Wall clock time and date at job start Tue Mar 31 2020 22:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38184 * 119.60992 * 2 1 4 4 C 1.38671 * 119.19221 * 179.77787 * 3 2 1 5 5 C 1.38610 * 118.43317 * 0.48905 * 4 3 2 6 6 C 1.50703 * 120.41971 * 179.72923 * 5 4 3 7 7 N 1.46504 * 109.46907 * 105.03016 * 6 5 4 8 8 C 1.34770 * 119.99883 * 179.97438 * 7 6 5 9 9 O 1.21348 * 120.00446 * 0.02562 * 8 7 6 10 10 C 1.49455 * 119.99798 * 179.97438 * 8 7 6 11 11 O 1.21340 * 120.00018 * 0.02562 * 10 8 7 12 12 N 1.34780 * 119.99711 * 180.02562 * 10 8 7 13 13 C 1.46501 * 119.99815 * 180.02562 * 12 10 8 14 14 C 1.52995 * 109.46972 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46978 * 180.02562 * 14 13 12 16 16 C 1.50704 * 109.47395 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99932 * 0.02562 * 16 15 14 18 18 C 1.37873 * 120.00321 * 180.02562 * 16 15 14 19 19 N 1.31512 * 119.99957 * 359.97438 * 18 16 15 20 20 Si 1.86801 * 120.00221 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47180 * 89.99349 * 20 18 16 22 22 H 1.48499 * 109.47332 * 209.99886 * 20 18 16 23 23 H 1.48506 * 109.46873 * 329.99505 * 20 18 16 24 24 C 1.38349 * 119.15480 * 359.75608 * 5 4 3 25 25 Cl 1.73594 * 119.63676 * 179.97438 * 24 5 4 26 26 N 1.31873 * 119.60639 * 180.27792 * 2 1 3 27 27 H 1.09001 * 109.46953 * 269.72059 * 1 2 3 28 28 H 1.09000 * 109.47318 * 29.71657 * 1 2 3 29 29 H 1.09000 * 109.47161 * 149.72288 * 1 2 3 30 30 H 1.08004 * 120.40444 * 0.02562 * 3 2 1 31 31 H 1.07996 * 120.78111 * 180.22649 * 4 3 2 32 32 H 1.09001 * 109.47116 * 225.02391 * 6 5 4 33 33 H 1.08992 * 109.47399 * 345.02709 * 6 5 4 34 34 H 0.97001 * 119.99838 * 359.97438 * 7 6 5 35 35 H 0.97003 * 120.00254 * 0.02562 * 12 10 8 36 36 H 1.09001 * 109.47041 * 300.00233 * 13 12 10 37 37 H 1.09001 * 109.46976 * 60.00508 * 13 12 10 38 38 H 1.09001 * 109.47301 * 299.99918 * 14 13 12 39 39 H 1.09004 * 109.47470 * 60.00355 * 14 13 12 40 40 H 1.09004 * 109.47580 * 299.99643 * 15 14 13 41 41 H 1.09003 * 109.47518 * 60.00082 * 15 14 13 42 42 H 0.97005 * 120.00584 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1898 1.2014 0.0000 4 6 3.5765 1.1913 0.0047 5 6 4.2276 -0.0324 -0.0012 6 6 5.7333 -0.0955 -0.0026 7 7 6.2071 -0.4798 1.3294 8 6 7.5284 -0.6007 1.5656 9 8 8.3257 -0.3909 0.6753 10 6 8.0118 -0.9921 2.9246 11 8 7.2146 -1.2014 3.8151 12 7 9.3332 -1.1125 3.1610 13 6 9.8071 -1.4967 4.4929 14 6 11.3357 -1.5602 4.4917 15 6 11.8305 -1.9621 5.8826 16 6 13.3362 -2.0253 5.8813 17 1 13.8854 -1.8009 4.9788 18 6 14.0128 -2.3697 7.0322 19 7 13.3442 -2.6426 8.1313 20 14 15.8792 -2.4474 7.0308 21 1 16.4302 -1.1189 7.4007 22 1 16.3332 -3.4630 8.0145 23 1 16.3580 -2.8219 5.6759 24 6 3.4775 -1.1949 -0.0063 25 17 4.2800 -2.7342 -0.0143 26 7 2.1586 -1.1465 -0.0056 27 1 -0.3633 -0.0050 1.0277 28 1 -0.3634 0.8925 -0.5094 29 1 -0.3633 -0.8875 -0.5181 30 1 1.6500 2.1369 0.0004 31 1 4.1359 2.1150 0.0085 32 1 6.0653 -0.8333 -0.7330 33 1 6.1377 0.8822 -0.2640 34 1 5.5698 -0.6471 2.0413 35 1 9.9706 -0.9448 2.4492 36 1 9.4750 -0.7590 5.2235 37 1 9.4027 -2.4746 4.7543 38 1 11.6682 -2.2977 3.7611 39 1 11.7399 -0.5822 4.2305 40 1 11.4982 -1.2250 6.6136 41 1 11.4265 -2.9403 6.1435 42 1 13.8201 -2.8845 8.9412 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897666649.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:43:33 Heat of formation + Delta-G solvation = -84.083204 kcal Electronic energy + Delta-G solvation = -25124.049323 eV Core-core repulsion = 21128.369486 eV Total energy + Delta-G solvation = -3995.679837 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.89787 -41.40074 -39.68831 -37.82520 -37.27233 -36.60824 -35.23168 -33.94404 -33.27071 -33.03860 -30.11069 -28.93944 -26.99771 -25.61148 -24.65294 -23.84405 -22.71459 -22.36855 -21.40400 -19.73061 -18.53191 -18.27372 -18.00499 -17.61965 -17.18802 -16.81066 -16.62214 -16.37744 -16.17599 -15.88725 -15.64834 -15.12176 -14.96139 -14.65792 -14.27091 -14.02636 -13.97333 -13.81069 -13.77820 -13.50169 -13.15744 -12.93291 -12.86233 -12.75717 -12.55280 -12.53897 -12.40235 -12.32204 -11.69762 -11.56522 -11.24063 -11.06416 -10.76056 -10.70473 -10.54519 -10.42826 -10.29257 -9.88569 -8.19156 -6.30157 -0.32735 0.04335 0.28438 0.70623 1.29390 1.42495 1.43317 1.54429 2.08446 2.38697 2.43289 2.70439 3.11263 3.14804 3.38881 3.52644 3.57329 3.78833 4.08088 4.08427 4.18246 4.27313 4.46157 4.52591 4.55273 4.70857 4.77460 4.86304 4.91680 4.95128 4.97531 5.02021 5.13984 5.15205 5.22703 5.49304 5.51840 5.70927 5.82388 5.84637 6.22208 6.27280 6.62641 6.64271 6.86750 6.87986 7.39287 8.92662 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.029123 B = 0.001646 C = 0.001641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 961.223452 B =17008.754891 C =17058.161468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.140 3.860 3 C -0.160 4.160 4 C -0.033 4.033 5 C -0.159 4.159 6 C 0.165 3.835 7 N -0.686 5.686 8 C 0.520 3.480 9 O -0.533 6.533 10 C 0.501 3.499 11 O -0.548 6.548 12 N -0.685 5.685 13 C 0.127 3.873 14 C -0.106 4.106 15 C 0.024 3.976 16 C -0.543 4.543 17 H 0.065 0.935 18 C -0.001 4.001 19 N -0.933 5.933 20 Si 0.966 3.034 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.262 1.262 24 C 0.176 3.824 25 Cl -0.040 7.040 26 N -0.512 5.512 27 H 0.091 0.909 28 H 0.108 0.892 29 H 0.071 0.929 30 H 0.183 0.817 31 H 0.181 0.819 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.415 0.585 35 H 0.420 0.580 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.066 0.934 39 H 0.068 0.932 40 H -0.003 1.003 41 H -0.004 1.004 42 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.162 10.932 -21.841 36.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.003 3.997 3 C -0.180 4.180 4 C -0.059 4.059 5 C -0.162 4.162 6 C 0.042 3.958 7 N -0.338 5.338 8 C 0.300 3.700 9 O -0.410 6.410 10 C 0.281 3.719 11 O -0.427 6.427 12 N -0.338 5.338 13 C 0.004 3.996 14 C -0.144 4.144 15 C -0.014 4.014 16 C -0.581 4.581 17 H 0.083 0.917 18 C -0.199 4.199 19 N -0.573 5.573 20 Si 0.790 3.210 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.187 1.187 24 C 0.012 3.988 25 Cl -0.011 7.011 26 N -0.224 5.224 27 H 0.109 0.891 28 H 0.127 0.873 29 H 0.090 0.910 30 H 0.200 0.800 31 H 0.198 0.802 32 H 0.102 0.898 33 H 0.127 0.873 34 H 0.252 0.748 35 H 0.258 0.742 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.015 0.985 41 H 0.014 0.986 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -27.532 9.960 -21.694 36.440 hybrid contribution 1.463 -0.102 0.584 1.579 sum -26.069 9.858 -21.109 34.963 Atomic orbital electron populations 1.20906 0.86083 1.04942 1.04398 1.21912 0.98579 0.87133 0.92089 1.22509 0.94640 1.00409 1.00425 1.22003 0.94949 0.97478 0.91421 1.20485 0.95960 0.92981 1.06809 1.20327 0.88262 1.03576 0.83592 1.45730 1.06076 1.67689 1.14337 1.19832 0.83659 0.78602 0.87886 1.90769 1.54853 1.49584 1.45754 1.20333 0.83616 0.79014 0.88917 1.90758 1.54997 1.50308 1.46601 1.45871 1.06603 1.66632 1.14660 1.21478 0.95349 1.00299 0.82480 1.21639 0.91665 1.01997 0.99056 1.18944 0.95120 0.95127 0.92182 1.21686 0.93144 1.46388 0.96876 0.91728 1.25978 1.03820 0.94864 0.95242 1.70098 1.37602 1.47885 1.01719 0.85439 0.79294 0.77989 0.78265 1.19806 1.21000 1.18660 1.21726 0.90147 0.87483 0.99483 1.98438 1.76827 1.29529 1.96309 1.66878 1.08183 1.32247 1.15125 0.89081 0.87329 0.90985 0.79980 0.80157 0.89757 0.87251 0.74845 0.74242 0.91640 0.91904 0.91501 0.91286 0.98477 0.98608 0.92815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.17 71.24 0.72 0.13 16 2 C 0.14 1.60 6.78 42.54 0.29 1.89 16 3 C -0.16 -1.01 9.74 22.36 0.22 -0.79 16 4 C -0.03 -0.24 9.81 22.46 0.22 -0.02 16 5 C -0.16 -2.09 5.27 -19.75 -0.10 -2.19 16 6 C 0.16 2.36 5.15 85.63 0.44 2.80 16 7 N -0.69 -13.00 5.44 -468.14 -2.55 -15.55 16 8 C 0.52 12.70 7.89 87.27 0.69 13.39 16 9 O -0.53 -14.48 16.48 -3.24 -0.05 -14.53 16 10 C 0.50 14.54 7.89 87.27 0.69 15.23 16 11 O -0.55 -18.55 16.48 -3.22 -0.05 -18.60 16 12 N -0.69 -19.86 5.55 -464.41 -2.58 -22.44 16 13 C 0.13 4.34 5.67 86.38 0.49 4.83 16 14 C -0.11 -4.06 5.27 30.59 0.16 -3.89 16 15 C 0.02 1.23 4.97 29.85 0.15 1.38 16 16 C -0.54 -30.29 9.11 25.60 0.23 -30.05 16 17 H 0.06 3.41 7.74 -2.91 -0.02 3.39 16 18 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 19 N -0.93 -56.57 13.29 21.45 0.28 -56.29 16 20 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 21 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 22 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 23 H -0.26 -11.35 7.11 99.48 0.71 -10.65 16 24 C 0.18 3.18 7.27 84.70 0.62 3.79 16 25 Cl -0.04 -0.81 27.72 -2.72 -0.08 -0.88 16 26 N -0.51 -9.36 10.25 -174.85 -1.79 -11.15 16 27 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.11 -0.01 8.07 -2.39 -0.02 -0.03 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.18 -0.20 8.06 -2.91 -0.02 -0.22 16 31 H 0.18 0.19 8.05 -2.91 -0.02 0.17 16 32 H 0.08 1.36 7.60 -2.39 -0.02 1.34 16 33 H 0.11 1.17 8.00 -2.39 -0.02 1.15 16 34 H 0.41 7.91 7.94 -92.71 -0.74 7.18 16 35 H 0.42 10.78 7.94 -92.71 -0.74 10.05 16 36 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 37 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.07 2.50 8.14 -2.38 -0.02 2.48 16 40 H 0.00 -0.18 8.14 -2.38 -0.02 -0.19 16 41 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 42 H 0.26 15.02 8.31 -92.70 -0.77 14.25 16 Total: -1.00 -73.48 383.36 0.08 -73.40 By element: Atomic # 1 Polarization: 13.65 SS G_CDS: -0.40 Total: 13.24 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 5.28 Total: 6.88 kcal Atomic # 7 Polarization: -98.79 SS G_CDS: -6.63 Total: -105.43 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -0.11 Total: -33.14 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Atomic # 17 Polarization: -0.81 SS G_CDS: -0.08 Total: -0.88 kcal Total: -73.48 0.08 -73.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897666649.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.684 kcal (2) G-P(sol) polarization free energy of solvation -73.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds