Wall clock time and date at job start Tue Mar 31 2020 23:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50706 * 119.99796 * 2 1 4 4 N 1.46497 * 109.46911 * 125.00004 * 3 2 1 5 5 C 1.46500 * 120.00286 * 84.99892 * 4 3 2 6 6 C 1.50706 * 109.47299 * 84.99362 * 5 4 3 7 7 H 1.07998 * 119.99503 * 0.02562 * 6 5 4 8 8 C 1.37871 * 120.00434 * 180.02562 * 6 5 4 9 9 N 1.31516 * 119.99826 * 359.72891 * 8 6 5 10 10 Si 1.86800 * 120.00406 * 180.02562 * 8 6 5 11 11 H 1.48501 * 109.46758 * 269.72576 * 10 8 6 12 12 H 1.48499 * 109.47026 * 29.72423 * 10 8 6 13 13 H 1.48496 * 109.47474 * 149.72459 * 10 8 6 14 14 S 1.65605 * 120.00189 * 264.99619 * 4 3 2 15 15 O 1.42101 * 104.27103 * 26.07417 * 14 4 3 16 16 O 1.42096 * 104.28019 * 153.92908 * 14 4 3 17 17 C 1.81404 * 104.44970 * 270.00339 * 14 4 3 18 18 H 1.09000 * 115.54659 * 39.27700 * 17 14 4 19 19 C 1.53000 * 117.49696 * 253.60686 * 17 14 4 20 20 C 1.52992 * 117.49600 * 184.98303 * 17 14 4 21 21 H 1.09002 * 117.50328 * 0.02562 * 20 17 14 22 22 C 1.50706 * 117.49730 * 214.97768 * 20 17 14 23 23 C 1.38271 * 119.98481 * 120.00488 * 22 20 17 24 24 C 1.38224 * 120.04737 * 179.97438 * 23 22 20 25 25 C 1.38217 * 120.02455 * 0.02562 * 24 23 22 26 26 C 1.38436 * 119.97848 * 359.97438 * 25 24 23 27 27 F 1.35101 * 120.02741 * 180.02562 * 26 25 24 28 28 C 1.38177 * 119.98622 * 299.72618 * 22 20 17 29 29 H 1.07994 * 120.00047 * 180.02562 * 1 2 3 30 30 H 1.07998 * 119.99603 * 0.02562 * 1 2 3 31 31 H 1.07995 * 120.00064 * 179.97438 * 2 1 3 32 32 H 1.08994 * 109.47340 * 5.00152 * 3 2 1 33 33 H 1.09004 * 109.47020 * 244.99707 * 3 2 1 34 34 H 1.09004 * 109.47078 * 325.00123 * 5 4 3 35 35 H 1.08993 * 109.47364 * 204.99895 * 5 4 3 36 36 H 0.97000 * 120.00236 * 0.27947 * 9 8 6 37 37 H 1.08992 * 117.49692 * 359.97438 * 19 17 14 38 38 H 1.09001 * 117.49457 * 144.99967 * 19 17 14 39 39 H 1.07995 * 119.97559 * 359.97438 * 23 22 20 40 40 H 1.07999 * 119.98638 * 179.97438 * 24 23 22 41 41 H 1.08001 * 120.00766 * 179.97438 * 25 24 23 42 42 H 1.07995 * 120.01096 * 0.02562 * 28 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 7 2.9937 1.3320 1.1314 5 6 4.3217 0.7269 1.0025 6 6 5.2698 1.7227 0.3856 7 1 4.9184 2.7080 0.1170 8 6 6.5858 1.3761 0.1642 9 7 7.0150 0.1781 0.4963 10 14 7.7611 2.6107 -0.5997 11 1 7.7397 2.4656 -2.0774 12 1 7.3418 3.9868 -0.2313 13 1 9.1362 2.3613 -0.0977 14 16 2.5443 2.0463 2.5563 15 8 1.1265 1.9510 2.5639 16 8 3.3281 1.3872 3.5413 17 6 3.0652 3.7750 2.3800 18 1 2.9158 4.2126 1.3930 19 6 4.2911 4.2280 3.1756 20 6 2.8940 4.6915 3.5930 21 1 2.4687 4.2557 4.4971 22 6 2.5315 6.1308 3.3320 23 6 1.3580 6.6519 3.8451 24 6 1.0245 7.9720 3.6069 25 6 1.8637 8.7725 2.8549 26 6 3.0388 8.2518 2.3407 27 9 3.8601 9.0335 1.6060 28 6 3.3747 6.9308 2.5848 29 1 -0.5400 -0.9352 0.0004 30 1 -0.5399 0.9353 -0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1317 0.0896 33 1 2.6214 1.4027 -0.9314 34 1 4.2584 -0.1563 0.3667 35 1 4.6873 0.4395 1.9882 36 1 6.4048 -0.4630 0.8932 37 1 4.7842 3.4874 3.8051 38 1 4.9481 4.9638 2.7119 39 1 0.7015 6.0270 4.4324 40 1 0.1075 8.3778 4.0078 41 1 1.6026 9.8038 2.6687 42 1 4.2932 6.5246 2.1876 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915815594.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:03:55 Heat of formation + Delta-G solvation = -61.667612 kcal Electronic energy + Delta-G solvation = -27350.108934 eV Core-core repulsion = 23337.524855 eV Total energy + Delta-G solvation = -4012.584079 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.94670 -40.65054 -38.37930 -38.06040 -37.81054 -37.03138 -35.27572 -33.54438 -31.81233 -31.51196 -28.86391 -26.44522 -25.46131 -24.80234 -24.20401 -23.40038 -21.77224 -20.91635 -19.91187 -19.22407 -18.74882 -18.35562 -17.98429 -17.26740 -17.11125 -17.03784 -16.63974 -16.14465 -15.85144 -15.61068 -15.54180 -14.93319 -14.89432 -14.70004 -14.33995 -14.10937 -13.84550 -13.66238 -13.41198 -13.36091 -13.26273 -13.11267 -12.82674 -12.65617 -12.51861 -12.45893 -12.34398 -12.24328 -12.13992 -11.92930 -11.85231 -11.63633 -11.19415 -10.54915 -10.33542 -9.98424 -9.76217 -9.60765 -8.60456 -6.36305 -0.71924 0.04964 0.16506 1.24575 1.54990 1.62017 1.76110 1.79020 2.13442 2.57522 2.65755 2.80839 3.14135 3.18079 3.21487 3.37874 3.52634 3.64987 3.74782 3.87411 3.97569 4.09490 4.13472 4.18542 4.27107 4.37337 4.50736 4.67567 4.68449 4.76480 4.78932 4.91616 4.97365 5.05431 5.05625 5.12006 5.28935 5.31346 5.44444 5.64487 5.68497 5.87321 5.88356 5.90951 6.26961 6.55000 7.44083 8.76121 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009045 B = 0.004596 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3094.786448 B = 6090.549432 C = 8043.884972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.195 4.195 3 C 0.152 3.848 4 N -0.982 5.982 5 C 0.248 3.752 6 C -0.614 4.614 7 H 0.066 0.934 8 C -0.027 4.027 9 N -0.937 5.937 10 Si 1.110 2.890 11 H -0.276 1.276 12 H -0.265 1.265 13 H -0.288 1.288 14 S 2.641 3.359 15 O -0.973 6.973 16 O -0.991 6.991 17 C -0.658 4.658 18 H 0.166 0.834 19 C -0.112 4.112 20 C -0.059 4.059 21 H 0.143 0.857 22 C -0.037 4.037 23 C -0.121 4.121 24 C -0.081 4.081 25 C -0.152 4.152 26 C 0.079 3.921 27 F -0.150 7.150 28 C -0.163 4.163 29 H 0.115 0.885 30 H 0.109 0.891 31 H 0.097 0.903 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.012 0.988 35 H 0.017 0.983 36 H 0.257 0.743 37 H 0.113 0.887 38 H 0.124 0.876 39 H 0.154 0.846 40 H 0.171 0.829 41 H 0.158 0.842 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.660 15.625 4.433 21.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.215 4.215 3 C 0.027 3.973 4 N -0.818 5.818 5 C 0.124 3.876 6 C -0.653 4.653 7 H 0.084 0.916 8 C -0.226 4.226 9 N -0.574 5.574 10 Si 0.932 3.068 11 H -0.201 1.201 12 H -0.190 1.190 13 H -0.214 1.214 14 S 2.736 3.264 15 O -0.964 6.964 16 O -0.982 6.982 17 C -0.768 4.768 18 H 0.184 0.816 19 C -0.150 4.150 20 C -0.079 4.079 21 H 0.160 0.840 22 C -0.038 4.038 23 C -0.139 4.139 24 C -0.098 4.098 25 C -0.170 4.170 26 C 0.060 3.940 27 F -0.129 7.129 28 C -0.182 4.182 29 H 0.133 0.867 30 H 0.127 0.873 31 H 0.115 0.885 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.030 0.970 35 H 0.035 0.965 36 H 0.067 0.933 37 H 0.131 0.869 38 H 0.142 0.858 39 H 0.172 0.828 40 H 0.189 0.811 41 H 0.175 0.825 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.497 15.411 4.618 20.371 hybrid contribution -0.601 -0.375 -0.368 0.798 sum -13.098 15.035 4.250 20.388 Atomic orbital electron populations 1.24035 0.94995 1.03160 0.97734 1.23327 0.96937 0.98791 1.02441 1.20378 0.90704 0.96048 0.90146 1.57135 1.23677 1.71168 1.29831 1.18850 0.78854 0.93682 0.96251 1.22645 0.96767 1.01398 1.44459 0.91617 1.27109 0.99500 1.00069 0.95885 1.70875 1.39095 1.06482 1.40958 0.83026 0.73965 0.73587 0.76221 1.20140 1.18956 1.21357 1.03694 0.73100 0.76644 0.72958 1.93515 1.29547 1.86842 1.86493 1.93510 1.72485 1.72404 1.59770 1.32581 1.16731 1.21249 1.06233 0.81584 1.23035 0.89733 1.02882 0.99360 1.21044 1.00616 0.91515 0.94720 0.83976 1.18853 0.95200 0.92218 0.97497 1.21454 0.95660 0.96663 1.00121 1.21402 0.99930 0.92569 0.95915 1.21516 0.93172 1.02632 0.99706 1.17903 0.91024 0.89116 0.95972 1.91481 1.71930 1.74290 1.75196 1.21169 1.02083 0.93008 1.01940 0.86704 0.87277 0.88469 0.88870 0.89772 0.96996 0.96516 0.93327 0.86853 0.85754 0.82820 0.81135 0.82461 0.84947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.38 14.32 67.78 0.97 -3.41 16 2 C -0.20 -6.41 9.84 25.64 0.25 -6.16 16 3 C 0.15 5.29 5.70 85.64 0.49 5.78 16 4 N -0.98 -40.30 2.68 -523.90 -1.41 -41.71 16 5 C 0.25 12.37 4.72 85.64 0.40 12.77 16 6 C -0.61 -31.80 9.38 25.60 0.24 -31.56 16 7 H 0.07 3.22 7.81 -2.91 -0.02 3.20 16 8 C -0.03 -1.45 5.46 84.65 0.46 -0.98 16 9 N -0.94 -55.74 13.65 21.45 0.29 -55.44 16 10 Si 1.11 47.81 29.90 68.60 2.05 49.87 16 11 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 12 H -0.27 -10.31 7.11 99.48 0.71 -9.61 16 13 H -0.29 -12.57 7.11 99.48 0.71 -11.87 16 14 S 2.64 99.94 5.73 -56.49 -0.32 99.62 16 15 O -0.97 -37.13 16.99 -127.65 -2.17 -39.30 16 16 O -0.99 -44.59 15.84 -127.65 -2.02 -46.61 16 17 C -0.66 -19.99 6.23 30.59 0.19 -19.80 16 18 H 0.17 4.72 8.14 -2.39 -0.02 4.70 16 19 C -0.11 -3.26 9.49 30.60 0.29 -2.97 16 20 C -0.06 -1.46 5.81 -11.54 -0.07 -1.52 16 21 H 0.14 2.95 8.14 -2.39 -0.02 2.93 16 22 C -0.04 -0.81 5.61 -19.87 -0.11 -0.92 16 23 C -0.12 -2.01 9.74 22.27 0.22 -1.80 16 24 C -0.08 -1.06 10.04 22.26 0.22 -0.84 16 25 C -0.15 -2.43 10.03 22.31 0.22 -2.20 16 26 C 0.08 1.73 7.30 22.37 0.16 1.90 16 27 F -0.15 -3.68 17.27 44.97 0.78 -2.90 16 28 C -0.16 -3.82 9.28 22.31 0.21 -3.61 16 29 H 0.11 2.60 8.06 -2.91 -0.02 2.58 16 30 H 0.11 2.69 7.84 -2.91 -0.02 2.67 16 31 H 0.10 3.36 8.06 -2.91 -0.02 3.34 16 32 H 0.09 2.75 7.26 -2.39 -0.02 2.74 16 33 H 0.08 2.95 8.11 -2.39 -0.02 2.93 16 34 H 0.01 0.63 7.98 -2.39 -0.02 0.61 16 35 H 0.02 0.93 6.68 -2.39 -0.02 0.91 16 36 H 0.26 15.56 7.22 -92.71 -0.67 14.89 16 37 H 0.11 3.55 7.68 -2.39 -0.02 3.53 16 38 H 0.12 3.30 6.17 -2.39 -0.01 3.28 16 39 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 40 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 41 H 0.16 1.74 8.06 -2.91 -0.02 1.72 16 42 H 0.13 3.20 6.01 -2.91 -0.02 3.18 16 Total: -1.00 -70.27 375.67 2.48 -67.79 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: 1.13 Total: 24.02 kcal Atomic # 6 Polarization: -59.49 SS G_CDS: 4.15 Total: -55.33 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -1.11 Total: -97.15 kcal Atomic # 8 Polarization: -81.72 SS G_CDS: -4.19 Total: -85.91 kcal Atomic # 9 Polarization: -3.68 SS G_CDS: 0.78 Total: -2.90 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.05 Total: 49.87 kcal Atomic # 16 Polarization: 99.94 SS G_CDS: -0.32 Total: 99.62 kcal Total: -70.27 2.48 -67.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915815594.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.124 kcal (2) G-P(sol) polarization free energy of solvation -70.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds