Wall clock time and date at job start Tue Mar 31 2020 22:46:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38517 * 120.86317 * 2 1 4 4 Cl 1.73591 * 120.36001 * 0.02562 * 3 2 1 5 5 C 1.38432 * 119.27329 * 180.25329 * 3 2 1 6 6 N 1.31947 * 121.06565 * 359.78408 * 5 3 2 7 7 C 1.31660 * 121.89391 * 359.97438 * 6 5 3 8 8 C 1.39559 * 120.59627 * 359.97438 * 7 6 5 9 9 C 1.47845 * 120.55351 * 179.97438 * 8 7 6 10 10 O 1.21549 * 119.99674 * 173.95342 * 9 8 7 11 11 N 1.34766 * 120.00127 * 353.95458 * 9 8 7 12 12 C 1.46497 * 120.00520 * 180.02562 * 11 9 8 13 13 C 1.52998 * 109.47680 * 180.02562 * 12 11 9 14 14 H 1.08997 * 110.88628 * 57.42399 * 13 12 11 15 15 C 1.54910 * 111.00115 * 293.54346 * 13 12 11 16 16 N 1.47425 * 104.92810 * 204.86007 * 15 13 12 17 17 C 1.36931 * 125.64876 * 204.15769 * 16 15 13 18 18 H 1.08000 * 120.00156 * 359.97438 * 17 16 15 19 19 C 1.38818 * 120.00342 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99481 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00255 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46967 * 90.00079 * 21 19 17 23 23 H 1.48502 * 109.47218 * 210.00103 * 21 19 17 24 24 H 1.48498 * 109.47243 * 329.99850 * 21 19 17 25 25 C 1.47287 * 108.55699 * 24.15715 * 16 15 13 26 26 C 1.54317 * 107.30750 * 358.92343 * 25 16 15 27 27 H 1.09004 * 110.87611 * 219.38269 * 26 25 16 28 28 O 1.42902 * 110.72123 * 96.18128 * 26 25 16 29 29 H 1.09005 * 109.47476 * 263.88867 * 1 2 3 30 30 H 1.09003 * 109.46852 * 23.88665 * 1 2 3 31 31 H 1.08991 * 109.47353 * 143.88563 * 1 2 3 32 32 H 1.08001 * 119.46322 * 179.76177 * 5 3 2 33 33 H 1.07999 * 119.70341 * 180.02562 * 7 6 5 34 34 H 0.97007 * 119.99709 * 359.97438 * 11 9 8 35 35 H 1.09005 * 109.47266 * 59.99462 * 12 11 9 36 36 H 1.09001 * 109.46922 * 300.00268 * 12 11 9 37 37 H 1.08992 * 110.37090 * 323.75726 * 15 13 12 38 38 H 1.09005 * 110.36365 * 85.96886 * 15 13 12 39 39 H 0.96995 * 119.99617 * 179.97438 * 20 19 17 40 40 H 1.09007 * 109.85710 * 239.49764 * 25 16 15 41 41 H 1.08998 * 110.00415 * 118.43340 * 25 16 15 42 42 H 0.96702 * 113.99772 * 66.47915 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2175 1.1890 0.0000 4 17 1.3819 2.7106 0.0007 5 6 3.6013 1.1506 -0.0053 6 7 4.2506 0.0019 -0.0061 7 6 3.6197 -1.1537 -0.0015 8 6 2.2250 -1.2016 0.0051 9 6 1.5175 -2.4998 0.0098 10 8 0.3081 -2.5324 0.1264 11 7 2.2136 -3.6470 -0.1151 12 6 1.5127 -4.9333 -0.1111 13 6 2.5276 -6.0678 -0.2658 14 1 3.2749 -6.0314 0.5268 15 6 3.1967 -6.0274 -1.6623 16 7 3.6343 -7.4126 -1.9139 17 6 4.6460 -7.7893 -2.7562 18 1 5.1988 -7.0411 -3.3050 19 6 4.9613 -9.1330 -2.9050 20 7 4.2881 -10.0449 -2.2358 21 14 6.3410 -9.6470 -4.0546 22 1 7.6220 -9.6851 -3.3044 23 1 6.0498 -10.9948 -4.6058 24 1 6.4480 -8.6697 -5.1675 25 6 2.8012 -8.3211 -1.1078 26 6 1.8186 -7.4475 -0.2999 27 1 1.6894 -7.8397 0.7089 28 8 0.5593 -7.3524 -0.9685 29 1 -0.3634 -0.1094 1.0218 30 1 -0.3633 0.9397 -0.4161 31 1 -0.3633 -0.8301 -0.6056 32 1 4.1584 2.0759 -0.0093 33 1 4.1867 -2.0729 -0.0019 34 1 3.1788 -3.6208 -0.2085 35 1 0.8042 -4.9637 -0.9389 36 1 0.9765 -5.0519 0.8305 37 1 2.4776 -5.7134 -2.4187 38 1 4.0542 -5.3545 -1.6527 39 1 4.5081 -10.9838 -2.3400 40 1 3.4307 -8.8961 -0.4286 41 1 2.2470 -8.9960 -1.7601 42 1 0.0756 -8.1883 -1.0169 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000958150805.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:16 Heat of formation + Delta-G solvation = -26.414979 kcal Electronic energy + Delta-G solvation = -26728.837491 eV Core-core repulsion = 22735.658336 eV Total energy + Delta-G solvation = -3993.179155 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.13134 -39.36184 -38.27929 -37.09624 -35.23896 -34.71320 -33.96381 -32.47836 -31.59182 -29.71501 -28.34779 -27.67936 -25.73033 -24.77371 -23.54142 -22.52613 -21.09657 -20.24121 -19.81760 -18.11597 -17.48003 -17.30440 -16.74981 -16.38892 -15.75476 -15.56951 -15.49574 -14.87386 -14.68072 -14.06637 -13.99549 -13.77004 -13.39092 -13.35684 -13.15137 -13.09775 -12.77078 -12.62511 -12.36027 -12.34092 -11.92138 -11.60879 -11.47610 -11.26179 -10.86222 -10.66894 -10.53003 -10.40991 -10.13209 -10.06097 -9.94804 -9.84336 -9.63140 -9.41941 -9.24213 -9.01806 -8.70680 -6.91546 -5.79088 -3.12132 0.15419 0.58507 1.55611 2.57663 2.99634 3.35961 3.36568 3.41481 3.43159 3.85985 4.14427 4.21345 4.37685 4.42951 4.63204 4.65554 4.86479 5.05009 5.13678 5.25289 5.29945 5.35229 5.45776 5.48467 5.53224 5.69622 5.83078 5.85264 5.94743 6.03091 6.11354 6.29828 6.32490 6.37746 6.52040 6.82647 7.29918 7.32607 7.37673 7.43220 7.69471 8.04242 8.15310 8.18074 9.13353 9.74202 10.39618 11.33209 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018107 B = 0.002404 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.979464 B =11645.215352 C =12841.045165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.029 3.971 3 C -0.106 4.106 4 Cl -0.046 7.046 5 C 0.138 3.862 6 N -0.475 5.475 7 C 0.144 3.856 8 C -0.178 4.178 9 C 0.561 3.439 10 O -0.528 6.528 11 N -0.717 5.717 12 C 0.140 3.860 13 C -0.111 4.111 14 H 0.090 0.910 15 C 0.144 3.856 16 N -0.602 5.602 17 C -0.227 4.227 18 H 0.079 0.921 19 C -0.009 4.009 20 N -0.925 5.925 21 Si 0.913 3.087 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.153 3.847 26 C 0.083 3.917 27 H 0.058 0.942 28 O -0.564 6.564 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.170 0.830 33 H 0.168 0.832 34 H 0.400 0.600 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.026 0.974 38 H 0.036 0.964 39 H 0.253 0.747 40 H 0.053 0.947 41 H 0.050 0.950 42 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.672 20.017 7.807 22.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.020 3.980 3 C -0.135 4.135 4 Cl -0.017 7.017 5 C -0.019 4.019 6 N -0.183 5.183 7 C -0.015 4.015 8 C -0.184 4.184 9 C 0.347 3.653 10 O -0.406 6.406 11 N -0.368 5.368 12 C 0.017 3.983 13 C -0.131 4.131 14 H 0.108 0.892 15 C 0.018 3.982 16 N -0.329 5.329 17 C -0.355 4.355 18 H 0.097 0.903 19 C -0.205 4.205 20 N -0.573 5.573 21 Si 0.744 3.256 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.207 1.207 25 C 0.028 3.972 26 C 0.023 3.977 27 H 0.076 0.924 28 O -0.370 6.370 29 H 0.106 0.894 30 H 0.089 0.911 31 H 0.124 0.876 32 H 0.187 0.813 33 H 0.185 0.815 34 H 0.235 0.765 35 H 0.102 0.898 36 H 0.085 0.915 37 H 0.043 0.957 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -5.418 20.516 7.742 22.587 hybrid contribution 0.274 -0.875 -0.575 1.082 sum -5.144 19.641 7.166 21.531 Atomic orbital electron populations 1.21187 0.88061 1.04446 1.04673 1.20380 0.98297 0.89749 0.89619 1.21939 0.93998 0.88075 1.09470 1.98378 1.78116 1.28374 1.96877 1.23011 0.89363 0.97406 0.92140 1.67877 1.39465 0.97780 1.13207 1.23179 0.90533 0.96876 0.90892 1.20938 0.94904 0.94299 1.08257 1.17810 0.86948 0.83205 0.77323 1.90749 1.13345 1.86963 1.49500 1.46036 1.11123 1.06250 1.73384 1.21254 0.94674 0.79512 1.02813 1.22700 0.96855 0.93147 1.00372 0.89220 1.21571 0.95754 0.88734 0.92150 1.44415 1.38148 0.99552 1.50768 1.19065 1.07516 0.91680 1.17260 0.90341 1.24799 0.99765 0.95697 1.00245 1.69924 1.42388 1.00153 1.44792 0.86094 0.81487 0.77811 0.80230 1.21562 1.21660 1.20663 1.21895 0.91185 0.90858 0.93305 1.23110 0.84417 0.95356 0.94778 0.92444 1.86395 1.32622 1.37157 1.80835 0.89363 0.91103 0.87642 0.81322 0.81461 0.76499 0.89826 0.91479 0.95670 0.94592 0.93710 0.92907 0.93187 0.77706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.29 8.56 36.00 0.31 -0.98 16 2 C 0.03 0.30 5.96 -103.87 -0.62 -0.32 16 3 C -0.11 -0.98 6.33 -39.41 -0.25 -1.23 16 4 Cl -0.05 -0.37 27.36 -51.86 -1.42 -1.79 16 5 C 0.14 1.22 10.97 -17.43 -0.19 1.03 16 6 N -0.47 -4.89 10.34 -12.88 -0.13 -5.02 16 7 C 0.14 1.42 10.70 -17.13 -0.18 1.23 16 8 C -0.18 -1.97 5.89 -104.82 -0.62 -2.59 16 9 C 0.56 7.21 7.72 -12.33 -0.10 7.12 16 10 O -0.53 -8.12 13.51 5.32 0.07 -8.05 16 11 N -0.72 -8.66 5.36 -61.25 -0.33 -8.99 16 12 C 0.14 1.99 4.74 -4.04 -0.02 1.97 16 13 C -0.11 -1.76 3.03 -88.47 -0.27 -2.03 16 14 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 15 C 0.14 2.80 6.39 -2.53 -0.02 2.78 16 16 N -0.60 -14.74 3.40 -169.86 -0.58 -15.32 16 17 C -0.23 -6.15 10.28 -15.06 -0.15 -6.30 16 18 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 19 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 20 N -0.92 -26.35 10.34 55.49 0.57 -25.78 16 21 Si 0.91 21.68 29.55 -169.99 -5.02 16.66 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.15 3.47 5.15 -2.92 -0.02 3.46 16 26 C 0.08 1.44 4.09 -24.90 -0.10 1.34 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 28 O -0.56 -9.36 12.09 -35.23 -0.43 -9.78 16 29 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 30 H 0.07 0.61 6.79 -51.93 -0.35 0.26 16 31 H 0.11 1.25 5.97 -51.93 -0.31 0.94 16 32 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 33 H 0.17 1.28 6.47 -52.49 -0.34 0.94 16 34 H 0.40 4.03 6.44 -40.82 -0.26 3.76 16 35 H 0.08 1.38 7.42 -51.93 -0.39 0.99 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.03 0.53 8.00 -51.93 -0.42 0.11 16 38 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 40 H 0.05 1.32 7.39 -51.92 -0.38 0.94 16 41 H 0.05 1.27 7.45 -51.93 -0.39 0.88 16 42 H 0.38 4.90 9.12 45.56 0.42 5.32 16 LS Contribution 358.52 15.07 5.40 5.40 Total: -1.00 -32.32 358.52 -8.68 -41.01 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -4.50 Total: 6.52 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -2.32 Total: 5.15 kcal Atomic # 7 Polarization: -54.64 SS G_CDS: -0.47 Total: -55.11 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.35 Total: -17.83 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -1.42 Total: -1.79 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.32 -8.68 -41.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000958150805.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.590 kcal (2) G-P(sol) polarization free energy of solvation -32.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds