Wall clock time and date at job start Tue Mar 31 2020 22:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 120.00274 * 2 1 4 4 H 1.48503 * 109.47329 * 270.00635 * 3 2 1 5 5 H 1.48498 * 109.47089 * 30.00350 * 3 2 1 6 6 H 1.48495 * 109.47246 * 150.00066 * 3 2 1 7 7 C 1.37878 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00426 * 172.93082 * 7 2 1 9 9 C 1.50704 * 120.00135 * 352.93387 * 7 2 1 10 10 C 1.53001 * 115.55278 * 84.73229 * 9 7 2 11 11 N 1.46502 * 109.46826 * 65.11221 * 10 9 7 12 12 S 1.65593 * 119.99576 * 164.48062 * 11 10 9 13 13 O 1.42097 * 104.28366 * 308.93022 * 12 11 10 14 14 O 1.42104 * 104.27859 * 181.07288 * 12 11 10 15 15 C 1.81399 * 104.45304 * 65.00291 * 12 11 10 16 16 H 1.09003 * 115.54635 * 325.67207 * 15 12 11 17 17 C 1.52998 * 117.50236 * 111.36982 * 15 12 11 18 18 C 1.52996 * 117.50517 * 179.97438 * 15 12 11 19 19 H 1.08994 * 117.50143 * 144.99076 * 18 15 12 20 20 C 1.50706 * 117.49413 * 0.02562 * 18 15 12 21 21 C 1.38265 * 119.98585 * 300.24905 * 20 18 15 22 22 C 1.38231 * 120.04984 * 180.25812 * 21 20 18 23 23 C 1.38217 * 120.02086 * 359.48978 * 22 21 20 24 24 C 1.38437 * 119.97860 * 0.25914 * 23 22 21 25 25 F 1.35099 * 120.02558 * 179.97438 * 24 23 22 26 26 C 1.38177 * 119.98744 * 119.99792 * 20 18 15 27 27 C 1.53001 * 117.49784 * 230.41191 * 9 7 2 28 28 C 1.53005 * 117.49327 * 299.06647 * 9 7 2 29 29 H 0.96997 * 119.99863 * 5.02310 * 1 2 3 30 30 H 1.08999 * 109.46955 * 305.11529 * 10 9 7 31 31 H 1.09002 * 109.47101 * 185.11473 * 10 9 7 32 32 H 0.96994 * 119.99844 * 344.48138 * 11 10 9 33 33 H 1.08999 * 117.49819 * 0.02562 * 17 15 12 34 34 H 1.08993 * 117.50465 * 214.98369 * 17 15 12 35 35 H 1.07997 * 119.97501 * 0.02594 * 21 20 18 36 36 H 1.07991 * 119.98640 * 179.77362 * 22 21 20 37 37 H 1.08009 * 120.00866 * 180.28070 * 23 22 21 38 38 H 1.08007 * 120.01244 * 0.02562 * 26 20 18 39 39 H 1.09006 * 117.49332 * 215.00469 * 27 9 7 40 40 H 1.08999 * 117.49917 * 0.02562 * 27 9 7 41 41 H 1.08998 * 117.49994 * 359.97438 * 28 9 7 42 42 H 1.09003 * 117.49644 * 144.97923 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0784 -1.1977 -0.1156 9 6 1.2596 -2.4943 0.1594 10 6 0.6776 -3.0840 -1.1268 11 7 1.7689 -3.4567 -2.0305 12 16 1.4739 -4.4583 -3.3158 13 8 0.7955 -5.5693 -2.7460 14 8 2.7424 -4.6144 -3.9368 15 6 0.3555 -3.5086 -4.3825 16 1 -0.3504 -2.8596 -3.8641 17 6 0.9021 -3.0265 -5.7278 18 6 -0.1136 -4.1691 -5.6803 19 1 -1.1284 -3.9553 -6.0157 20 6 0.3884 -5.5594 -5.9743 21 6 1.7460 -5.7936 -6.0911 22 6 2.2076 -7.0672 -6.3660 23 6 1.3127 -8.1101 -6.5141 24 6 -0.0466 -7.8778 -6.3923 25 9 -0.9222 -8.8964 -6.5373 26 6 -0.5081 -6.6005 -6.1220 27 6 1.7680 -3.4740 1.2190 28 6 0.4680 -2.7004 1.4525 29 1 -0.4850 0.8368 -0.0736 30 1 0.0419 -2.3429 -1.6111 31 1 0.0869 -3.9680 -0.8864 32 1 2.6640 -3.1167 -1.8760 33 1 1.9336 -3.2804 -5.9721 34 1 0.5560 -2.0603 -6.0947 35 1 2.4462 -4.9801 -5.9711 36 1 3.2680 -7.2483 -6.4606 37 1 1.6738 -9.1061 -6.7244 38 1 -1.5684 -6.4179 -6.0271 39 1 1.6880 -4.5388 0.9996 40 1 2.6410 -3.1779 1.8007 41 1 0.4864 -1.8957 2.1875 42 1 -0.4676 -3.2559 1.3867 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915177165.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:03 Heat of formation + Delta-G solvation = -37.687170 kcal Electronic energy + Delta-G solvation = -27414.598520 eV Core-core repulsion = 23403.054311 eV Total energy + Delta-G solvation = -4011.544209 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.03694 -39.89001 -37.13200 -37.00625 -36.60708 -35.60843 -33.29116 -32.00966 -31.29606 -30.34090 -25.98594 -24.92510 -24.44625 -23.49464 -22.91496 -21.14457 -20.85960 -19.45155 -18.75238 -18.04324 -17.23003 -16.57486 -16.45397 -16.19679 -15.98037 -15.73100 -15.41694 -15.15552 -14.73293 -14.32429 -14.08121 -13.69310 -13.53591 -13.36993 -12.94677 -12.75083 -12.49858 -12.40824 -12.18206 -11.93987 -11.67320 -11.50418 -11.33555 -11.31302 -11.10582 -11.07235 -11.04127 -11.01428 -10.56137 -10.45743 -10.24250 -9.61025 -9.14620 -9.04653 -8.83713 -8.64902 -8.48281 -8.19768 -6.14154 -4.21183 0.62421 0.82555 1.00793 2.88764 3.21092 3.28981 3.29673 3.33306 3.51486 3.88112 4.01430 4.29941 4.30975 4.36805 4.51374 4.61039 4.81348 4.89870 4.92266 5.08387 5.14358 5.19534 5.29759 5.49625 5.53007 5.65375 5.73553 5.86036 5.87704 5.89780 6.16739 6.22494 6.24279 6.32624 6.38912 6.54345 6.68226 6.74601 6.98720 7.05732 7.36398 7.49370 7.74298 7.78183 8.32162 8.80507 9.45377 10.93892 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019636 B = 0.003206 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.600905 B = 8731.168646 C = 9183.263194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.073 3.927 3 Si 0.889 3.111 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.497 4.497 8 H 0.061 0.939 9 C 0.036 3.964 10 C 0.156 3.844 11 N -1.095 6.095 12 S 2.636 3.364 13 O -0.955 6.955 14 O -0.966 6.966 15 C -0.674 4.674 16 H 0.167 0.833 17 C -0.114 4.114 18 C -0.064 4.064 19 H 0.133 0.867 20 C -0.072 4.072 21 C -0.141 4.141 22 C -0.080 4.080 23 C -0.150 4.150 24 C 0.097 3.903 25 F -0.139 7.139 26 C -0.129 4.129 27 C -0.209 4.209 28 C -0.152 4.152 29 H 0.261 0.739 30 H 0.067 0.933 31 H 0.048 0.952 32 H 0.420 0.580 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.157 0.843 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.140 0.860 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.032 -9.245 -14.062 16.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.534 4.534 8 H 0.080 0.920 9 C 0.034 3.966 10 C 0.031 3.969 11 N -0.857 5.857 12 S 2.726 3.274 13 O -0.945 6.945 14 O -0.956 6.956 15 C -0.781 4.781 16 H 0.185 0.815 17 C -0.151 4.151 18 C -0.084 4.084 19 H 0.151 0.849 20 C -0.073 4.073 21 C -0.159 4.159 22 C -0.098 4.098 23 C -0.169 4.169 24 C 0.078 3.922 25 F -0.117 7.117 26 C -0.147 4.147 27 C -0.246 4.246 28 C -0.191 4.191 29 H 0.071 0.929 30 H 0.085 0.915 31 H 0.067 0.933 32 H 0.256 0.744 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.174 0.826 36 H 0.158 0.842 37 H 0.156 0.844 38 H 0.158 0.842 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.040 -10.072 -14.149 17.368 hybrid contribution -0.053 1.654 0.133 1.660 sum -0.093 -8.418 -14.016 16.350 Atomic orbital electron populations 1.69971 1.05876 1.26880 1.48703 1.24979 0.94815 0.98901 0.94340 0.86643 0.80064 0.83449 0.78190 1.20633 1.21184 1.19749 1.20391 0.93130 0.88599 1.51304 0.92045 1.18893 0.98393 0.93893 0.85443 1.20939 0.87004 0.97017 0.91971 1.55172 1.19390 1.69443 1.41663 1.03951 0.74618 0.74671 0.74131 1.93576 1.77272 1.48443 1.75208 1.93516 1.38769 1.85881 1.77476 1.32936 1.21202 1.19141 1.04775 0.81540 1.22980 0.99800 0.99160 0.93203 1.20727 1.01302 0.90016 0.96313 0.84915 1.19207 0.93440 0.93439 1.01209 1.21861 0.95106 0.99454 0.99492 1.21038 1.00170 0.91649 0.96925 1.21273 0.91414 1.01062 1.03104 1.17615 0.87310 0.84659 1.02593 1.91503 1.68717 1.58239 1.93282 1.20916 1.01116 0.90867 1.01843 1.23026 0.98320 0.95970 1.07283 1.22554 0.92632 1.01211 1.02680 0.92902 0.91458 0.93345 0.74398 0.86272 0.86384 0.82568 0.84232 0.84406 0.84180 0.91336 0.90306 0.89841 0.91609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.08 12.96 55.43 0.72 -22.36 16 2 C 0.07 1.87 5.39 -17.82 -0.10 1.77 16 3 Si 0.89 19.88 29.55 -169.99 -5.02 14.86 16 4 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 7 C -0.50 -12.48 8.47 -34.44 -0.29 -12.77 16 8 H 0.06 1.54 7.82 -52.49 -0.41 1.12 16 9 C 0.04 0.83 1.43 -155.65 -0.22 0.61 16 10 C 0.16 3.29 5.96 -4.04 -0.02 3.27 16 11 N -1.10 -20.51 5.84 -10.61 -0.06 -20.57 16 12 S 2.64 44.76 4.33 -107.50 -0.47 44.29 16 13 O -0.96 -19.15 17.49 -57.54 -1.01 -20.15 16 14 O -0.97 -16.56 14.24 -57.54 -0.82 -17.38 16 15 C -0.67 -9.17 6.48 -26.73 -0.17 -9.34 16 16 H 0.17 2.19 7.93 -51.93 -0.41 1.78 16 17 C -0.11 -1.24 9.50 -26.75 -0.25 -1.50 16 18 C -0.06 -0.73 6.04 -91.79 -0.55 -1.29 16 19 H 0.13 1.20 8.14 -51.93 -0.42 0.78 16 20 C -0.07 -0.91 5.00 -104.63 -0.52 -1.44 16 21 C -0.14 -1.79 7.13 -39.57 -0.28 -2.07 16 22 C -0.08 -0.90 10.04 -39.59 -0.40 -1.30 16 23 C -0.15 -1.65 10.03 -39.52 -0.40 -2.05 16 24 C 0.10 1.20 7.30 -39.42 -0.29 0.91 16 25 F -0.14 -1.72 17.27 2.25 0.04 -1.68 16 26 C -0.13 -1.57 9.72 -39.52 -0.38 -1.96 16 27 C -0.21 -4.45 9.96 -26.69 -0.27 -4.71 16 28 C -0.15 -3.42 9.47 -26.69 -0.25 -3.68 16 29 H 0.26 6.60 8.32 -40.82 -0.34 6.26 16 30 H 0.07 1.45 7.93 -51.93 -0.41 1.04 16 31 H 0.05 0.99 7.64 -51.93 -0.40 0.59 16 32 H 0.42 7.77 8.34 -34.47 -0.29 7.49 16 33 H 0.12 1.23 5.81 -51.93 -0.30 0.93 16 34 H 0.12 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.16 1.92 4.26 -52.49 -0.22 1.70 16 36 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 37 H 0.14 1.16 8.06 -52.48 -0.42 0.74 16 38 H 0.14 1.42 8.06 -52.48 -0.42 1.00 16 39 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 40 H 0.08 1.65 8.14 -51.93 -0.42 1.22 16 41 H 0.08 1.98 8.14 -51.93 -0.42 1.56 16 42 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 LS Contribution 365.99 15.07 5.52 5.52 Total: -1.00 -30.13 365.99 -10.89 -41.02 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -5.38 Total: 12.00 kcal Atomic # 6 Polarization: -31.13 SS G_CDS: -4.41 Total: -35.54 kcal Atomic # 7 Polarization: -43.59 SS G_CDS: 0.66 Total: -42.93 kcal Atomic # 8 Polarization: -35.71 SS G_CDS: -1.83 Total: -37.53 kcal Atomic # 9 Polarization: -1.72 SS G_CDS: 0.04 Total: -1.68 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 44.76 SS G_CDS: -0.47 Total: 44.29 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -30.13 -10.89 -41.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915177165.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.332 kcal (2) G-P(sol) polarization free energy of solvation -30.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds