Wall clock time and date at job start Tue Mar 31 2020 22:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38522 * 120.86193 * 2 1 4 4 Cl 1.73597 * 120.35836 * 0.04069 * 3 2 1 5 5 C 1.38415 * 119.27955 * 180.02562 * 3 2 1 6 6 N 1.31951 * 121.06300 * 359.97438 * 5 3 2 7 7 C 1.31663 * 121.89132 * 359.72291 * 6 5 3 8 8 C 1.39559 * 120.59504 * 0.54214 * 7 6 5 9 9 C 1.47849 * 120.55431 * 179.74680 * 8 7 6 10 10 O 1.21550 * 120.00150 * 173.89608 * 9 8 7 11 11 N 1.34779 * 119.99934 * 353.89216 * 9 8 7 12 12 C 1.46501 * 119.99823 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.46775 * 180.02562 * 12 11 9 14 14 H 1.08997 * 110.91722 * 302.55537 * 13 12 11 15 15 C 1.54916 * 111.00333 * 66.45409 * 13 12 11 16 16 N 1.47429 * 104.82937 * 155.07952 * 15 13 12 17 17 C 1.36936 * 125.64193 * 155.83760 * 16 15 13 18 18 H 1.07994 * 120.00284 * 0.02562 * 17 16 15 19 19 C 1.38819 * 119.99579 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00072 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99910 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47107 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46889 * 120.00024 * 21 19 17 24 24 H 1.48497 * 109.47187 * 239.99864 * 21 19 17 25 25 C 1.47016 * 108.70605 * 335.87510 * 16 15 13 26 26 C 1.54328 * 107.26968 * 1.05627 * 25 16 15 27 27 H 1.08996 * 110.71819 * 263.82672 * 26 25 16 28 28 O 1.42905 * 110.71826 * 140.55868 * 26 25 16 29 29 H 1.09003 * 109.47057 * 263.72092 * 1 2 3 30 30 H 1.09003 * 109.47277 * 23.71923 * 1 2 3 31 31 H 1.08998 * 109.47144 * 143.72279 * 1 2 3 32 32 H 1.08001 * 119.47233 * 179.97438 * 5 3 2 33 33 H 1.07998 * 119.70383 * 180.28987 * 7 6 5 34 34 H 0.97004 * 119.99700 * 0.02562 * 11 9 8 35 35 H 1.08997 * 109.46732 * 60.00850 * 12 11 9 36 36 H 1.08999 * 109.46890 * 300.00204 * 12 11 9 37 37 H 1.08991 * 110.36758 * 273.92132 * 15 13 12 38 38 H 1.09005 * 110.36276 * 36.24605 * 15 13 12 39 39 H 0.96993 * 119.99915 * 179.97438 * 20 19 17 40 40 H 1.08994 * 109.88402 * 120.47497 * 25 16 15 41 41 H 1.09002 * 109.88407 * 241.49056 * 25 16 15 42 42 H 0.96696 * 114.00269 * 66.47866 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2176 1.1891 0.0000 4 17 1.3818 2.7106 0.0011 5 6 3.6012 1.1509 -0.0005 6 7 4.2506 0.0022 -0.0005 7 6 3.6198 -1.1535 0.0054 8 6 2.2250 -1.2014 0.0005 9 6 1.5176 -2.4997 0.0016 10 8 0.3073 -2.5323 0.1093 11 7 2.2147 -3.6471 -0.1170 12 6 1.5138 -4.9335 -0.1155 13 6 2.5299 -6.0680 -0.2618 14 1 3.1178 -5.9489 -1.1718 15 6 3.4466 -6.1564 0.9839 16 7 3.9087 -7.5561 1.0138 17 6 5.0552 -8.0053 1.6128 18 1 5.7080 -7.3099 2.1193 19 6 5.3784 -9.3547 1.5688 20 7 4.5826 -10.2022 0.9519 21 14 6.9428 -9.9674 2.3853 22 1 7.6576 -8.8237 3.0066 23 1 6.5977 -10.9625 3.4322 24 1 7.8164 -10.6033 1.3667 25 6 2.9351 -8.3895 0.2933 26 6 1.8275 -7.4511 -0.2304 27 1 0.9787 -7.4372 0.4533 28 8 1.4152 -7.8387 -1.5426 29 1 -0.3633 -0.1124 1.0215 30 1 -0.3634 0.9409 -0.4134 31 1 -0.3633 -0.8284 -0.6080 32 1 4.1583 2.0761 -0.0010 33 1 4.1868 -2.0726 0.0099 34 1 3.1806 -3.6210 -0.2027 35 1 0.8109 -4.9652 -0.9480 36 1 0.9715 -5.0506 0.8227 37 1 4.2943 -5.4792 0.8799 38 1 2.8826 -5.9237 1.8872 39 1 4.8086 -11.1450 0.9209 40 1 3.4228 -8.8902 -0.5430 41 1 2.5078 -9.1294 0.9701 42 1 0.9705 -8.6966 -1.5779 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958150803.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:11 Heat of formation + Delta-G solvation = -28.043118 kcal Electronic energy + Delta-G solvation = -26618.376921 eV Core-core repulsion = 22625.127165 eV Total energy + Delta-G solvation = -3993.249756 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.15958 -39.39437 -38.24806 -37.11224 -35.39248 -34.87660 -33.99151 -32.56855 -31.62931 -29.75991 -28.34286 -27.55983 -25.78412 -24.79060 -23.52618 -22.54223 -21.13786 -20.30576 -19.97462 -18.16671 -17.47799 -16.97878 -16.81245 -16.60405 -15.80918 -15.66425 -15.64976 -15.04664 -14.71380 -14.24385 -14.04147 -13.69251 -13.38713 -13.28280 -13.16391 -13.04291 -12.71802 -12.49883 -12.40448 -12.37289 -12.07286 -11.62818 -11.53613 -11.28481 -11.03057 -10.87255 -10.64478 -10.41729 -10.07698 -9.99248 -9.95262 -9.88029 -9.68339 -9.43784 -9.27440 -9.09602 -8.71082 -6.95856 -5.80825 -3.15553 0.13243 0.56673 1.53909 2.54046 2.93741 3.33587 3.34737 3.40438 3.42834 3.84470 4.12511 4.19298 4.33793 4.40309 4.61588 4.66870 4.81250 4.98592 5.09711 5.14525 5.28094 5.36334 5.43419 5.44460 5.60367 5.67100 5.78194 5.82870 5.90703 5.96474 6.07753 6.13234 6.26060 6.31822 6.45027 6.73979 7.27949 7.32679 7.33651 7.44432 7.70054 7.98865 8.13152 8.14449 9.10669 9.71230 10.34791 11.30824 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017973 B = 0.002376 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.503378 B =11781.862846 C =13041.611863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.029 3.971 3 C -0.106 4.106 4 Cl -0.046 7.046 5 C 0.139 3.861 6 N -0.474 5.474 7 C 0.144 3.856 8 C -0.179 4.179 9 C 0.563 3.437 10 O -0.528 6.528 11 N -0.715 5.715 12 C 0.134 3.866 13 C -0.109 4.109 14 H 0.091 0.909 15 C 0.141 3.859 16 N -0.602 5.602 17 C -0.231 4.231 18 H 0.081 0.919 19 C -0.008 4.008 20 N -0.922 5.922 21 Si 0.914 3.086 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.151 3.849 26 C 0.083 3.917 27 H 0.057 0.943 28 O -0.566 6.566 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.170 0.830 33 H 0.169 0.831 34 H 0.401 0.599 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.042 0.958 38 H 0.024 0.976 39 H 0.253 0.747 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.208 21.010 -3.542 22.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.020 3.980 3 C -0.135 4.135 4 Cl -0.017 7.017 5 C -0.018 4.018 6 N -0.183 5.183 7 C -0.014 4.014 8 C -0.185 4.185 9 C 0.348 3.652 10 O -0.407 6.407 11 N -0.366 5.366 12 C 0.011 3.989 13 C -0.129 4.129 14 H 0.109 0.891 15 C 0.014 3.986 16 N -0.329 5.329 17 C -0.359 4.359 18 H 0.098 0.902 19 C -0.204 4.204 20 N -0.569 5.569 21 Si 0.744 3.256 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.026 3.974 26 C 0.023 3.977 27 H 0.075 0.925 28 O -0.371 6.371 29 H 0.107 0.893 30 H 0.089 0.911 31 H 0.123 0.877 32 H 0.187 0.813 33 H 0.186 0.814 34 H 0.237 0.763 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.061 0.939 38 H 0.042 0.958 39 H 0.063 0.937 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -6.858 21.461 -3.586 22.814 hybrid contribution 0.221 -0.854 0.593 1.063 sum -6.637 20.607 -2.994 21.856 Atomic orbital electron populations 1.21194 0.88066 1.04391 1.04741 1.20375 0.98286 0.89747 0.89611 1.21937 0.94002 0.88080 1.09492 1.98379 1.78105 1.28365 1.96878 1.23018 0.89365 0.97424 0.92041 1.67888 1.39449 0.97773 1.13181 1.23196 0.90520 0.96914 0.90764 1.20907 0.94909 0.94219 1.08443 1.17824 0.86942 0.83219 0.77171 1.90745 1.13333 1.86994 1.49588 1.45962 1.11107 1.05976 1.73555 1.21440 0.94700 0.80252 1.02507 1.22631 0.96667 0.92578 1.01046 0.89114 1.21619 0.94852 0.88744 0.93355 1.44309 1.23675 1.00905 1.64036 1.19108 0.96983 0.92087 1.27698 0.90161 1.24827 0.98977 0.95969 1.00620 1.69945 1.37361 1.02472 1.47149 0.86018 0.82390 0.78619 0.78565 1.20420 1.21703 1.21670 1.21836 0.87890 0.91176 0.96519 1.23111 0.96638 0.94390 0.83524 0.92492 1.86418 1.80240 1.41244 1.29242 0.89316 0.91103 0.87671 0.81300 0.81408 0.76301 0.90823 0.91019 0.93947 0.95849 0.93687 0.92385 0.93572 0.77648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.25 8.57 36.01 0.31 -0.94 16 2 C 0.03 0.30 5.96 -103.87 -0.62 -0.32 16 3 C -0.11 -0.96 6.33 -39.41 -0.25 -1.21 16 4 Cl -0.05 -0.36 27.35 -51.86 -1.42 -1.78 16 5 C 0.14 1.21 10.97 -17.44 -0.19 1.02 16 6 N -0.47 -4.85 10.34 -12.89 -0.13 -4.98 16 7 C 0.14 1.41 10.70 -17.13 -0.18 1.23 16 8 C -0.18 -1.93 5.89 -104.83 -0.62 -2.55 16 9 C 0.56 7.01 7.73 -12.33 -0.10 6.92 16 10 O -0.53 -7.85 13.50 5.32 0.07 -7.78 16 11 N -0.71 -8.40 5.36 -61.25 -0.33 -8.73 16 12 C 0.13 1.83 5.12 -4.04 -0.02 1.81 16 13 C -0.11 -1.76 2.83 -88.47 -0.25 -2.01 16 14 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 15 C 0.14 2.63 6.41 -2.52 -0.02 2.61 16 16 N -0.60 -14.58 3.39 -170.07 -0.58 -15.16 16 17 C -0.23 -6.18 10.28 -15.06 -0.15 -6.34 16 18 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 19 C -0.01 -0.21 5.49 -17.43 -0.10 -0.30 16 20 N -0.92 -26.29 10.31 55.49 0.57 -25.72 16 21 Si 0.91 21.55 29.55 -169.99 -5.02 16.53 16 22 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 C 0.15 3.47 5.15 -3.06 -0.02 3.46 16 26 C 0.08 1.48 3.80 -24.90 -0.09 1.38 16 27 H 0.06 0.94 8.04 -51.93 -0.42 0.52 16 28 O -0.57 -9.38 13.39 -35.23 -0.47 -9.85 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.59 6.78 -51.93 -0.35 0.23 16 31 H 0.10 1.19 5.95 -51.93 -0.31 0.88 16 32 H 0.17 1.02 8.06 -52.49 -0.42 0.60 16 33 H 0.17 1.29 6.47 -52.49 -0.34 0.95 16 34 H 0.40 3.98 6.44 -40.82 -0.26 3.71 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 37 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 38 H 0.02 0.44 8.00 -51.93 -0.42 0.03 16 39 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.06 1.51 7.29 -51.93 -0.38 1.13 16 41 H 0.05 1.17 7.50 -51.93 -0.39 0.78 16 42 H 0.38 4.81 9.12 45.56 0.42 5.23 16 LS Contribution 360.20 15.07 5.43 5.43 Total: -1.00 -32.12 360.20 -8.70 -40.82 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -4.53 Total: 6.47 kcal Atomic # 6 Polarization: 7.03 SS G_CDS: -2.29 Total: 4.74 kcal Atomic # 7 Polarization: -54.11 SS G_CDS: -0.47 Total: -54.58 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.40 Total: -17.63 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.42 Total: -1.78 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -32.12 -8.70 -40.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958150803.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.781 kcal (2) G-P(sol) polarization free energy of solvation -32.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds