Wall clock time and date at job start Tue Mar 31 2020 22:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86803 * 120.00263 * 2 1 4 4 H 1.48495 * 109.47107 * 239.99947 * 3 2 1 5 5 H 1.48498 * 109.46987 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47136 * 119.99797 * 3 2 1 7 7 C 1.38810 * 120.00007 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00333 * 180.02562 * 7 2 1 9 9 N 1.36939 * 119.99894 * 359.97438 * 7 2 1 10 10 C 1.47581 * 134.49266 * 179.97438 * 9 7 2 11 11 C 1.53944 * 86.11810 * 155.36454 * 10 9 7 12 12 N 1.46899 * 113.74495 * 137.95047 * 11 10 9 13 13 C 1.46896 * 111.00319 * 301.22891 * 12 11 10 14 14 C 1.53239 * 109.34006 * 172.74236 * 13 12 11 15 15 N 1.47081 * 108.51772 * 53.83381 * 14 13 12 16 16 C 1.34774 * 120.88136 * 128.83894 * 15 14 13 17 17 O 1.21716 * 119.99847 * 352.98091 * 16 15 14 18 18 C 1.46520 * 119.99866 * 172.98303 * 16 15 14 19 19 C 1.36620 * 125.97789 * 172.51059 * 18 16 15 20 20 C 1.40248 * 106.73769 * 179.97438 * 19 18 16 21 21 C 1.35365 * 107.11671 * 359.97438 * 20 19 18 22 22 Cl 1.73606 * 125.63111 * 179.97438 * 21 20 19 23 23 O 1.33952 * 108.73609 * 359.75695 * 21 20 19 24 24 C 1.47082 * 118.23696 * 308.80947 * 15 14 13 25 25 C 1.46900 * 110.99757 * 176.92157 * 12 11 10 26 26 C 1.47812 * 134.45638 * 359.87157 * 9 7 2 27 27 H 0.97002 * 119.99836 * 359.97438 * 1 2 3 28 28 H 1.08999 * 113.76962 * 41.06054 * 10 9 7 29 29 H 1.09005 * 113.87114 * 269.67432 * 10 9 7 30 30 H 1.09000 * 113.74128 * 269.15890 * 11 10 9 31 31 H 1.08996 * 109.48958 * 292.70391 * 13 12 11 32 32 H 1.08998 * 109.49382 * 52.78171 * 13 12 11 33 33 H 1.08992 * 109.62989 * 294.11774 * 14 13 12 34 34 H 1.09004 * 109.62445 * 173.53941 * 14 13 12 35 35 H 1.07998 * 126.62957 * 359.97438 * 19 18 16 36 36 H 1.07997 * 126.43846 * 180.02562 * 20 19 18 37 37 H 1.08998 * 109.62567 * 291.47901 * 24 15 14 38 38 H 1.08998 * 109.62575 * 170.90328 * 24 15 14 39 39 H 1.08991 * 109.49584 * 307.21263 * 25 12 11 40 40 H 1.08997 * 109.49090 * 67.30009 * 25 12 11 41 41 H 1.09007 * 113.77034 * 90.37695 * 26 9 7 42 42 H 1.08991 * 113.83645 * 318.91540 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0016 10 6 1.7200 -3.8101 0.0019 11 6 0.3474 -4.0827 0.6433 12 7 -0.3353 -5.2645 0.1000 13 6 -0.5460 -5.1315 -1.3477 14 6 -1.0921 -6.4507 -1.9043 15 7 -2.2880 -6.8235 -1.1334 16 6 -3.4417 -7.1378 -1.7552 17 8 -3.5430 -6.9929 -2.9595 18 6 -4.5739 -7.6537 -0.9815 19 6 -5.8361 -7.8741 -1.4557 20 6 -6.5909 -8.3669 -0.3813 21 6 -5.7664 -8.4263 0.6907 22 17 -6.2098 -8.9698 2.2787 23 8 -4.5508 -8.0009 0.3226 24 6 -2.1912 -6.8449 0.3341 25 6 -1.6017 -5.5102 0.8026 26 6 -0.1058 -2.7570 0.0048 27 1 -0.4850 0.8401 0.0004 28 1 2.5628 -4.0321 0.6566 29 1 1.8317 -4.2372 -0.9948 30 1 0.3606 -4.0631 1.7331 31 1 -1.2616 -4.3320 -1.5391 32 1 0.4012 -4.8964 -1.8331 33 1 -0.3362 -7.2299 -1.8073 34 1 -1.3580 -6.3231 -2.9537 35 1 -6.1852 -7.7020 -2.4631 36 1 -7.6336 -8.6472 -0.4050 37 1 -1.5409 -7.6621 0.6462 38 1 -3.1837 -6.9782 0.7645 39 1 -1.4202 -5.5499 1.8765 40 1 -2.3026 -4.7054 0.5811 41 1 -0.5320 -2.8726 -0.9919 42 1 -0.7184 -2.1396 0.6616 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941314700.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:09 Heat of formation + Delta-G solvation = 74.662678 kcal Electronic energy + Delta-G solvation = -27270.789187 eV Core-core repulsion = 23281.993088 eV Total energy + Delta-G solvation = -3988.796099 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -43.22870 -40.21753 -38.86865 -37.48692 -36.76973 -34.05301 -33.50071 -31.88646 -31.47897 -29.98115 -28.07963 -26.34891 -24.86637 -24.29224 -23.31865 -22.43844 -22.37088 -21.17692 -20.12249 -18.62727 -17.96586 -17.31526 -17.06221 -16.77556 -16.21480 -15.54834 -15.15831 -14.97661 -14.80791 -14.35244 -14.31526 -13.96780 -13.80587 -13.59147 -13.51317 -13.17223 -12.62444 -12.41486 -12.29023 -11.99233 -11.85933 -11.77465 -11.58141 -11.25228 -10.96218 -10.87608 -10.68543 -10.67991 -10.52961 -10.39566 -10.17237 -9.91972 -9.51390 -9.10328 -8.82967 -8.74743 -7.86835 -6.87279 -5.77994 -3.10748 0.53601 0.64136 1.78716 2.50169 2.83634 3.01931 3.38583 3.42516 3.43950 4.08903 4.19801 4.33157 4.48152 4.83292 4.91947 5.01349 5.09527 5.14446 5.23107 5.30426 5.31454 5.36990 5.48606 5.59084 5.63741 5.74291 5.76642 5.84064 5.91081 6.01483 6.15108 6.18330 6.31473 6.35693 6.53687 6.61529 6.95920 7.12908 7.18652 7.33887 7.50088 7.58948 7.77384 7.96261 9.02556 9.69354 10.57830 11.38649 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018606 B = 0.002446 C = 0.002366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.545915 B =11444.644944 C =11831.963980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C -0.008 4.008 3 Si 0.912 3.088 4 H -0.285 1.285 5 H -0.290 1.290 6 H -0.284 1.284 7 C -0.222 4.222 8 H 0.080 0.920 9 N -0.609 5.609 10 C 0.127 3.873 11 C 0.034 3.966 12 N -0.529 5.529 13 C 0.036 3.964 14 C 0.118 3.882 15 N -0.598 5.598 16 C 0.601 3.399 17 O -0.519 6.519 18 C -0.052 4.052 19 C -0.114 4.114 20 C -0.183 4.183 21 C 0.041 3.959 22 Cl 0.033 6.967 23 O -0.148 6.148 24 C 0.104 3.896 25 C 0.042 3.958 26 C 0.132 3.868 27 H 0.254 0.746 28 H 0.045 0.955 29 H 0.037 0.963 30 H 0.100 0.900 31 H 0.050 0.950 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.096 0.904 35 H 0.170 0.830 36 H 0.167 0.833 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.041 0.959 41 H 0.031 0.969 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.828 -20.780 2.200 24.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.204 4.204 3 Si 0.743 3.257 4 H -0.212 1.212 5 H -0.216 1.216 6 H -0.210 1.210 7 C -0.350 4.350 8 H 0.098 0.902 9 N -0.336 5.336 10 C 0.000 4.000 11 C -0.074 4.074 12 N -0.254 5.254 13 C -0.092 4.092 14 C -0.004 4.004 15 N -0.330 5.330 16 C 0.388 3.612 17 O -0.397 6.397 18 C -0.104 4.104 19 C -0.134 4.134 20 C -0.203 4.203 21 C -0.037 4.037 22 Cl 0.062 6.938 23 O -0.046 6.046 24 C -0.018 4.018 25 C -0.086 4.086 26 C 0.005 3.995 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.055 0.945 30 H 0.118 0.882 31 H 0.068 0.932 32 H 0.113 0.887 33 H 0.097 0.903 34 H 0.115 0.885 35 H 0.188 0.812 36 H 0.185 0.815 37 H 0.099 0.901 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.060 0.940 41 H 0.049 0.951 42 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -12.286 -20.769 1.974 24.211 hybrid contribution -0.255 1.607 0.088 1.630 sum -12.541 -19.162 2.062 22.994 Atomic orbital electron populations 1.69812 1.05053 1.25429 1.56612 1.24789 0.95665 0.97562 1.02432 0.86196 0.78477 0.83111 0.77956 1.21159 1.21577 1.21050 1.18963 0.90228 0.81887 1.43941 0.90228 1.45810 1.02212 0.99427 1.86116 1.22648 0.94494 0.85769 0.97063 1.24307 0.96164 0.87639 0.99298 1.62039 1.20611 1.39835 1.02872 1.22602 1.01805 0.95520 0.89287 1.21925 0.85035 0.97133 0.96305 1.48109 1.10699 1.66146 1.08089 1.16584 0.80511 0.78058 0.86028 1.90898 1.81241 1.54861 1.12681 1.22226 0.97826 1.09459 0.80919 1.21944 0.91124 0.99323 1.01042 1.21542 1.01622 1.06675 0.90456 1.23041 0.85444 1.04930 0.90300 1.98459 1.89118 1.86913 1.19326 1.84247 1.30670 1.63646 1.26049 1.22296 1.02297 0.98828 0.78413 1.22388 0.91330 0.95584 0.99348 1.22949 0.88629 0.90446 0.97434 0.93636 0.93642 0.94546 0.88234 0.93211 0.88653 0.90291 0.88535 0.81206 0.81516 0.90107 0.88366 0.89368 0.94041 0.95141 0.91318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.50 11.39 55.49 0.63 -26.86 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 3 Si 0.91 22.23 29.55 -169.99 -5.02 17.20 16 4 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.22 -6.25 10.70 -15.06 -0.16 -6.41 16 8 H 0.08 2.15 7.83 -52.48 -0.41 1.74 16 9 N -0.61 -15.53 3.70 -177.85 -0.66 -16.19 16 10 C 0.13 2.55 8.42 -2.97 -0.02 2.53 16 11 C 0.03 0.63 4.03 -69.91 -0.28 0.35 16 12 N -0.53 -7.92 4.76 -228.23 -1.09 -9.00 16 13 C 0.04 0.54 4.47 -3.70 -0.02 0.53 16 14 C 0.12 1.50 6.62 -3.60 -0.02 1.48 16 15 N -0.60 -7.64 3.01 -174.06 -0.52 -8.17 16 16 C 0.60 8.14 7.65 -12.92 -0.10 8.04 16 17 O -0.52 -8.31 16.33 5.17 0.08 -8.23 16 18 C -0.05 -0.60 6.76 -36.83 -0.25 -0.85 16 19 C -0.11 -1.09 10.62 -39.41 -0.42 -1.51 16 20 C -0.18 -1.45 10.84 -39.85 -0.43 -1.88 16 21 C 0.04 0.36 7.93 29.71 0.24 0.60 16 22 Cl 0.03 0.24 29.30 -51.86 -1.52 -1.28 16 23 O -0.15 -1.54 7.30 4.76 0.03 -1.51 16 24 C 0.10 1.17 6.22 -3.60 -0.02 1.14 16 25 C 0.04 0.55 5.61 -3.70 -0.02 0.53 16 26 C 0.13 3.06 6.81 -2.83 -0.02 3.05 16 27 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.04 0.71 6.23 -51.93 -0.32 0.39 16 30 H 0.10 1.80 8.04 -51.93 -0.42 1.38 16 31 H 0.05 0.86 6.45 -51.93 -0.33 0.52 16 32 H 0.10 1.48 6.06 -51.93 -0.31 1.16 16 33 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.10 1.27 7.04 -51.93 -0.37 0.90 16 35 H 0.17 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 37 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 38 H 0.10 1.04 4.40 -52.41 -0.23 0.81 16 39 H 0.09 1.03 8.04 -51.93 -0.42 0.61 16 40 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.03 0.73 5.65 -51.92 -0.29 0.44 16 42 H 0.07 1.80 7.16 -51.93 -0.37 1.42 16 LS Contribution 352.74 15.07 5.32 5.32 Total: -1.00 -32.07 352.74 -9.53 -41.60 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -5.15 Total: -0.15 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: -1.63 Total: 7.27 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: -1.64 Total: -60.22 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.12 Total: -9.73 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 17 Polarization: 0.24 SS G_CDS: -1.52 Total: -1.28 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -32.07 -9.53 -41.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941314700.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.260 kcal (2) G-P(sol) polarization free energy of solvation -32.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds