Wall clock time and date at job start Tue Mar 31 2020 22:22:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86793 * 120.00274 * 2 1 4 4 H 1.48503 * 109.47329 * 270.00635 * 3 2 1 5 5 H 1.48498 * 109.47089 * 30.00350 * 3 2 1 6 6 H 1.48495 * 109.47246 * 150.00066 * 3 2 1 7 7 C 1.37878 * 119.99826 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00426 * 172.93082 * 7 2 1 9 9 C 1.50704 * 120.00135 * 352.93387 * 7 2 1 10 10 C 1.53001 * 115.55278 * 84.73229 * 9 7 2 11 11 N 1.46502 * 109.46826 * 65.11221 * 10 9 7 12 12 S 1.65593 * 119.99576 * 164.48062 * 11 10 9 13 13 O 1.42097 * 104.28366 * 308.93022 * 12 11 10 14 14 O 1.42104 * 104.27859 * 181.07288 * 12 11 10 15 15 C 1.81399 * 104.45304 * 65.00291 * 12 11 10 16 16 H 1.09003 * 115.54635 * 325.67207 * 15 12 11 17 17 C 1.52998 * 117.50236 * 111.36982 * 15 12 11 18 18 C 1.52996 * 117.50517 * 179.97438 * 15 12 11 19 19 H 1.08994 * 117.50143 * 144.99076 * 18 15 12 20 20 C 1.50706 * 117.49413 * 0.02562 * 18 15 12 21 21 C 1.38265 * 119.98585 * 300.24905 * 20 18 15 22 22 C 1.38231 * 120.04984 * 180.25812 * 21 20 18 23 23 C 1.38217 * 120.02086 * 359.48978 * 22 21 20 24 24 C 1.38437 * 119.97860 * 0.25914 * 23 22 21 25 25 F 1.35099 * 120.02558 * 179.97438 * 24 23 22 26 26 C 1.38177 * 119.98744 * 119.99792 * 20 18 15 27 27 C 1.53001 * 117.49784 * 230.41191 * 9 7 2 28 28 C 1.53005 * 117.49327 * 299.06647 * 9 7 2 29 29 H 0.96997 * 119.99863 * 5.02310 * 1 2 3 30 30 H 1.08999 * 109.46955 * 305.11529 * 10 9 7 31 31 H 1.09002 * 109.47101 * 185.11473 * 10 9 7 32 32 H 0.96994 * 119.99844 * 344.48138 * 11 10 9 33 33 H 1.08999 * 117.49819 * 0.02562 * 17 15 12 34 34 H 1.08993 * 117.50465 * 214.98369 * 17 15 12 35 35 H 1.07997 * 119.97501 * 0.02594 * 21 20 18 36 36 H 1.07991 * 119.98640 * 179.77362 * 22 21 20 37 37 H 1.08009 * 120.00866 * 180.28070 * 23 22 21 38 38 H 1.08007 * 120.01244 * 0.02562 * 26 20 18 39 39 H 1.09006 * 117.49332 * 215.00469 * 27 9 7 40 40 H 1.08999 * 117.49917 * 0.02562 * 27 9 7 41 41 H 1.08998 * 117.49994 * 359.97438 * 28 9 7 42 42 H 1.09003 * 117.49644 * 144.97923 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0784 -1.1977 -0.1156 9 6 1.2596 -2.4943 0.1594 10 6 0.6776 -3.0840 -1.1268 11 7 1.7689 -3.4567 -2.0305 12 16 1.4739 -4.4583 -3.3158 13 8 0.7955 -5.5693 -2.7460 14 8 2.7424 -4.6144 -3.9368 15 6 0.3555 -3.5086 -4.3825 16 1 -0.3504 -2.8596 -3.8641 17 6 0.9021 -3.0265 -5.7278 18 6 -0.1136 -4.1691 -5.6803 19 1 -1.1284 -3.9553 -6.0157 20 6 0.3884 -5.5594 -5.9743 21 6 1.7460 -5.7936 -6.0911 22 6 2.2076 -7.0672 -6.3660 23 6 1.3127 -8.1101 -6.5141 24 6 -0.0466 -7.8778 -6.3923 25 9 -0.9222 -8.8964 -6.5373 26 6 -0.5081 -6.6005 -6.1220 27 6 1.7680 -3.4740 1.2190 28 6 0.4680 -2.7004 1.4525 29 1 -0.4850 0.8368 -0.0736 30 1 0.0419 -2.3429 -1.6111 31 1 0.0869 -3.9680 -0.8864 32 1 2.6640 -3.1167 -1.8760 33 1 1.9336 -3.2804 -5.9721 34 1 0.5560 -2.0603 -6.0947 35 1 2.4462 -4.9801 -5.9711 36 1 3.2680 -7.2483 -6.4606 37 1 1.6738 -9.1061 -6.7244 38 1 -1.5684 -6.4179 -6.0271 39 1 1.6880 -4.5388 0.9996 40 1 2.6410 -3.1779 1.8007 41 1 0.4864 -1.8957 2.1875 42 1 -0.4676 -3.2559 1.3867 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915177165.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:02 Heat of formation + Delta-G solvation = -54.788264 kcal Electronic energy + Delta-G solvation = -27415.340079 eV Core-core repulsion = 23403.054311 eV Total energy + Delta-G solvation = -4012.285768 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.96898 -40.79167 -38.82034 -38.18511 -37.78309 -37.00905 -34.86498 -33.92347 -32.17610 -31.24559 -27.82099 -26.65567 -25.36184 -24.49715 -23.83087 -22.90842 -21.76817 -21.23175 -20.07342 -19.10991 -18.55817 -18.05360 -17.52453 -17.31640 -17.03645 -16.87567 -16.66586 -16.60144 -16.13933 -15.89789 -15.30990 -15.00932 -14.58430 -14.52492 -14.30569 -14.07294 -13.88812 -13.60992 -13.48762 -13.14354 -13.05354 -12.99830 -12.93251 -12.81346 -12.56402 -12.31559 -12.22474 -12.11100 -12.02616 -11.96829 -11.58142 -11.38447 -10.84443 -10.47204 -10.19402 -10.00275 -9.96352 -9.75454 -8.07300 -6.18788 -0.67027 -0.08193 0.10551 1.44075 1.48628 1.55977 1.72400 2.17262 2.45418 2.55481 2.78487 2.98907 3.20403 3.32534 3.40110 3.50407 3.52684 3.69047 3.81617 3.98822 4.04956 4.15983 4.19468 4.33860 4.54020 4.58388 4.63056 4.66145 4.71110 4.79473 4.80699 4.90676 4.98916 5.01238 5.02933 5.26911 5.27456 5.31375 5.33985 5.61972 5.70471 5.80642 5.80945 6.24485 6.42724 6.86577 7.49643 9.00324 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019636 B = 0.003206 C = 0.003048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.600905 B = 8731.168646 C = 9183.263194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.034 3.966 3 Si 0.944 3.056 4 H -0.273 1.273 5 H -0.289 1.289 6 H -0.273 1.273 7 C -0.507 4.507 8 H 0.057 0.943 9 C 0.015 3.985 10 C 0.166 3.834 11 N -1.102 6.102 12 S 2.639 3.361 13 O -0.993 6.993 14 O -0.972 6.972 15 C -0.684 4.684 16 H 0.172 0.828 17 C -0.102 4.102 18 C -0.055 4.055 19 H 0.161 0.839 20 C -0.088 4.088 21 C -0.158 4.158 22 C -0.087 4.087 23 C -0.149 4.149 24 C 0.080 3.920 25 F -0.143 7.143 26 C -0.139 4.139 27 C -0.193 4.193 28 C -0.158 4.158 29 H 0.261 0.739 30 H 0.058 0.942 31 H 0.049 0.951 32 H 0.419 0.581 33 H 0.124 0.876 34 H 0.146 0.854 35 H 0.157 0.843 36 H 0.163 0.837 37 H 0.163 0.837 38 H 0.156 0.844 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.065 0.935 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.306 -9.055 -15.541 17.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.168 4.168 3 Si 0.770 3.230 4 H -0.199 1.199 5 H -0.215 1.215 6 H -0.198 1.198 7 C -0.544 4.544 8 H 0.075 0.925 9 C 0.013 3.987 10 C 0.040 3.960 11 N -0.861 5.861 12 S 2.734 3.266 13 O -0.983 6.983 14 O -0.963 6.963 15 C -0.794 4.794 16 H 0.190 0.810 17 C -0.139 4.139 18 C -0.074 4.074 19 H 0.179 0.821 20 C -0.089 4.089 21 C -0.177 4.177 22 C -0.105 4.105 23 C -0.167 4.167 24 C 0.061 3.939 25 F -0.121 7.121 26 C -0.157 4.157 27 C -0.231 4.231 28 C -0.196 4.196 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.068 0.932 32 H 0.254 0.746 33 H 0.142 0.858 34 H 0.164 0.836 35 H 0.174 0.826 36 H 0.181 0.819 37 H 0.180 0.820 38 H 0.173 0.827 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.084 0.916 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.274 -9.909 -15.592 18.476 hybrid contribution -0.118 1.537 0.529 1.629 sum 0.155 -8.373 -15.063 17.234 Atomic orbital electron populations 1.70059 1.06847 1.27399 1.49607 1.25563 0.95482 1.01438 0.94273 0.85776 0.78769 0.80129 0.78295 1.19889 1.21455 1.19785 1.20608 0.93097 0.89724 1.51014 0.92513 1.19042 0.99043 0.94086 0.86555 1.20669 0.87356 0.96592 0.91402 1.55145 1.18852 1.69379 1.42731 1.03643 0.74788 0.74189 0.73980 1.93526 1.77793 1.50542 1.76411 1.93504 1.39576 1.86028 1.77178 1.32571 1.21398 1.20190 1.05265 0.81033 1.23286 1.00221 1.00339 0.90084 1.20990 1.02986 0.89698 0.93762 0.82118 1.19397 0.93599 0.94139 1.01779 1.22066 0.95385 1.00186 1.00026 1.21388 1.01540 0.91247 0.96337 1.21595 0.90924 1.02259 1.01967 1.17872 0.87929 0.84799 1.03318 1.91490 1.68899 1.58342 1.93391 1.21177 1.02078 0.90878 1.01579 1.23017 0.97672 0.96356 1.06008 1.22500 0.93713 1.01209 1.02202 0.92969 0.92392 0.93226 0.74591 0.85825 0.83632 0.82596 0.81940 0.81963 0.82650 0.90006 0.90071 0.91639 0.90564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.41 12.96 21.45 0.28 -47.13 16 2 C 0.03 1.70 5.39 84.65 0.46 2.16 16 3 Si 0.94 40.50 29.55 68.60 2.03 42.52 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 5 H -0.29 -12.42 7.11 99.48 0.71 -11.72 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.51 -25.43 8.47 25.60 0.22 -25.21 16 8 H 0.06 2.83 7.82 -2.91 -0.02 2.81 16 9 C 0.01 0.67 1.43 -52.92 -0.08 0.60 16 10 C 0.17 7.00 5.96 86.38 0.52 7.51 16 11 N -1.10 -41.13 5.84 -187.48 -1.09 -42.22 16 12 S 2.64 88.36 4.33 -56.49 -0.24 88.12 16 13 O -0.99 -39.89 17.49 -127.65 -2.23 -42.12 16 14 O -0.97 -32.74 14.24 -127.65 -1.82 -34.56 16 15 C -0.68 -17.49 6.48 30.59 0.20 -17.29 16 16 H 0.17 4.27 7.93 -2.39 -0.02 4.25 16 17 C -0.10 -1.95 9.50 30.58 0.29 -1.66 16 18 C -0.05 -1.13 6.04 -11.55 -0.07 -1.20 16 19 H 0.16 2.37 8.14 -2.39 -0.02 2.35 16 20 C -0.09 -2.10 5.00 -19.87 -0.10 -2.20 16 21 C -0.16 -3.81 7.13 22.27 0.16 -3.65 16 22 C -0.09 -1.84 10.04 22.26 0.22 -1.61 16 23 C -0.15 -3.06 10.03 22.31 0.22 -2.83 16 24 C 0.08 1.88 7.30 22.37 0.16 2.04 16 25 F -0.14 -3.41 17.27 44.97 0.78 -2.63 16 26 C -0.14 -3.21 9.72 22.31 0.22 -2.99 16 27 C -0.19 -8.14 9.96 30.62 0.30 -7.83 16 28 C -0.16 -7.11 9.47 30.62 0.29 -6.82 16 29 H 0.26 13.18 8.32 -92.71 -0.77 12.41 16 30 H 0.06 2.51 7.93 -2.39 -0.02 2.50 16 31 H 0.05 2.04 7.64 -2.39 -0.02 2.02 16 32 H 0.42 15.55 8.34 -96.75 -0.81 14.74 16 33 H 0.12 2.28 5.81 -2.39 -0.01 2.26 16 34 H 0.15 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.16 3.65 4.26 -2.91 -0.01 3.63 16 36 H 0.16 2.51 8.06 -2.92 -0.02 2.48 16 37 H 0.16 2.39 8.06 -2.91 -0.02 2.36 16 38 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 39 H 0.08 3.21 8.14 -2.38 -0.02 3.19 16 40 H 0.08 3.34 8.14 -2.39 -0.02 3.32 16 41 H 0.06 3.15 8.14 -2.39 -0.02 3.13 16 42 H 0.08 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -63.66 365.99 0.96 -62.71 By element: Atomic # 1 Polarization: 36.05 SS G_CDS: 0.25 Total: 36.30 kcal Atomic # 6 Polarization: -64.00 SS G_CDS: 3.01 Total: -60.98 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -0.82 Total: -89.35 kcal Atomic # 8 Polarization: -72.63 SS G_CDS: -4.05 Total: -76.68 kcal Atomic # 9 Polarization: -3.41 SS G_CDS: 0.78 Total: -2.63 kcal Atomic # 14 Polarization: 40.50 SS G_CDS: 2.03 Total: 42.52 kcal Atomic # 16 Polarization: 88.36 SS G_CDS: -0.24 Total: 88.12 kcal Total: -63.66 0.96 -62.71 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915177165.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.920 kcal (2) G-P(sol) polarization free energy of solvation -63.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds