Wall clock time and date at job start Tue Mar 31 2020 22:22:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00509 * 2 1 4 4 H 1.48494 * 109.47047 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46929 * 300.00177 * 3 2 1 6 6 H 1.48499 * 109.46853 * 59.99865 * 3 2 1 7 7 C 1.37874 * 119.99395 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99761 * 172.57175 * 7 2 1 9 9 C 1.50710 * 120.00448 * 352.56550 * 7 2 1 10 10 C 1.52994 * 115.54440 * 84.73669 * 9 7 2 11 11 N 1.46500 * 109.47157 * 65.13099 * 10 9 7 12 12 S 1.65602 * 120.00006 * 164.38816 * 11 10 9 13 13 O 1.42107 * 104.27916 * 308.93083 * 12 11 10 14 14 O 1.42095 * 104.27675 * 181.07374 * 12 11 10 15 15 C 1.81396 * 104.45102 * 64.99826 * 12 11 10 16 16 H 1.09009 * 115.55881 * 39.30912 * 15 12 11 17 17 C 1.52999 * 117.50229 * 253.62285 * 15 12 11 18 18 C 1.52996 * 60.00020 * 252.50844 * 17 15 12 19 19 H 1.08998 * 117.50100 * 107.48959 * 18 17 15 20 20 C 1.50704 * 117.50018 * 252.48698 * 18 17 15 21 21 C 1.38266 * 119.98372 * 8.46975 * 20 18 17 22 22 C 1.38233 * 120.04966 * 179.76613 * 21 20 18 23 23 C 1.38217 * 120.02188 * 0.51552 * 22 21 20 24 24 C 1.38441 * 119.97654 * 359.73715 * 23 22 21 25 25 F 1.35100 * 120.02453 * 179.97438 * 24 23 22 26 26 C 1.38171 * 119.98712 * 188.74765 * 20 18 17 27 27 C 1.52999 * 117.49786 * 230.40951 * 9 7 2 28 28 C 1.53003 * 117.49747 * 299.07211 * 9 7 2 29 29 H 0.97006 * 119.99316 * 5.01660 * 1 2 3 30 30 H 1.08992 * 109.47576 * 305.12670 * 10 9 7 31 31 H 1.09005 * 109.46549 * 185.12602 * 10 9 7 32 32 H 0.96991 * 120.00283 * 344.39092 * 11 10 9 33 33 H 1.09000 * 117.50046 * 145.01925 * 17 15 12 34 34 H 1.08996 * 117.52060 * 359.97438 * 17 15 12 35 35 H 1.07995 * 119.97866 * 0.02676 * 21 20 18 36 36 H 1.07999 * 119.98885 * 180.25462 * 22 21 20 37 37 H 1.08001 * 120.00884 * 179.76314 * 23 22 21 38 38 H 1.07993 * 120.01776 * 0.02562 * 26 20 18 39 39 H 1.09002 * 117.49247 * 214.99686 * 27 9 7 40 40 H 1.08999 * 117.49901 * 0.02562 * 27 9 7 41 41 H 1.09004 * 117.49572 * 359.96967 * 28 9 7 42 42 H 1.08990 * 117.49663 * 144.97082 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0777 -1.1980 -0.1215 9 6 1.2603 -2.4939 0.1678 10 6 0.6714 -3.0875 -1.1134 11 7 1.7576 -3.4635 -2.0217 12 16 1.4560 -4.4710 -3.3009 13 8 0.7817 -5.5800 -2.7222 14 8 2.7211 -4.6290 -3.9284 15 6 0.3308 -3.5268 -4.3653 16 1 0.5489 -2.4624 -4.4532 17 6 -1.1388 -3.9514 -4.3924 18 6 -0.2383 -4.2353 -5.5962 19 1 0.0634 -5.2688 -5.7664 20 6 -0.4547 -3.4086 -6.8375 21 6 -1.3123 -2.3245 -6.8049 22 6 -1.5081 -1.5623 -7.9413 23 6 -0.8548 -1.8897 -9.1146 24 6 0.0001 -2.9780 -9.1497 25 9 0.6388 -3.2992 -10.2961 26 6 0.1995 -3.7376 -8.0091 27 6 1.7746 -3.4702 1.2276 28 6 0.4758 -2.6958 1.4657 29 1 -0.4849 0.8369 -0.0735 30 1 0.0332 -2.3479 -1.5967 31 1 0.0818 -3.9707 -0.8669 32 1 2.6534 -3.1223 -1.8739 33 1 -1.8876 -3.1663 -4.4980 34 1 -1.4300 -4.7982 -3.7710 35 1 -1.8263 -2.0704 -5.8897 36 1 -2.1750 -0.7133 -7.9137 37 1 -1.0108 -1.2963 -10.0034 38 1 0.8656 -4.5873 -8.0357 39 1 1.6933 -4.5356 1.0120 40 1 2.6509 -3.1723 1.8034 41 1 0.4983 -1.8887 2.1981 42 1 -0.4601 -3.2513 1.4068 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915177173.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:08 Heat of formation + Delta-G solvation = -43.350515 kcal Electronic energy + Delta-G solvation = -26757.397513 eV Core-core repulsion = 22745.607723 eV Total energy + Delta-G solvation = -4011.789790 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.12119 -39.86294 -37.20865 -37.00647 -36.61437 -35.65644 -33.27470 -32.01196 -31.38575 -30.44792 -25.98618 -24.91243 -24.52233 -23.58244 -22.80925 -21.15660 -20.90580 -19.45771 -18.81240 -17.95246 -17.20153 -16.88277 -16.42201 -16.38014 -16.06372 -15.80791 -15.59287 -14.97177 -14.72448 -14.23627 -14.14250 -13.73678 -13.66605 -13.16922 -12.90408 -12.83135 -12.45821 -12.41123 -12.18038 -12.07114 -11.81983 -11.70939 -11.38657 -11.35055 -11.22116 -11.07352 -11.06031 -10.99506 -10.58611 -10.49273 -10.25186 -9.60678 -9.21390 -9.06644 -8.88848 -8.64771 -8.48161 -8.19859 -6.14797 -4.21311 0.56882 0.82645 0.91465 2.84921 3.20094 3.24180 3.30000 3.34016 3.48804 3.82515 4.05840 4.27889 4.30880 4.34444 4.41772 4.49804 4.74053 4.79583 4.86495 4.96360 5.11500 5.14149 5.28503 5.42352 5.50991 5.64819 5.72546 5.78984 5.81929 5.86431 6.02995 6.19890 6.24067 6.34053 6.39051 6.54636 6.59254 6.74112 7.00525 7.05217 7.36817 7.49324 7.74120 7.78130 8.32136 8.80609 9.45345 10.93156 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012036 B = 0.003337 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.779130 B = 8388.788554 C = 9660.369669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.074 3.926 3 Si 0.888 3.112 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.283 1.283 7 C -0.496 4.496 8 H 0.061 0.939 9 C 0.036 3.964 10 C 0.160 3.840 11 N -1.094 6.094 12 S 2.638 3.362 13 O -0.960 6.960 14 O -0.967 6.967 15 C -0.667 4.667 16 H 0.165 0.835 17 C -0.112 4.112 18 C -0.075 4.075 19 H 0.126 0.874 20 C -0.023 4.023 21 C -0.124 4.124 22 C -0.087 4.087 23 C -0.157 4.157 24 C 0.100 3.900 25 F -0.140 7.140 26 C -0.145 4.145 27 C -0.209 4.209 28 C -0.152 4.152 29 H 0.260 0.740 30 H 0.069 0.931 31 H 0.048 0.952 32 H 0.420 0.580 33 H 0.116 0.884 34 H 0.124 0.876 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.139 0.861 39 H 0.068 0.932 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.370 -4.941 -14.164 15.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.130 4.130 3 Si 0.715 3.285 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.534 4.534 8 H 0.080 0.920 9 C 0.034 3.966 10 C 0.034 3.966 11 N -0.855 5.855 12 S 2.728 3.272 13 O -0.950 6.950 14 O -0.957 6.957 15 C -0.773 4.773 16 H 0.183 0.817 17 C -0.149 4.149 18 C -0.094 4.094 19 H 0.143 0.857 20 C -0.023 4.023 21 C -0.142 4.142 22 C -0.105 4.105 23 C -0.176 4.176 24 C 0.080 3.920 25 F -0.118 7.118 26 C -0.164 4.164 27 C -0.246 4.246 28 C -0.191 4.191 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.256 0.744 33 H 0.135 0.865 34 H 0.142 0.858 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.157 0.843 39 H 0.087 0.913 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.355 -5.747 -14.306 16.321 hybrid contribution 0.618 1.945 -0.291 2.062 sum -4.737 -3.801 -14.597 15.810 Atomic orbital electron populations 1.69981 1.05834 1.26711 1.48829 1.24962 0.94803 0.98839 0.94352 0.86611 0.80412 0.83823 0.77619 1.19648 1.21109 1.20937 1.20440 0.93242 0.88651 1.51056 0.92038 1.18911 0.98299 0.93877 0.85549 1.20908 0.87000 0.97034 0.91664 1.55154 1.19550 1.69125 1.41722 1.03926 0.74360 0.74669 0.74293 1.93573 1.77569 1.48791 1.75031 1.93564 1.38623 1.85881 1.77650 1.33029 1.13261 1.16285 1.14715 0.81744 1.23020 0.89507 1.03996 0.98384 1.20783 1.03917 0.98250 0.86490 0.85663 1.18834 0.95744 0.95149 0.92598 1.21228 0.98748 0.94949 0.99297 1.21023 0.98542 0.99190 0.91701 1.21183 0.98706 0.97541 1.00121 1.17634 0.95490 0.96533 0.82296 1.91506 1.80150 1.92368 1.47810 1.20990 1.02166 1.01678 0.91559 1.23023 0.98229 0.95971 1.07395 1.22546 0.92667 1.01182 1.02683 0.92994 0.91240 0.93348 0.74373 0.86536 0.85764 0.84677 0.84678 0.84708 0.84327 0.91326 0.90389 0.89934 0.91616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.73 12.97 55.43 0.72 -22.01 16 2 C 0.07 1.87 5.38 -17.82 -0.10 1.77 16 3 Si 0.89 19.89 29.55 -169.99 -5.02 14.86 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.50 -12.35 8.47 -34.44 -0.29 -12.64 16 8 H 0.06 1.54 7.82 -52.48 -0.41 1.13 16 9 C 0.04 0.81 1.43 -155.66 -0.22 0.58 16 10 C 0.16 3.20 5.96 -4.04 -0.02 3.18 16 11 N -1.09 -19.70 5.84 -10.62 -0.06 -19.76 16 12 S 2.64 42.24 5.82 -107.50 -0.63 41.61 16 13 O -0.96 -17.18 16.80 -57.54 -0.97 -18.14 16 14 O -0.97 -17.87 18.08 -57.54 -1.04 -18.91 16 15 C -0.67 -8.56 6.13 -26.73 -0.16 -8.73 16 16 H 0.16 2.08 8.14 -51.92 -0.42 1.66 16 17 C -0.11 -1.20 9.49 -26.73 -0.25 -1.45 16 18 C -0.07 -0.82 5.80 -91.77 -0.53 -1.36 16 19 H 0.13 1.19 8.14 -51.93 -0.42 0.77 16 20 C -0.02 -0.25 5.61 -104.63 -0.59 -0.83 16 21 C -0.12 -1.22 9.30 -39.57 -0.37 -1.59 16 22 C -0.09 -0.76 10.04 -39.59 -0.40 -1.16 16 23 C -0.16 -1.45 10.03 -39.51 -0.40 -1.85 16 24 C 0.10 1.08 7.30 -39.42 -0.29 0.79 16 25 F -0.14 -1.59 17.27 2.25 0.04 -1.56 16 26 C -0.15 -1.57 9.72 -39.52 -0.38 -1.95 16 27 C -0.21 -4.35 9.96 -26.69 -0.27 -4.62 16 28 C -0.15 -3.35 9.48 -26.69 -0.25 -3.60 16 29 H 0.26 6.49 8.32 -40.82 -0.34 6.15 16 30 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 31 H 0.05 0.93 7.63 -51.93 -0.40 0.53 16 32 H 0.42 7.65 8.34 -34.47 -0.29 7.37 16 33 H 0.12 1.05 6.17 -51.93 -0.32 0.73 16 34 H 0.12 1.29 7.68 -51.93 -0.40 0.89 16 35 H 0.14 1.17 6.02 -52.49 -0.32 0.85 16 36 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.14 0.98 8.06 -52.49 -0.42 0.55 16 38 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 39 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 40 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 41 H 0.08 1.93 8.14 -51.93 -0.42 1.51 16 42 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 374.90 15.07 5.65 5.65 Total: -1.00 -30.53 374.90 -11.33 -41.85 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: -5.49 Total: 9.85 kcal Atomic # 6 Polarization: -28.93 SS G_CDS: -4.52 Total: -33.45 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 0.66 Total: -41.77 kcal Atomic # 8 Polarization: -35.05 SS G_CDS: -2.01 Total: -37.05 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.04 Total: -1.56 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 42.24 SS G_CDS: -0.63 Total: 41.61 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -30.53 -11.33 -41.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915177173.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.499 kcal (2) G-P(sol) polarization free energy of solvation -30.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds