Wall clock time and date at job start Tue Mar 31 2020 22:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99872 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00071 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99944 * 180.02562 * 11 10 9 14 14 O 1.45199 * 109.46928 * 180.02562 * 13 11 10 15 15 C 1.34230 * 116.99614 * 180.02562 * 14 13 11 16 16 O 1.20824 * 120.00179 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99717 * 180.02562 * 15 14 13 18 18 H 1.08997 * 115.55168 * 34.41507 * 17 15 14 19 19 C 1.53003 * 117.49605 * 248.74384 * 17 15 14 20 20 C 1.53003 * 117.49838 * 180.08625 * 17 15 14 21 21 H 1.08999 * 117.49775 * 359.97336 * 20 17 15 22 22 C 1.50697 * 117.49804 * 214.97624 * 20 17 15 23 23 C 1.38227 * 119.99204 * 300.00103 * 22 20 17 24 24 C 1.38181 * 120.05464 * 180.02562 * 23 22 20 25 25 C 1.38488 * 120.02518 * 359.96791 * 24 23 22 26 26 F 1.35100 * 120.01489 * 179.97438 * 25 24 23 27 27 C 1.38397 * 119.97492 * 0.02562 * 25 24 23 28 28 C 1.38443 * 119.95194 * 359.76637 * 27 25 24 29 29 F 1.35099 * 120.01598 * 180.23195 * 28 27 25 30 30 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 32 32 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 33 33 H 0.97000 * 120.00420 * 0.02562 * 10 9 7 34 34 H 1.09002 * 109.47152 * 300.00160 * 13 11 10 35 35 H 1.09001 * 109.46980 * 60.00059 * 13 11 10 36 36 H 1.08998 * 117.49559 * 359.97438 * 19 17 15 37 37 H 1.08993 * 117.49805 * 145.02072 * 19 17 15 38 38 H 1.08010 * 119.96744 * 359.97196 * 23 22 20 39 39 H 1.08002 * 119.98471 * 179.97438 * 24 23 22 40 40 H 1.08001 * 120.02435 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 5.3248 -2.8218 -0.0001 12 8 6.1129 -1.9000 -0.0006 13 6 5.8270 -4.2426 -0.0008 14 8 7.2790 -4.2427 -0.0002 15 6 7.8883 -5.4387 -0.0012 16 8 7.2302 -6.4520 -0.0022 17 6 9.3933 -5.5177 0.0000 18 1 9.9048 -4.7329 0.5573 19 6 10.0740 -6.0444 -1.2650 20 6 10.0277 -6.9100 -0.0033 21 1 9.3565 -7.7688 -0.0059 22 6 11.3122 -7.0912 0.7636 23 6 12.4285 -6.3488 0.4270 24 6 13.6071 -6.5143 1.1291 25 6 13.6710 -7.4238 2.1714 26 9 14.8236 -7.5858 2.8574 27 6 12.5539 -8.1676 2.5095 28 6 11.3724 -7.9979 1.8082 29 9 10.2798 -8.7199 2.1402 30 1 -0.4850 0.8401 -0.0004 31 1 3.8751 -0.6798 -0.8895 32 1 3.8745 -0.6810 0.8905 33 1 3.3694 -3.3127 -0.0009 34 1 5.4636 -4.7569 0.8889 35 1 5.4637 -4.7560 -0.8911 36 1 9.4333 -6.3341 -2.0978 37 1 11.0335 -5.6064 -1.5397 38 1 12.3797 -5.6394 -0.3860 39 1 14.4788 -5.9339 0.8649 40 1 12.6029 -8.8775 3.3220 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000910172182.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:47 Heat of formation + Delta-G solvation = -157.812508 kcal Electronic energy + Delta-G solvation = -27135.239744 eV Core-core repulsion = 22552.273333 eV Total energy + Delta-G solvation = -4582.966411 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.52037 -49.44844 -41.01586 -39.83298 -38.92367 -37.35881 -36.16985 -34.40899 -32.45997 -31.46502 -30.93633 -29.64603 -27.41767 -25.19196 -24.68233 -23.38779 -22.18740 -21.47177 -20.50317 -20.15507 -18.88881 -18.31034 -17.65000 -17.56885 -16.83234 -16.66894 -16.51418 -16.44545 -16.13715 -15.78791 -15.67348 -15.17968 -15.05974 -14.89352 -14.69069 -14.29088 -13.92187 -13.41500 -13.24454 -13.04437 -12.93335 -12.80997 -12.44150 -12.35943 -12.15284 -12.12751 -11.98827 -11.32303 -11.13472 -11.09497 -10.88324 -10.78210 -10.72756 -10.02394 -9.65124 -9.56892 -9.39239 -9.08207 -8.84170 -8.30374 -6.26262 -4.29506 0.28575 0.41900 1.82293 2.17112 2.69884 2.98649 3.23536 3.27014 3.30502 3.35932 3.38162 3.69765 3.81559 3.91929 3.97940 4.14756 4.23971 4.28929 4.31062 4.53098 4.61542 4.71213 4.99321 5.07343 5.08041 5.12436 5.18352 5.22557 5.24144 5.34672 5.37447 5.42100 5.47251 5.71909 6.15908 6.19139 6.70108 6.98054 7.05834 7.29026 7.52415 8.01818 8.38324 8.64836 8.76817 9.32654 10.85479 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.024958 B = 0.001702 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.618959 B =16445.601558 C =16832.864732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.877 3.123 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.547 4.547 8 H 0.081 0.919 9 C 0.222 3.778 10 N -0.699 5.699 11 C 0.502 3.498 12 O -0.536 6.536 13 C 0.049 3.951 14 O -0.323 6.323 15 C 0.491 3.509 16 O -0.506 6.506 17 C -0.149 4.149 18 H 0.142 0.858 19 C -0.133 4.133 20 C -0.086 4.086 21 H 0.136 0.864 22 C -0.099 4.099 23 C -0.060 4.060 24 C -0.159 4.159 25 C 0.129 3.871 26 F -0.131 7.131 27 C -0.190 4.190 28 C 0.144 3.856 29 F -0.123 7.123 30 H 0.268 0.732 31 H 0.024 0.976 32 H 0.028 0.972 33 H 0.399 0.601 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.118 0.882 38 H 0.148 0.852 39 H 0.146 0.854 40 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.147 -17.442 0.466 33.116 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.198 1.198 5 H -0.208 1.208 6 H -0.185 1.185 7 C -0.585 4.585 8 H 0.099 0.901 9 C 0.101 3.899 10 N -0.349 5.349 11 C 0.285 3.715 12 O -0.414 6.414 13 C -0.029 4.029 14 O -0.238 6.238 15 C 0.334 3.666 16 O -0.394 6.394 17 C -0.168 4.168 18 H 0.160 0.840 19 C -0.170 4.170 20 C -0.104 4.104 21 H 0.154 0.846 22 C -0.100 4.100 23 C -0.078 4.078 24 C -0.178 4.178 25 C 0.109 3.891 26 F -0.109 7.109 27 C -0.210 4.210 28 C 0.124 3.876 29 F -0.102 7.102 30 H 0.078 0.922 31 H 0.042 0.958 32 H 0.046 0.954 33 H 0.233 0.767 34 H 0.118 0.882 35 H 0.118 0.882 36 H 0.131 0.869 37 H 0.136 0.864 38 H 0.166 0.834 39 H 0.164 0.836 40 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 28.285 -16.945 0.514 32.976 hybrid contribution -0.232 0.264 0.340 0.489 sum 28.053 -16.681 0.854 32.649 Atomic orbital electron populations 1.69876 1.06216 1.27523 1.49091 1.24790 0.94807 0.99192 0.93774 0.86813 0.80570 0.83188 0.79106 1.19777 1.20823 1.18476 1.21067 0.88326 0.95358 1.53731 0.90113 1.19560 0.95379 0.77923 0.97085 1.46070 1.04840 1.11572 1.72466 1.19909 0.83725 0.89388 0.78458 1.90701 1.55323 1.45658 1.49701 1.22864 0.77612 0.97421 1.04964 1.86535 1.21901 1.32155 1.83192 1.22485 0.90253 0.81431 0.72431 1.90685 1.66671 1.36455 1.45578 1.21856 0.88910 0.99782 1.06214 0.83974 1.23283 1.02518 1.00331 0.90867 1.21043 0.95294 0.94698 0.99318 0.84632 1.19162 0.95586 0.98410 0.96879 1.20854 0.90469 0.97641 0.98822 1.21212 1.00153 1.00027 0.96396 1.17330 0.81888 0.97198 0.92641 1.91549 1.46716 1.94464 1.78177 1.21057 0.91618 1.04275 1.04036 1.17072 0.83216 0.92430 0.94846 1.91569 1.51657 1.75513 1.91427 0.92168 0.95848 0.95413 0.76682 0.88187 0.88187 0.86854 0.86439 0.83404 0.83642 0.83155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.96 55.43 0.77 -25.29 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 3 Si 0.88 21.05 27.47 -169.99 -4.67 16.39 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 7 C -0.55 -14.71 9.83 -34.44 -0.34 -15.05 16 8 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 9 C 0.22 5.33 4.50 -5.19 -0.02 5.31 16 10 N -0.70 -13.68 5.55 -61.47 -0.34 -14.02 16 11 C 0.50 9.41 7.91 -10.98 -0.09 9.32 16 12 O -0.54 -12.18 16.50 -14.10 -0.23 -12.42 16 13 C 0.05 0.70 5.94 36.01 0.21 0.91 16 14 O -0.32 -4.76 9.76 -45.90 -0.45 -5.21 16 15 C 0.49 6.16 7.74 36.01 0.28 6.44 16 16 O -0.51 -7.24 16.01 -18.75 -0.30 -7.54 16 17 C -0.15 -1.29 5.93 -91.77 -0.54 -1.84 16 18 H 0.14 1.06 8.14 -51.93 -0.42 0.64 16 19 C -0.13 -0.79 9.57 -26.69 -0.26 -1.05 16 20 C -0.09 -0.65 5.31 -91.73 -0.49 -1.14 16 21 H 0.14 1.22 7.40 -51.93 -0.38 0.84 16 22 C -0.10 -0.69 5.62 -104.55 -0.59 -1.28 16 23 C -0.06 -0.30 9.29 -39.61 -0.37 -0.67 16 24 C -0.16 -0.81 10.02 -39.51 -0.40 -1.21 16 25 C 0.13 0.85 7.30 -39.43 -0.29 0.56 16 26 F -0.13 -0.97 17.27 2.25 0.04 -0.93 16 27 C -0.19 -1.30 10.01 -39.45 -0.39 -1.70 16 28 C 0.14 1.14 7.25 -39.43 -0.29 0.86 16 29 F -0.12 -1.18 16.61 2.25 0.04 -1.14 16 30 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 31 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 32 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 33 H 0.40 6.72 8.32 -40.82 -0.34 6.38 16 34 H 0.10 1.25 8.13 -51.93 -0.42 0.83 16 35 H 0.10 1.22 8.13 -51.93 -0.42 0.80 16 36 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.12 0.38 6.17 -51.93 -0.32 0.06 16 38 H 0.15 0.38 6.02 -52.48 -0.32 0.06 16 39 H 0.15 0.45 8.06 -52.49 -0.42 0.03 16 40 H 0.15 0.83 8.06 -52.49 -0.42 0.40 16 LS Contribution 363.05 15.07 5.47 5.47 Total: -1.00 -34.02 363.05 -7.57 -41.59 By element: Atomic # 1 Polarization: 5.78 SS G_CDS: -4.24 Total: 1.54 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -3.66 Total: 1.56 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: 0.43 Total: -39.31 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.98 Total: -25.16 kcal Atomic # 9 Polarization: -2.15 SS G_CDS: 0.08 Total: -2.07 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -4.67 Total: 16.39 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.02 -7.57 -41.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910172182.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.221 kcal (2) G-P(sol) polarization free energy of solvation -34.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds