.728 19.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.115 4.115 3 Si 0.692 3.308 4 H -0.213 1.213 5 H -0.224 1.224 6 H -0.145 1.145 7 C -0.589 4.589 8 H 0.098 0.902 9 C 0.187 3.813 10 O -0.374 6.374 11 C -0.180 4.180 12 C -0.078 4.078 13 N -0.196 5.196 14 C 0.129 3.871 15 C -0.209 4.209 16 C 0.049 3.951 17 Cl 0.014 6.986 18 N -0.217 5.217 19 C 0.082 3.918 20 C 0.086 3.914 21 H 0.122 0.878 22 C -0.179 4.179 23 C -0.188 4.188 24 C -0.033 4.033 25 O -0.271 6.271 26 N -0.248 5.248 27 C -0.072 4.072 28 H 0.077 0.923 29 H 0.209 0.791 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.071 0.929 34 H 0.182 0.818 35 H 0.097 0.903 36 H 0.104 0.896 37 H 0.096 0.904 38 H 0.098 0.902 39 H 0.113 0.887 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 14.783 -4.707 -12.547 19.953 hybrid contribution 0.117 0.460 0.345 0.587 sum 14.900 -4.247 -12.202 19.721 Atomic orbital electron populations 1.69915 1.06607 1.27633 1.48021 1.24963 0.94584 0.99549 0.92427 0.87239 0.82189 0.82512 0.78838 1.21253 1.22367 1.14520 1.21303 0.88386 0.95053 1.54161 0.90232 1.19794 0.92829 0.86632 0.82069 1.86525 1.78464 1.56759 1.15620 1.23024 0.95259 1.00504 0.99190 1.22866 0.99609 0.85780 0.99498 1.63098 1.26030 1.14475 1.16014 1.20577 0.89226 0.87832 0.89484 1.22421 0.97900 1.02999 0.97542 1.21873 0.89973 0.93742 0.89530 1.98420 1.27710 1.75536 1.96933 1.67567 1.07876 1.11330 1.34921 1.22387 0.87444 0.90564 0.91422 1.21538 0.97990 0.87910 0.84002 0.87830 1.22922 1.02180 0.97329 0.95448 1.22912 1.01698 0.98476 0.95679 1.23457 0.99159 0.91641 0.89030 1.89261 1.92309 1.30213 1.15329 1.68333 1.35239 1.21765 0.99512 1.23904 0.83848 0.99413 1.00067 0.92319 0.79064 0.90543 0.91391 0.90659 0.92864 0.81803 0.90298 0.89630 0.90357 0.90161 0.88718 0.91834 0.90383 0.90585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.24 13.96 55.43 0.77 -25.47 16 2 C 0.09 2.52 5.47 -17.82 -0.10 2.42 16 3 Si 0.86 21.64 23.87 -169.99 -4.06 17.58 16 4 H -0.29 -7.18 7.06 56.52 0.40 -6.78 16 5 H -0.30 -7.48 7.11 56.52 0.40 -7.07 16 6 H -0.22 -5.45 5.52 56.52 0.31 -5.14 16 7 C -0.55 -14.63 8.83 -34.44 -0.30 -14.93 16 8 H 0.08 2.27 7.84 -52.49 -0.41 1.85 16 9 C 0.23 5.06 0.78 -89.91 -0.07 4.99 16 10 O -0.57 -12.38 10.45 -35.23 -0.37 -12.75 16 11 C -0.14 -2.61 6.25 -25.38 -0.16 -2.77 16 12 C 0.05 0.82 6.59 -2.75 -0.02 0.80 16 13 N -0.47 -8.85 5.28 -168.85 -0.89 -9.74 16 14 C 0.37 6.40 5.44 -154.78 -0.84 5.56 16 15 C -0.18 -2.78 9.91 -39.07 -0.39 -3.17 16 16 C 0.22 3.27 7.33 -17.16 -0.13 3.14 16 17 Cl -0.01 -0.18 29.15 -51.86 -1.51 -1.69 16 18 N -0.50 -7.96 10.13 -7.93 -0.08 -8.04 16 19 C 0.35 5.66 6.57 -157.24 -1.03 4.63 16 20 C 0.15 1.97 3.69 -27.11 -0.10 1.87 16 21 H 0.10 1.38 8.14 -51.93 -0.42 0.95 16 22 C -0.14 -1.44 6.62 -25.17 -0.17 -1.60 16 23 C -0.15 -1.22 7.09 -25.17 -0.18 -1.39 16 24 C 0.04 0.42 7.63 37.93 0.29 0.71 16 25 O -0.35 -4.98 11.17 -35.23 -0.39 -5.38 16 26 N -0.53 -9.31 8.88 -9.98 -0.09 -9.39 16 27 C 0.05 1.16 4.33 -1.74 -0.01 1.15 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.36 6.75 9.09 45.56 0.41 7.16 16 30 H 0.08 1.44 7.70 -51.93 -0.40 1.04 16 31 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 32 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 33 H 0.05 0.88 7.24 -51.93 -0.38 0.50 16 34 H 0.16 2.14 8.06 -52.49 -0.42 1.72 16 35 H 0.08 0.87 7.86 -51.93 -0.41 0.47 16 36 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.08 1.83 7.36 -51.93 -0.38 1.44 16 42 H 0.08 1.79 4.81 -51.93 -0.25 1.54 16 LS Contribution 352.44 15.07 5.31 5.31 Total: -1.00 -31.56 352.44 -9.35 -40.91 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: -4.84 Total: 7.25 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -3.20 Total: 1.40 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: -0.29 Total: -52.64 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: -0.76 Total: -18.12 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.06 Total: 17.58 kcal Atomic # 17 Polarization: -0.18 SS G_CDS: -1.51 Total: -1.69 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.56 -9.35 -40.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884542826.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.619 kcal (2) G-P(sol) polarization free energy of solvation -31.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds