Wall clock time and date at job start Tue Mar 31 2020 22:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.46992 * 179.97438 * 9 7 2 11 11 C 1.34779 * 119.99872 * 179.97438 * 10 9 7 12 12 O 1.21278 * 120.00071 * 359.97438 * 11 10 9 13 13 C 1.50703 * 119.99944 * 180.02562 * 11 10 9 14 14 O 1.45199 * 109.46928 * 180.02562 * 13 11 10 15 15 C 1.34230 * 116.99614 * 180.02562 * 14 13 11 16 16 O 1.20824 * 120.00179 * 359.97438 * 15 14 13 17 17 C 1.50706 * 119.99717 * 180.02562 * 15 14 13 18 18 H 1.08997 * 115.55168 * 34.41507 * 17 15 14 19 19 C 1.53003 * 117.49605 * 248.74384 * 17 15 14 20 20 C 1.53003 * 117.49838 * 180.08625 * 17 15 14 21 21 H 1.08999 * 117.49775 * 359.97336 * 20 17 15 22 22 C 1.50697 * 117.49804 * 214.97624 * 20 17 15 23 23 C 1.38227 * 119.99204 * 300.00103 * 22 20 17 24 24 C 1.38181 * 120.05464 * 180.02562 * 23 22 20 25 25 C 1.38488 * 120.02518 * 359.96791 * 24 23 22 26 26 F 1.35100 * 120.01489 * 179.97438 * 25 24 23 27 27 C 1.38397 * 119.97492 * 0.02562 * 25 24 23 28 28 C 1.38443 * 119.95194 * 359.76637 * 27 25 24 29 29 F 1.35099 * 120.01598 * 180.23195 * 28 27 25 30 30 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 32 32 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 33 33 H 0.97000 * 120.00420 * 0.02562 * 10 9 7 34 34 H 1.09002 * 109.47152 * 300.00160 * 13 11 10 35 35 H 1.09001 * 109.46980 * 60.00059 * 13 11 10 36 36 H 1.08998 * 117.49559 * 359.97438 * 19 17 15 37 37 H 1.08993 * 117.49805 * 145.02072 * 19 17 15 38 38 H 1.08010 * 119.96744 * 359.97196 * 23 22 20 39 39 H 1.08002 * 119.98471 * 179.97438 * 24 23 22 40 40 H 1.08001 * 120.02435 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 7 3.9997 -2.5754 -0.0001 11 6 5.3248 -2.8218 -0.0001 12 8 6.1129 -1.9000 -0.0006 13 6 5.8270 -4.2426 -0.0008 14 8 7.2790 -4.2427 -0.0002 15 6 7.8883 -5.4387 -0.0012 16 8 7.2302 -6.4520 -0.0022 17 6 9.3933 -5.5177 0.0000 18 1 9.9048 -4.7329 0.5573 19 6 10.0740 -6.0444 -1.2650 20 6 10.0277 -6.9100 -0.0033 21 1 9.3565 -7.7688 -0.0059 22 6 11.3122 -7.0912 0.7636 23 6 12.4285 -6.3488 0.4270 24 6 13.6071 -6.5143 1.1291 25 6 13.6710 -7.4238 2.1714 26 9 14.8236 -7.5858 2.8574 27 6 12.5539 -8.1676 2.5095 28 6 11.3724 -7.9979 1.8082 29 9 10.2798 -8.7199 2.1402 30 1 -0.4850 0.8401 -0.0004 31 1 3.8751 -0.6798 -0.8895 32 1 3.8745 -0.6810 0.8905 33 1 3.3694 -3.3127 -0.0009 34 1 5.4636 -4.7569 0.8889 35 1 5.4637 -4.7560 -0.8911 36 1 9.4333 -6.3341 -2.0978 37 1 11.0335 -5.6064 -1.5397 38 1 12.3797 -5.6394 -0.3860 39 1 14.4788 -5.9339 0.8649 40 1 12.6029 -8.8775 3.3220 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000910172182.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:23:47 Heat of formation + Delta-G solvation = -178.116651 kcal Electronic energy + Delta-G solvation = -27136.120197 eV Core-core repulsion = 22552.273333 eV Total energy + Delta-G solvation = -4583.846864 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.111 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -50.08069 -50.03167 -41.96135 -40.68993 -40.15720 -38.15358 -37.09832 -36.21362 -34.47213 -31.93113 -31.52344 -31.08597 -29.03311 -26.07664 -25.16834 -24.08462 -23.83614 -22.10899 -21.74630 -21.29515 -19.49567 -19.35498 -19.02138 -18.34198 -18.04335 -17.84873 -17.35111 -17.05720 -16.94094 -16.85390 -16.58481 -16.35959 -16.24956 -15.94269 -15.47652 -15.36049 -14.98081 -14.70349 -14.48451 -14.32737 -13.93205 -13.78667 -13.58911 -13.38142 -13.20249 -13.08674 -12.70937 -12.65330 -12.45955 -11.95804 -11.93574 -11.91437 -11.73219 -11.67889 -11.59285 -10.99220 -10.92714 -10.10648 -10.05605 -9.59478 -8.40391 -6.48297 -0.20715 -0.03109 0.92344 1.16054 1.33900 1.36874 1.47726 1.50058 2.18878 2.28121 2.43949 2.74821 2.83469 2.94980 3.28338 3.32030 3.48080 3.57341 3.59869 3.69869 3.86600 3.90816 4.01908 4.04223 4.08584 4.17775 4.60847 4.73882 4.76130 4.79768 4.83886 4.91934 4.96294 4.99792 5.06771 5.18275 5.22940 5.25130 5.38581 5.70862 6.04783 6.50272 6.54283 6.70760 7.10362 7.25660 8.74145 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.024958 B = 0.001702 C = 0.001663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.618959 B =16445.601558 C =16832.864732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.026 3.974 3 Si 0.938 3.062 4 H -0.264 1.264 5 H -0.274 1.274 6 H -0.258 1.258 7 C -0.550 4.550 8 H 0.061 0.939 9 C 0.232 3.768 10 N -0.697 5.697 11 C 0.506 3.494 12 O -0.577 6.577 13 C 0.057 3.943 14 O -0.340 6.340 15 C 0.490 3.510 16 O -0.529 6.529 17 C -0.164 4.164 18 H 0.157 0.843 19 C -0.108 4.108 20 C -0.088 4.088 21 H 0.115 0.885 22 C -0.102 4.102 23 C -0.051 4.051 24 C -0.149 4.149 25 C 0.116 3.884 26 F -0.138 7.138 27 C -0.195 4.195 28 C 0.119 3.881 29 F -0.141 7.141 30 H 0.273 0.727 31 H 0.018 0.982 32 H 0.017 0.983 33 H 0.413 0.587 34 H 0.120 0.880 35 H 0.125 0.875 36 H 0.114 0.886 37 H 0.154 0.846 38 H 0.181 0.819 39 H 0.172 0.828 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.661 -16.957 -0.505 35.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.174 4.174 3 Si 0.762 3.238 4 H -0.188 1.188 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.588 4.588 8 H 0.079 0.921 9 C 0.109 3.891 10 N -0.349 5.349 11 C 0.291 3.709 12 O -0.457 6.457 13 C -0.020 4.020 14 O -0.256 6.256 15 C 0.335 3.665 16 O -0.419 6.419 17 C -0.183 4.183 18 H 0.175 0.825 19 C -0.144 4.144 20 C -0.106 4.106 21 H 0.133 0.867 22 C -0.103 4.103 23 C -0.069 4.069 24 C -0.168 4.168 25 C 0.097 3.903 26 F -0.116 7.116 27 C -0.215 4.215 28 C 0.099 3.901 29 F -0.120 7.120 30 H 0.082 0.918 31 H 0.036 0.964 32 H 0.035 0.965 33 H 0.249 0.751 34 H 0.138 0.862 35 H 0.142 0.858 36 H 0.132 0.868 37 H 0.172 0.828 38 H 0.198 0.802 39 H 0.189 0.811 40 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 30.801 -16.503 -0.457 34.947 hybrid contribution -0.999 0.013 0.649 1.191 sum 29.802 -16.490 0.192 34.061 Atomic orbital electron populations 1.69982 1.07747 1.28677 1.50482 1.25611 0.95551 1.02754 0.93510 0.85846 0.79276 0.79177 0.79542 1.18842 1.19947 1.18260 1.21281 0.89850 0.94713 1.52934 0.92118 1.19180 0.93421 0.80286 0.96218 1.45871 1.05881 1.10390 1.72723 1.20540 0.82713 0.90953 0.76660 1.90677 1.56155 1.47480 1.51351 1.22746 0.78165 0.93994 1.07094 1.86535 1.21770 1.33645 1.83614 1.23218 0.91633 0.80342 0.71299 1.90674 1.67498 1.36906 1.46816 1.22013 0.86330 1.00917 1.09018 0.82534 1.23534 1.03431 0.97911 0.89567 1.20938 0.95213 0.93514 1.00910 0.86701 1.19232 0.95974 0.98592 0.96531 1.21179 0.89330 0.97225 0.99123 1.21536 1.01060 0.99044 0.95118 1.17530 0.81519 0.97899 0.93364 1.91532 1.47002 1.94600 1.78493 1.21134 0.91591 1.04583 1.04183 1.17345 0.83156 0.93487 0.96089 1.91519 1.52548 1.76139 1.91751 0.91811 0.96429 0.96476 0.75115 0.86202 0.85773 0.86801 0.82829 0.80227 0.81098 0.82753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.92 13.96 21.45 0.30 -54.62 16 2 C 0.03 1.46 5.47 84.66 0.46 1.92 16 3 Si 0.94 43.15 27.47 68.60 1.88 45.03 16 4 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 5 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.26 -11.72 6.54 99.48 0.65 -11.07 16 7 C -0.55 -29.75 9.83 25.60 0.25 -29.50 16 8 H 0.06 3.44 7.84 -2.91 -0.02 3.42 16 9 C 0.23 11.06 4.50 85.63 0.38 11.45 16 10 N -0.70 -26.80 5.55 -466.78 -2.59 -29.39 16 11 C 0.51 18.44 7.91 87.66 0.69 19.13 16 12 O -0.58 -25.83 16.50 15.78 0.26 -25.57 16 13 C 0.06 1.53 5.94 71.24 0.42 1.95 16 14 O -0.34 -9.55 9.76 -45.07 -0.44 -9.99 16 15 C 0.49 11.67 7.74 71.24 0.55 12.23 16 16 O -0.53 -14.76 16.01 21.97 0.35 -14.40 16 17 C -0.16 -2.51 5.93 -11.54 -0.07 -2.58 16 18 H 0.16 1.92 8.14 -2.39 -0.02 1.90 16 19 C -0.11 -0.94 9.57 30.62 0.29 -0.65 16 20 C -0.09 -1.20 5.31 -11.51 -0.06 -1.26 16 21 H 0.11 2.07 7.40 -2.39 -0.02 2.06 16 22 C -0.10 -1.24 5.62 -19.82 -0.11 -1.35 16 23 C -0.05 -0.33 9.29 22.25 0.21 -0.12 16 24 C -0.15 -1.07 10.02 22.32 0.22 -0.84 16 25 C 0.12 1.37 7.30 22.37 0.16 1.53 16 26 F -0.14 -1.89 17.27 44.97 0.78 -1.12 16 27 C -0.20 -2.62 10.01 22.36 0.22 -2.39 16 28 C 0.12 1.86 7.25 22.37 0.16 2.02 16 29 F -0.14 -2.83 16.61 44.97 0.75 -2.08 16 30 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 31 H 0.02 0.87 7.57 -2.39 -0.02 0.85 16 32 H 0.02 0.86 7.20 -2.39 -0.02 0.85 16 33 H 0.41 13.59 8.32 -92.71 -0.77 12.82 16 34 H 0.12 2.78 8.13 -2.39 -0.02 2.76 16 35 H 0.12 2.77 8.13 -2.39 -0.02 2.75 16 36 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.15 0.19 6.17 -2.39 -0.01 0.18 16 38 H 0.18 -0.04 6.02 -2.91 -0.02 -0.06 16 39 H 0.17 0.35 8.06 -2.91 -0.02 0.33 16 40 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 Total: -1.00 -74.66 363.05 5.38 -69.28 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 0.29 Total: 11.33 kcal Atomic # 6 Polarization: 7.74 SS G_CDS: 3.80 Total: 11.54 kcal Atomic # 7 Polarization: -81.72 SS G_CDS: -2.29 Total: -84.01 kcal Atomic # 8 Polarization: -50.14 SS G_CDS: 0.17 Total: -49.96 kcal Atomic # 9 Polarization: -4.72 SS G_CDS: 1.52 Total: -3.20 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 1.88 Total: 45.03 kcal Total: -74.66 5.38 -69.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000910172182.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.836 kcal (2) G-P(sol) polarization free energy of solvation -74.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.496 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds