Wall clock time and date at job start Tue Mar 31 2020 23:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50706 * 119.99796 * 2 1 4 4 N 1.46497 * 109.46911 * 125.00004 * 3 2 1 5 5 C 1.46500 * 120.00286 * 84.99892 * 4 3 2 6 6 C 1.50706 * 109.47299 * 84.99362 * 5 4 3 7 7 H 1.07998 * 119.99503 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00434 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99826 * 359.72891 * 8 6 5 10 10 Si 1.86800 * 120.00406 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46758 * 269.72576 * 10 8 6 12 12 H 1.48499 * 109.47026 * 29.72423 * 10 8 6 13 13 H 1.48496 * 109.47474 * 149.72459 * 10 8 6 14 14 S 1.65605 * 120.00189 * 264.99619 * 4 3 2 15 15 O 1.42101 * 104.27103 * 26.07417 * 14 4 3 16 16 O 1.42096 * 104.28019 * 153.92908 * 14 4 3 17 17 C 1.81404 * 104.44970 * 270.00339 * 14 4 3 18 18 H 1.09000 * 115.54659 * 39.27700 * 17 14 4 19 19 C 1.53000 * 117.49696 * 253.60686 * 17 14 4 20 20 C 1.52992 * 117.49600 * 184.98303 * 17 14 4 21 21 H 1.09002 * 117.50328 * 0.02562 * 20 17 14 22 22 C 1.50706 * 117.49730 * 214.97768 * 20 17 14 23 23 C 1.38271 * 119.98481 * 120.00488 * 22 20 17 24 24 C 1.38224 * 120.04737 * 179.97438 * 23 22 20 25 25 C 1.38217 * 120.02455 * 0.02562 * 24 23 22 26 26 C 1.38436 * 119.97848 * 359.97438 * 25 24 23 27 27 F 1.35101 * 120.02741 * 180.02562 * 26 25 24 28 28 C 1.38177 * 119.98622 * 299.72618 * 22 20 17 29 29 H 1.07994 * 120.00047 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.99603 * 0.02562 * 1 2 3 31 31 H 1.07995 * 120.00064 * 179.97438 * 2 1 3 32 32 H 1.08994 * 109.47340 * 5.00152 * 3 2 1 33 33 H 1.09004 * 109.47020 * 244.99707 * 3 2 1 34 34 H 1.09004 * 109.47078 * 325.00123 * 5 4 3 35 35 H 1.08993 * 109.47364 * 204.99895 * 5 4 3 36 36 H 0.97000 * 120.00236 * 0.27947 * 9 8 6 37 37 H 1.08992 * 117.49692 * 359.97438 * 19 17 14 38 38 H 1.09001 * 117.49457 * 144.99967 * 19 17 14 39 39 H 1.07995 * 119.97559 * 359.97438 * 23 22 20 40 40 H 1.07999 * 119.98638 * 179.97438 * 24 23 22 41 41 H 1.08001 * 120.00766 * 179.97438 * 25 24 23 42 42 H 1.07995 * 120.01096 * 0.02562 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.3217 0.7269 1.0025 6 6 5.2698 1.7227 0.3856 7 1 4.9184 2.7080 0.1170 8 6 6.5858 1.3761 0.1642 9 7 7.0150 0.1781 0.4963 10 14 7.7611 2.6107 -0.5997 11 1 7.7397 2.4656 -2.0774 12 1 7.3418 3.9868 -0.2313 13 1 9.1362 2.3613 -0.0977 14 16 2.5443 2.0463 2.5563 15 8 1.1265 1.9510 2.5639 16 8 3.3281 1.3872 3.5413 17 6 3.0652 3.7750 2.3800 18 1 2.9158 4.2126 1.3930 19 6 4.2911 4.2280 3.1756 20 6 2.8940 4.6915 3.5930 21 1 2.4687 4.2557 4.4971 22 6 2.5315 6.1308 3.3320 23 6 1.3580 6.6519 3.8451 24 6 1.0245 7.9720 3.6069 25 6 1.8637 8.7725 2.8549 26 6 3.0388 8.2518 2.3407 27 9 3.8601 9.0335 1.6060 28 6 3.3747 6.9308 2.5848 29 1 -0.5400 -0.9352 0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1317 0.0896 33 1 2.6214 1.4027 -0.9314 34 1 4.2584 -0.1563 0.3667 35 1 4.6873 0.4395 1.9882 36 1 6.4048 -0.4630 0.8932 37 1 4.7842 3.4874 3.8051 38 1 4.9481 4.9638 2.7119 39 1 0.7015 6.0270 4.4324 40 1 0.1075 8.3778 4.0078 41 1 1.6026 9.8038 2.6687 42 1 4.2932 6.5246 2.1876 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915815594.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:56 Heat of formation + Delta-G solvation = -43.701804 kcal Electronic energy + Delta-G solvation = -27349.329878 eV Core-core repulsion = 23337.524855 eV Total energy + Delta-G solvation = -4011.805023 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.04630 -39.75246 -37.02653 -36.61751 -36.43895 -35.44864 -33.49045 -31.92986 -30.97150 -30.69971 -27.07641 -24.85092 -24.46934 -23.48285 -22.66719 -22.32369 -20.82583 -19.61085 -18.38518 -17.98971 -17.14818 -16.91963 -16.64319 -16.37379 -16.12424 -15.74005 -15.51886 -14.92437 -14.47797 -14.21368 -14.06604 -13.80958 -13.64926 -13.38059 -13.12506 -12.79262 -12.60647 -12.30839 -12.11556 -11.81167 -11.77994 -11.62362 -11.57362 -11.47551 -11.14118 -11.07323 -11.02753 -10.79668 -10.60519 -10.56311 -10.37666 -10.20043 -9.42737 -9.13394 -9.06839 -8.81657 -8.47007 -7.97624 -6.47287 -4.22127 0.72060 0.91927 0.96599 2.53402 3.01623 3.34808 3.37109 3.38019 3.53665 3.66114 3.98855 4.17370 4.39102 4.43163 4.44339 4.58997 4.62179 4.80220 4.93769 5.01983 5.09697 5.14795 5.22850 5.28114 5.38768 5.52598 5.61209 5.68149 5.81972 5.85582 5.91981 5.99572 6.03785 6.08580 6.18797 6.27427 6.30161 6.65385 6.90459 7.00530 7.06845 7.19440 7.41312 7.92222 8.33452 8.70571 9.49590 10.90351 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009045 B = 0.004596 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3094.786448 B = 6090.549432 C = 8043.884972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.163 4.163 3 C 0.158 3.842 4 N -0.973 5.973 5 C 0.234 3.766 6 C -0.620 4.620 7 H 0.056 0.944 8 C 0.024 3.976 9 N -0.906 5.906 10 Si 1.067 2.933 11 H -0.287 1.287 12 H -0.288 1.288 13 H -0.283 1.283 14 S 2.637 3.363 15 O -0.966 6.966 16 O -0.953 6.953 17 C -0.657 4.657 18 H 0.156 0.844 19 C -0.099 4.099 20 C -0.085 4.085 21 H 0.125 0.875 22 C -0.018 4.018 23 C -0.122 4.122 24 C -0.089 4.089 25 C -0.159 4.159 26 C 0.101 3.899 27 F -0.139 7.139 28 C -0.150 4.150 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.029 0.971 35 H 0.044 0.956 36 H 0.271 0.729 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.476 12.697 4.336 17.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.182 4.182 3 C 0.032 3.968 4 N -0.810 5.810 5 C 0.112 3.888 6 C -0.659 4.659 7 H 0.074 0.926 8 C -0.181 4.181 9 N -0.541 5.541 10 Si 0.896 3.104 11 H -0.214 1.214 12 H -0.215 1.215 13 H -0.208 1.208 14 S 2.728 3.272 15 O -0.956 6.956 16 O -0.943 6.943 17 C -0.763 4.763 18 H 0.174 0.826 19 C -0.136 4.136 20 C -0.105 4.105 21 H 0.143 0.857 22 C -0.019 4.019 23 C -0.140 4.140 24 C -0.107 4.107 25 C -0.178 4.178 26 C 0.082 3.918 27 F -0.118 7.118 28 C -0.169 4.169 29 H 0.112 0.888 30 H 0.115 0.885 31 H 0.127 0.873 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.047 0.953 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.143 0.857 38 H 0.131 0.869 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.259 12.524 4.529 16.811 hybrid contribution -1.129 0.456 -0.392 1.279 sum -11.388 12.980 4.137 17.756 Atomic orbital electron populations 1.23751 0.95795 1.01514 1.01243 1.23396 0.96045 0.99610 0.99192 1.20182 0.90771 0.94575 0.91275 1.57203 1.24847 1.70316 1.28671 1.19299 0.76998 0.94199 0.98353 1.22364 0.96673 1.00997 1.45900 0.92557 1.25730 0.97190 0.99413 0.95808 1.70755 1.39157 1.05442 1.38747 0.83561 0.76063 0.74463 0.76350 1.21415 1.21460 1.20839 1.04015 0.73618 0.75605 0.73978 1.93542 1.29382 1.86044 1.86648 1.93557 1.71861 1.70416 1.58501 1.32950 1.15149 1.23879 1.04292 0.82598 1.22928 0.88808 1.02657 0.99250 1.20856 1.02674 0.91089 0.95834 0.85729 1.18883 0.93928 0.93093 0.95983 1.21113 0.96408 0.95687 1.00837 1.20983 0.99141 0.93392 0.97161 1.21157 0.94330 1.01378 1.00942 1.17652 0.90017 0.89153 0.94962 1.91512 1.71407 1.74114 1.74758 1.21150 1.01982 0.92390 1.01367 0.88848 0.88532 0.87293 0.91138 0.89235 0.95301 0.93805 0.91841 0.85723 0.86855 0.84901 0.84773 0.84783 0.84110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.68 14.32 29.01 0.42 -2.26 16 2 C -0.16 -2.68 9.84 -36.02 -0.35 -3.03 16 3 C 0.16 2.75 5.70 -5.19 -0.03 2.72 16 4 N -0.97 -19.57 2.68 -116.95 -0.31 -19.88 16 5 C 0.23 5.59 4.72 -5.19 -0.02 5.57 16 6 C -0.62 -15.81 9.38 -34.44 -0.32 -16.13 16 7 H 0.06 1.39 7.81 -52.49 -0.41 0.98 16 8 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 9 N -0.91 -26.08 13.65 55.43 0.76 -25.32 16 10 Si 1.07 23.86 29.90 -169.99 -5.08 18.78 16 11 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 12 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 13 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 14 S 2.64 49.66 5.73 -107.50 -0.62 49.04 16 15 O -0.97 -18.84 16.99 -57.54 -0.98 -19.81 16 16 O -0.95 -20.72 15.84 -57.54 -0.91 -21.64 16 17 C -0.66 -10.26 6.23 -26.74 -0.17 -10.43 16 18 H 0.16 2.32 8.14 -51.93 -0.42 1.89 16 19 C -0.10 -1.46 9.49 -26.73 -0.25 -1.71 16 20 C -0.08 -1.11 5.81 -91.77 -0.53 -1.65 16 21 H 0.12 1.42 8.14 -51.93 -0.42 1.00 16 22 C -0.02 -0.22 5.61 -104.63 -0.59 -0.81 16 23 C -0.12 -1.25 9.74 -39.57 -0.39 -1.63 16 24 C -0.09 -0.78 10.04 -39.59 -0.40 -1.18 16 25 C -0.16 -1.55 10.03 -39.52 -0.40 -1.95 16 26 C 0.10 1.21 7.30 -39.42 -0.29 0.92 16 27 F -0.14 -1.79 17.27 2.25 0.04 -1.75 16 28 C -0.15 -1.87 9.28 -39.51 -0.37 -2.24 16 29 H 0.09 1.17 8.06 -52.49 -0.42 0.75 16 30 H 0.10 1.32 7.84 -52.49 -0.41 0.91 16 31 H 0.11 1.81 8.06 -52.49 -0.42 1.38 16 32 H 0.07 1.09 7.26 -51.93 -0.38 0.71 16 33 H 0.09 1.55 8.11 -51.93 -0.42 1.13 16 34 H 0.03 0.71 7.98 -51.93 -0.41 0.30 16 35 H 0.04 1.14 6.68 -51.93 -0.35 0.79 16 36 H 0.27 7.78 7.22 -40.82 -0.29 7.48 16 37 H 0.12 1.90 7.68 -51.93 -0.40 1.50 16 38 H 0.11 1.53 6.17 -51.93 -0.32 1.21 16 39 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 40 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 41 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 42 H 0.14 1.74 6.01 -52.49 -0.32 1.42 16 LS Contribution 375.67 15.07 5.66 5.66 Total: -1.00 -31.85 375.67 -10.70 -42.55 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -5.47 Total: 5.63 kcal Atomic # 6 Polarization: -29.47 SS G_CDS: -3.79 Total: -33.25 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: 0.44 Total: -45.21 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -1.89 Total: -41.45 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.04 Total: -1.75 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -5.08 Total: 18.78 kcal Atomic # 16 Polarization: 49.66 SS G_CDS: -0.62 Total: 49.04 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.85 -10.70 -42.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915815594.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.157 kcal (2) G-P(sol) polarization free energy of solvation -31.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds