Wall clock time and date at job start Tue Mar 31 2020 22:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38522 * 120.86193 * 2 1 4 4 Cl 1.73597 * 120.35836 * 0.04069 * 3 2 1 5 5 C 1.38415 * 119.27955 * 180.02562 * 3 2 1 6 6 N 1.31951 * 121.06300 * 359.97438 * 5 3 2 7 7 C 1.31663 * 121.89132 * 359.72291 * 6 5 3 8 8 C 1.39559 * 120.59504 * 0.54214 * 7 6 5 9 9 C 1.47849 * 120.55431 * 179.74680 * 8 7 6 10 10 O 1.21550 * 120.00150 * 173.89608 * 9 8 7 11 11 N 1.34779 * 119.99934 * 353.89216 * 9 8 7 12 12 C 1.46501 * 119.99823 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.46775 * 180.02562 * 12 11 9 14 14 H 1.08997 * 110.91722 * 302.55537 * 13 12 11 15 15 C 1.54916 * 111.00333 * 66.45409 * 13 12 11 16 16 N 1.47429 * 104.82937 * 155.07952 * 15 13 12 17 17 C 1.36936 * 125.64193 * 155.83760 * 16 15 13 18 18 H 1.07994 * 120.00284 * 0.02562 * 17 16 15 19 19 C 1.38819 * 119.99579 * 180.02562 * 17 16 15 20 20 N 1.31619 * 120.00072 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99910 * 179.97438 * 19 17 16 22 22 H 1.48495 * 109.47107 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.46889 * 120.00024 * 21 19 17 24 24 H 1.48497 * 109.47187 * 239.99864 * 21 19 17 25 25 C 1.47016 * 108.70605 * 335.87510 * 16 15 13 26 26 C 1.54328 * 107.26968 * 1.05627 * 25 16 15 27 27 H 1.08996 * 110.71819 * 263.82672 * 26 25 16 28 28 O 1.42905 * 110.71826 * 140.55868 * 26 25 16 29 29 H 1.09003 * 109.47057 * 263.72092 * 1 2 3 30 30 H 1.09003 * 109.47277 * 23.71923 * 1 2 3 31 31 H 1.08998 * 109.47144 * 143.72279 * 1 2 3 32 32 H 1.08001 * 119.47233 * 179.97438 * 5 3 2 33 33 H 1.07998 * 119.70383 * 180.28987 * 7 6 5 34 34 H 0.97004 * 119.99700 * 0.02562 * 11 9 8 35 35 H 1.08997 * 109.46732 * 60.00850 * 12 11 9 36 36 H 1.08999 * 109.46890 * 300.00204 * 12 11 9 37 37 H 1.08991 * 110.36758 * 273.92132 * 15 13 12 38 38 H 1.09005 * 110.36276 * 36.24605 * 15 13 12 39 39 H 0.96993 * 119.99915 * 179.97438 * 20 19 17 40 40 H 1.08994 * 109.88402 * 120.47497 * 25 16 15 41 41 H 1.09002 * 109.88407 * 241.49056 * 25 16 15 42 42 H 0.96696 * 114.00269 * 66.47866 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2176 1.1891 0.0000 4 17 1.3818 2.7106 0.0011 5 6 3.6012 1.1509 -0.0005 6 7 4.2506 0.0022 -0.0005 7 6 3.6198 -1.1535 0.0054 8 6 2.2250 -1.2014 0.0005 9 6 1.5176 -2.4997 0.0016 10 8 0.3073 -2.5323 0.1093 11 7 2.2147 -3.6471 -0.1170 12 6 1.5138 -4.9335 -0.1155 13 6 2.5299 -6.0680 -0.2618 14 1 3.1178 -5.9489 -1.1718 15 6 3.4466 -6.1564 0.9839 16 7 3.9087 -7.5561 1.0138 17 6 5.0552 -8.0053 1.6128 18 1 5.7080 -7.3099 2.1193 19 6 5.3784 -9.3547 1.5688 20 7 4.5826 -10.2022 0.9519 21 14 6.9428 -9.9674 2.3853 22 1 7.6576 -8.8237 3.0066 23 1 6.5977 -10.9625 3.4322 24 1 7.8164 -10.6033 1.3667 25 6 2.9351 -8.3895 0.2933 26 6 1.8275 -7.4511 -0.2304 27 1 0.9787 -7.4372 0.4533 28 8 1.4152 -7.8387 -1.5426 29 1 -0.3633 -0.1124 1.0215 30 1 -0.3634 0.9409 -0.4134 31 1 -0.3633 -0.8284 -0.6080 32 1 4.1583 2.0761 -0.0010 33 1 4.1868 -2.0726 0.0099 34 1 3.1806 -3.6210 -0.2027 35 1 0.8109 -4.9652 -0.9480 36 1 0.9715 -5.0506 0.8227 37 1 4.2943 -5.4792 0.8799 38 1 2.8826 -5.9237 1.8872 39 1 4.8086 -11.1450 0.9209 40 1 3.4228 -8.8902 -0.5430 41 1 2.5078 -9.1294 0.9701 42 1 0.9705 -8.6966 -1.5779 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000958150803.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:10 Heat of formation + Delta-G solvation = -51.664325 kcal Electronic energy + Delta-G solvation = -26619.401214 eV Core-core repulsion = 22625.127165 eV Total energy + Delta-G solvation = -3994.274049 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.96934 -40.43590 -39.62688 -37.77130 -36.65961 -36.29082 -34.81049 -34.12710 -32.69220 -31.20763 -29.45484 -28.92143 -27.27391 -25.90872 -24.81445 -23.36797 -22.40355 -21.75165 -21.31513 -19.22811 -18.71895 -18.38964 -17.98688 -17.42325 -17.06568 -16.70603 -16.59715 -16.40157 -15.89740 -15.66139 -15.43445 -14.78931 -14.63307 -14.39467 -14.10206 -13.99208 -13.92458 -13.83104 -13.65086 -13.23313 -13.13846 -13.09455 -13.03226 -12.75451 -12.43345 -12.26095 -12.24300 -11.89981 -11.77602 -11.47664 -11.21173 -10.83193 -10.78348 -10.73406 -10.55096 -10.17118 -10.06797 -8.92580 -7.86097 -5.22124 -0.61606 -0.17489 0.86278 1.47550 1.47624 1.57983 1.66589 1.97392 2.48405 2.55028 3.14805 3.24515 3.35424 3.42373 3.46172 3.53012 3.60292 3.74868 3.87096 3.90739 4.14335 4.16929 4.41608 4.43859 4.47075 4.54575 4.62665 4.67046 4.76460 4.89112 4.95224 4.97325 5.09053 5.23551 5.33414 5.39217 5.44132 5.50051 5.72785 6.17417 6.38362 6.58065 6.89725 7.04991 7.07996 7.75039 8.37850 9.24217 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.017973 B = 0.002376 C = 0.002146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.503378 B =11781.862846 C =13041.611863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.019 3.981 3 C -0.108 4.108 4 Cl -0.034 7.034 5 C 0.144 3.856 6 N -0.490 5.490 7 C 0.147 3.853 8 C -0.191 4.191 9 C 0.565 3.435 10 O -0.555 6.555 11 N -0.709 5.709 12 C 0.149 3.851 13 C -0.091 4.091 14 H 0.088 0.912 15 C 0.138 3.862 16 N -0.625 5.625 17 C -0.238 4.238 18 H 0.088 0.912 19 C -0.068 4.068 20 N -0.952 5.952 21 Si 0.977 3.023 22 H -0.263 1.263 23 H -0.295 1.295 24 H -0.294 1.294 25 C 0.160 3.840 26 C 0.097 3.903 27 H 0.076 0.924 28 O -0.570 6.570 29 H 0.086 0.914 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.196 0.804 33 H 0.186 0.814 34 H 0.411 0.589 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.060 0.940 38 H 0.032 0.968 39 H 0.246 0.754 40 H 0.018 0.982 41 H 0.012 0.988 42 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.807 23.335 -3.425 24.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.011 3.989 3 C -0.137 4.137 4 Cl -0.005 7.005 5 C -0.013 4.013 6 N -0.199 5.199 7 C -0.011 4.011 8 C -0.196 4.196 9 C 0.352 3.648 10 O -0.435 6.435 11 N -0.360 5.360 12 C 0.025 3.975 13 C -0.111 4.111 14 H 0.106 0.894 15 C 0.013 3.987 16 N -0.352 5.352 17 C -0.367 4.367 18 H 0.106 0.894 19 C -0.261 4.261 20 N -0.601 5.601 21 Si 0.806 3.194 22 H -0.187 1.187 23 H -0.222 1.222 24 H -0.221 1.221 25 C 0.034 3.966 26 C 0.037 3.963 27 H 0.094 0.906 28 O -0.377 6.377 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.107 0.893 32 H 0.213 0.787 33 H 0.203 0.797 34 H 0.249 0.751 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.049 0.951 39 H 0.055 0.945 40 H 0.037 0.963 41 H 0.030 0.970 42 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -6.452 23.825 -3.473 24.926 hybrid contribution 0.075 -1.494 0.546 1.592 sum -6.378 22.331 -2.927 23.407 Atomic orbital electron populations 1.21115 0.88027 1.04371 1.04339 1.20516 0.98524 0.90214 0.89696 1.21959 0.94245 0.88198 1.09285 1.98386 1.77926 1.27420 1.96803 1.23464 0.89423 0.97999 0.90403 1.67961 1.39792 0.98244 1.13884 1.23450 0.90164 0.97629 0.89849 1.20774 0.95322 0.93441 1.10080 1.18024 0.86627 0.83729 0.76398 1.90740 1.14530 1.87402 1.50869 1.45822 1.11592 1.05232 1.73393 1.21158 0.93763 0.80061 1.02520 1.22431 0.96416 0.92627 0.99596 0.89408 1.21816 0.95975 0.86197 0.94732 1.44616 1.23351 1.03453 1.63811 1.19526 0.97811 0.92383 1.27001 0.89378 1.25656 1.02063 0.96455 1.01925 1.70163 1.38981 1.02209 1.48783 0.85023 0.78990 0.78148 0.77265 1.18701 1.22173 1.22137 1.21602 0.88888 0.91757 0.94368 1.22886 0.95468 0.93769 0.84214 0.90582 1.86389 1.80298 1.42559 1.28417 0.89554 0.89824 0.89264 0.78719 0.79710 0.75113 0.90752 0.91082 0.92216 0.95059 0.94460 0.96341 0.96979 0.75763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.28 8.57 71.24 0.61 -1.67 16 2 C 0.02 0.37 5.96 -19.38 -0.12 0.26 16 3 C -0.11 -1.74 6.33 22.38 0.14 -1.60 16 4 Cl -0.03 -0.47 27.35 -2.72 -0.07 -0.54 16 5 C 0.14 2.16 10.97 84.72 0.93 3.09 16 6 N -0.49 -8.90 10.34 -194.68 -2.01 -10.91 16 7 C 0.15 2.57 10.70 85.04 0.91 3.48 16 8 C -0.19 -3.82 5.89 -20.00 -0.12 -3.93 16 9 C 0.57 13.27 7.73 86.79 0.67 13.94 16 10 O -0.56 -16.00 13.50 -3.87 -0.05 -16.05 16 11 N -0.71 -15.22 5.36 -465.96 -2.50 -17.72 16 12 C 0.15 3.74 5.12 86.38 0.44 4.19 16 13 C -0.09 -2.78 2.83 -9.40 -0.03 -2.80 16 14 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 15 C 0.14 4.93 6.41 86.86 0.56 5.49 16 16 N -0.63 -30.32 3.39 -691.98 -2.35 -32.67 16 17 C -0.24 -12.79 10.28 84.04 0.86 -11.92 16 18 H 0.09 4.46 7.83 -2.91 -0.02 4.44 16 19 C -0.07 -3.78 5.49 84.86 0.47 -3.32 16 20 N -0.95 -56.08 10.31 21.65 0.22 -55.86 16 21 Si 0.98 44.71 29.55 68.60 2.03 46.74 16 22 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 23 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 24 H -0.29 -13.55 7.11 99.48 0.71 -12.85 16 25 C 0.16 7.51 5.15 86.73 0.45 7.96 16 26 C 0.10 3.35 3.80 31.78 0.12 3.47 16 27 H 0.08 2.38 8.04 -2.39 -0.02 2.36 16 28 O -0.57 -18.23 13.39 -148.98 -1.99 -20.22 16 29 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.08 1.28 6.78 -2.39 -0.02 1.26 16 31 H 0.09 1.98 5.95 -2.39 -0.01 1.97 16 32 H 0.20 1.76 8.06 -2.91 -0.02 1.73 16 33 H 0.19 2.38 6.47 -2.91 -0.02 2.37 16 34 H 0.41 7.15 6.44 -92.71 -0.60 6.56 16 35 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.07 1.85 8.10 -2.39 -0.02 1.83 16 37 H 0.06 1.93 8.14 -2.39 -0.02 1.92 16 38 H 0.03 1.11 8.00 -2.38 -0.02 1.09 16 39 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 40 H 0.02 1.00 7.29 -2.39 -0.02 0.98 16 41 H 0.01 0.64 7.50 -2.39 -0.02 0.62 16 42 H 0.39 9.70 9.12 -74.06 -0.68 9.03 16 Total: -1.00 -69.98 360.20 -1.02 -71.00 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -0.19 Total: 19.60 kcal Atomic # 6 Polarization: 10.73 SS G_CDS: 5.90 Total: 16.63 kcal Atomic # 7 Polarization: -110.52 SS G_CDS: -6.64 Total: -117.16 kcal Atomic # 8 Polarization: -34.23 SS G_CDS: -2.05 Total: -36.27 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -0.07 Total: -0.54 kcal Total: -69.98 -1.02 -71.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958150803.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.336 kcal (2) G-P(sol) polarization free energy of solvation -69.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds