Wall clock time and date at job start Tue Mar 31 2020 22:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86799 * 120.00509 * 2 1 4 4 H 1.48494 * 109.47047 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46929 * 300.00177 * 3 2 1 6 6 H 1.48499 * 109.46853 * 59.99865 * 3 2 1 7 7 C 1.37874 * 119.99395 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99761 * 172.57175 * 7 2 1 9 9 C 1.50710 * 120.00448 * 352.56550 * 7 2 1 10 10 C 1.52994 * 115.54440 * 84.73669 * 9 7 2 11 11 N 1.46500 * 109.47157 * 65.13099 * 10 9 7 12 12 S 1.65602 * 120.00006 * 164.38816 * 11 10 9 13 13 O 1.42107 * 104.27916 * 308.93083 * 12 11 10 14 14 O 1.42095 * 104.27675 * 181.07374 * 12 11 10 15 15 C 1.81396 * 104.45102 * 64.99826 * 12 11 10 16 16 H 1.09009 * 115.55881 * 39.30912 * 15 12 11 17 17 C 1.52999 * 117.50229 * 253.62285 * 15 12 11 18 18 C 1.52996 * 60.00020 * 252.50844 * 17 15 12 19 19 H 1.08998 * 117.50100 * 107.48959 * 18 17 15 20 20 C 1.50704 * 117.50018 * 252.48698 * 18 17 15 21 21 C 1.38266 * 119.98372 * 8.46975 * 20 18 17 22 22 C 1.38233 * 120.04966 * 179.76613 * 21 20 18 23 23 C 1.38217 * 120.02188 * 0.51552 * 22 21 20 24 24 C 1.38441 * 119.97654 * 359.73715 * 23 22 21 25 25 F 1.35100 * 120.02453 * 179.97438 * 24 23 22 26 26 C 1.38171 * 119.98712 * 188.74765 * 20 18 17 27 27 C 1.52999 * 117.49786 * 230.40951 * 9 7 2 28 28 C 1.53003 * 117.49747 * 299.07211 * 9 7 2 29 29 H 0.97006 * 119.99316 * 5.01660 * 1 2 3 30 30 H 1.08992 * 109.47576 * 305.12670 * 10 9 7 31 31 H 1.09005 * 109.46549 * 185.12602 * 10 9 7 32 32 H 0.96991 * 120.00283 * 344.39092 * 11 10 9 33 33 H 1.09000 * 117.50046 * 145.01925 * 17 15 12 34 34 H 1.08996 * 117.52060 * 359.97438 * 17 15 12 35 35 H 1.07995 * 119.97866 * 0.02676 * 21 20 18 36 36 H 1.07999 * 119.98885 * 180.25462 * 22 21 20 37 37 H 1.08001 * 120.00884 * 179.76314 * 23 22 21 38 38 H 1.07993 * 120.01776 * 0.02562 * 26 20 18 39 39 H 1.09002 * 117.49247 * 214.99686 * 27 9 7 40 40 H 1.08999 * 117.49901 * 0.02562 * 27 9 7 41 41 H 1.09004 * 117.49572 * 359.96967 * 28 9 7 42 42 H 1.08990 * 117.49663 * 144.97082 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8906 2.3964 -1.2125 6 1 1.8906 2.3963 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0777 -1.1980 -0.1215 9 6 1.2603 -2.4939 0.1678 10 6 0.6714 -3.0875 -1.1134 11 7 1.7576 -3.4635 -2.0217 12 16 1.4560 -4.4710 -3.3009 13 8 0.7817 -5.5800 -2.7222 14 8 2.7211 -4.6290 -3.9284 15 6 0.3308 -3.5268 -4.3653 16 1 0.5489 -2.4624 -4.4532 17 6 -1.1388 -3.9514 -4.3924 18 6 -0.2383 -4.2353 -5.5962 19 1 0.0634 -5.2688 -5.7664 20 6 -0.4547 -3.4086 -6.8375 21 6 -1.3123 -2.3245 -6.8049 22 6 -1.5081 -1.5623 -7.9413 23 6 -0.8548 -1.8897 -9.1146 24 6 0.0001 -2.9780 -9.1497 25 9 0.6388 -3.2992 -10.2961 26 6 0.1995 -3.7376 -8.0091 27 6 1.7746 -3.4702 1.2276 28 6 0.4758 -2.6958 1.4657 29 1 -0.4849 0.8369 -0.0735 30 1 0.0332 -2.3479 -1.5967 31 1 0.0818 -3.9707 -0.8669 32 1 2.6534 -3.1223 -1.8739 33 1 -1.8876 -3.1663 -4.4980 34 1 -1.4300 -4.7982 -3.7710 35 1 -1.8263 -2.0704 -5.8897 36 1 -2.1750 -0.7133 -7.9137 37 1 -1.0108 -1.2963 -10.0034 38 1 0.8656 -4.5873 -8.0357 39 1 1.6933 -4.5356 1.0120 40 1 2.6509 -3.1723 1.8034 41 1 0.4983 -1.8887 2.1981 42 1 -0.4601 -3.2513 1.4068 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915177173.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:22:07 Heat of formation + Delta-G solvation = -60.715464 kcal Electronic energy + Delta-G solvation = -26758.150514 eV Core-core repulsion = 22745.607723 eV Total energy + Delta-G solvation = -4012.542791 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.94360 -40.64904 -38.77941 -38.22928 -37.74493 -37.03078 -34.80321 -33.90147 -32.13096 -31.20559 -27.78872 -26.58965 -25.35121 -24.50439 -23.61122 -22.86675 -21.74455 -21.17826 -20.11780 -18.90469 -18.37854 -18.18815 -17.78000 -17.18145 -17.08134 -16.95571 -16.63597 -16.59631 -16.03612 -15.69869 -15.27854 -14.92291 -14.58300 -14.50754 -14.04900 -14.02582 -13.74454 -13.64664 -13.37857 -13.15235 -13.07836 -12.97268 -12.93763 -12.91300 -12.83976 -12.30376 -12.20298 -12.08657 -11.99253 -11.93020 -11.61392 -11.34847 -10.81112 -10.45207 -10.15442 -9.94402 -9.91368 -9.65666 -8.06493 -6.16569 -0.67422 0.04705 0.16788 1.41521 1.47805 1.55569 1.75104 2.14908 2.45470 2.65534 2.79555 3.10419 3.21079 3.31123 3.43935 3.54412 3.55653 3.71337 3.83201 4.00228 4.06751 4.13792 4.23382 4.39610 4.55441 4.61447 4.68047 4.70955 4.77408 4.81963 4.88075 4.91617 5.04954 5.05701 5.09681 5.31661 5.31787 5.39333 5.44697 5.66978 5.76652 5.83249 5.86581 6.26461 6.45738 6.88529 7.51380 9.01008 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012036 B = 0.003337 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.779130 B = 8388.788554 C = 9660.369669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.037 3.963 3 Si 0.938 3.062 4 H -0.273 1.273 5 H -0.281 1.281 6 H -0.286 1.286 7 C -0.507 4.507 8 H 0.052 0.948 9 C 0.014 3.986 10 C 0.171 3.829 11 N -1.101 6.101 12 S 2.650 3.350 13 O -0.981 6.981 14 O -0.995 6.995 15 C -0.669 4.669 16 H 0.169 0.831 17 C -0.103 4.103 18 C -0.068 4.068 19 H 0.137 0.863 20 C -0.037 4.037 21 C -0.129 4.129 22 C -0.085 4.085 23 C -0.154 4.154 24 C 0.080 3.920 25 F -0.148 7.148 26 C -0.157 4.157 27 C -0.195 4.195 28 C -0.156 4.156 29 H 0.261 0.739 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.417 0.583 33 H 0.138 0.862 34 H 0.130 0.870 35 H 0.149 0.851 36 H 0.163 0.837 37 H 0.155 0.845 38 H 0.143 0.857 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.062 0.938 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.480 -4.451 -15.121 17.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.164 4.164 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.207 1.207 6 H -0.212 1.212 7 C -0.544 4.544 8 H 0.070 0.930 9 C 0.012 3.988 10 C 0.044 3.956 11 N -0.861 5.861 12 S 2.744 3.256 13 O -0.971 6.971 14 O -0.986 6.986 15 C -0.780 4.780 16 H 0.186 0.814 17 C -0.140 4.140 18 C -0.088 4.088 19 H 0.155 0.845 20 C -0.038 4.038 21 C -0.146 4.146 22 C -0.103 4.103 23 C -0.173 4.173 24 C 0.061 3.939 25 F -0.127 7.127 26 C -0.176 4.176 27 C -0.232 4.232 28 C -0.194 4.194 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.252 0.748 33 H 0.156 0.844 34 H 0.148 0.852 35 H 0.166 0.834 36 H 0.180 0.820 37 H 0.173 0.827 38 H 0.161 0.839 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.080 0.920 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.428 -5.283 -15.228 17.353 hybrid contribution 0.933 1.793 -0.053 2.023 sum -5.495 -3.490 -15.281 16.609 Atomic orbital electron populations 1.70047 1.06586 1.27199 1.49647 1.25477 0.95460 1.01072 0.94408 0.85817 0.79279 0.80961 0.77383 1.19776 1.20721 1.21214 1.20639 0.93046 0.90003 1.50755 0.92952 1.19059 0.98972 0.93887 0.86871 1.20655 0.87202 0.96959 0.90755 1.55133 1.19052 1.69129 1.42760 1.03377 0.74102 0.74198 0.73887 1.93536 1.77673 1.50185 1.75744 1.93525 1.40850 1.86359 1.77847 1.32626 1.13890 1.15795 1.15670 0.81360 1.23283 0.88397 1.04590 0.97753 1.20969 1.02871 0.98652 0.86293 0.84545 1.18873 0.96679 0.95896 0.92305 1.21491 0.98355 0.94522 1.00275 1.21364 0.98380 0.99593 0.90967 1.21487 0.97711 0.96909 1.01197 1.17872 0.96415 0.97496 0.82138 1.91482 1.80462 1.92552 1.48188 1.21139 1.02475 1.02095 0.91853 1.23014 0.97539 0.96516 1.06126 1.22489 0.93831 1.01085 1.02029 0.92986 0.92086 0.92436 0.74794 0.84404 0.85206 0.83375 0.81957 0.82740 0.83936 0.89723 0.90526 0.91972 0.90203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -46.17 12.97 21.45 0.28 -45.90 16 2 C 0.04 1.87 5.38 84.65 0.46 2.32 16 3 Si 0.94 40.60 29.55 68.60 2.03 42.62 16 4 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.29 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.51 -25.19 8.47 25.60 0.22 -24.97 16 8 H 0.05 2.63 7.82 -2.91 -0.02 2.61 16 9 C 0.01 0.63 1.43 -52.93 -0.08 0.55 16 10 C 0.17 6.72 5.96 86.38 0.52 7.24 16 11 N -1.10 -39.34 5.84 -187.50 -1.09 -40.44 16 12 S 2.65 83.57 5.82 -56.49 -0.33 83.24 16 13 O -0.98 -34.39 16.80 -127.65 -2.14 -36.54 16 14 O -1.00 -36.84 18.08 -127.65 -2.31 -39.15 16 15 C -0.67 -16.23 6.13 30.59 0.19 -16.04 16 16 H 0.17 4.03 8.14 -2.38 -0.02 4.01 16 17 C -0.10 -1.96 9.49 30.59 0.29 -1.67 16 18 C -0.07 -1.37 5.80 -11.54 -0.07 -1.44 16 19 H 0.14 2.40 8.14 -2.39 -0.02 2.38 16 20 C -0.04 -0.73 5.61 -19.87 -0.11 -0.84 16 21 C -0.13 -2.19 9.30 22.28 0.21 -1.98 16 22 C -0.09 -1.25 10.04 22.26 0.22 -1.03 16 23 C -0.15 -2.52 10.03 22.31 0.22 -2.29 16 24 C 0.08 1.63 7.30 22.38 0.16 1.80 16 25 F -0.15 -3.29 17.27 44.97 0.78 -2.52 16 26 C -0.16 -3.23 9.72 22.31 0.22 -3.01 16 27 C -0.19 -7.95 9.96 30.62 0.30 -7.64 16 28 C -0.16 -6.77 9.48 30.62 0.29 -6.48 16 29 H 0.26 12.87 8.32 -92.70 -0.77 12.10 16 30 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 31 H 0.06 2.14 7.63 -2.38 -0.02 2.12 16 32 H 0.42 15.31 8.34 -96.76 -0.81 14.50 16 33 H 0.14 2.05 6.17 -2.39 -0.01 2.03 16 34 H 0.13 2.39 7.68 -2.39 -0.02 2.37 16 35 H 0.15 2.07 6.02 -2.91 -0.02 2.05 16 36 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 37 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 38 H 0.14 2.66 8.06 -2.91 -0.02 2.63 16 39 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 40 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 41 H 0.06 2.92 8.14 -2.38 -0.02 2.91 16 42 H 0.08 3.19 8.14 -2.39 -0.02 3.17 16 Total: -1.00 -63.83 374.90 0.49 -63.34 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: 0.24 Total: 30.85 kcal Atomic # 6 Polarization: -58.56 SS G_CDS: 3.04 Total: -55.52 kcal Atomic # 7 Polarization: -85.52 SS G_CDS: -0.82 Total: -86.33 kcal Atomic # 8 Polarization: -71.23 SS G_CDS: -4.45 Total: -75.68 kcal Atomic # 9 Polarization: -3.29 SS G_CDS: 0.78 Total: -2.52 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.62 kcal Atomic # 16 Polarization: 83.57 SS G_CDS: -0.33 Total: 83.24 kcal Total: -63.83 0.49 -63.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915177173.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.622 kcal (2) G-P(sol) polarization free energy of solvation -63.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds